Hippoglossus stenolepis (Pacific halibut): 118106130
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Entry
118106130 CDS
T08308
Name
(RefSeq) protocadherin Fat 4
KO
K16669
protocadherin Fat 4
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
hsp04515
]
118106130
Cell adhesion molecules [BR:
hsp04515
]
Cadherins
Cadherin related
118106130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
EGF
hEGF
EGF_CA
EGF_TEN
EGF_2
EGF_3
cEGF
Motif
Other DBs
NCBI-GeneID:
118106130
NCBI-ProteinID:
XP_047195599
LinkDB
All DBs
Position
4:6419405..6427768
Genome browser
AA seq
2165 aa
AA seq
DB search
MESTGRQRKVLILLFPFSVFNIASSHGPSTGNSVNTSSEKQFADFVLRQFPFSSVDVVPQ
QDAVSSHSHDRWRTQAASSRGVYSFEVKEDTVPGRVVGKLETGFGSPTPITYSVQEDDGE
NLFLLSPLSGEFLLSRSLDFEAQSIYILTVVVQQGDSQVSSVRVYFNVLNVNDNPPVFSQ
DAFSASLLEDAQVGACFLSLNVSDKDDGDNGELTLKVLDGAEETVFFMNSAGSLCLNKEL
DRERQSSYNVTVTASDSVQPESLQLTSTAHVIVVVQDVNDNAPLFVSGTSVRIPEDAALH
SVVTTAHAEDGDAGSNGEVLYYLNSTSSGMFSINTTSGEISLEETLDREQVDTLTITITA
ADRGSPSTATTMNLTVHVDDANDNDPEFLQSSYSLTVREDIPRGTSLFQVQAHDQDIGPN
GQVRYTLTQASPFVVDAVRGVVTVMDKLDRERDSNYNLIITVVDQGNTPRSATAAVSVTV
LDINDFAPRFSPETLVLHVVENEDDPAQLTHQLSALDEDLGVNSQLTYFLQSGNSDGLFS
ITLNGTFQILHSLDRETQSLYVITIIAVDSGLPPLTGTLTVHVIVDDVNDNHPEFSEEVY
NTIVYEDSPPGTVFAMMMASDIDEGANGEIRYFMENPDVPFAVEETSGELLTTDVLDRET
VAIYRLTVISSDKHPTQPLSSSVLVTVLVGDINDHWPKFVNSPYVAHVPTEMAPGSVVCA
VKATDDDTEMNAELNYSLYGPSSDLFSIDPHSGTLFTSRALRRTEDVIVNIHVEDAGENP
KFDTATVSIRFQNISEFPEMNVDVLSSSLSEDEPVGTVVALLSAVSVRAEPVFFYLTSGN
FEDVFHVEQLTGALTVENPLDYENKKEFTLLVEARDSGSPPFSSFAEIHVNISDVNDNFP
QFTQAEYRCEIFENSPPSWVCDVLAIDADSGGYGTVRYNITDGNTDDFFTIEPESGLLST
TSSLDRETIPEFNLTVEASELENHFPKDRATVVIVVLDRNDNAPRFSRVFLTQVPEDAPV
GHTIIQITSTDDDWGPNAVINYSITDQSEDLPFSIEFTTGCLTVERPLDRETQDHYVLKV
NANDYAWSISTDVTIVVTDANDNRPVFSDPFYYAVLQETKDKEVFVTQVLATDADVGENS
DILYVIEPPNEEFWVNATSGEIYTKQPLALQMSSFEIYQFTVTAVDCGSDPLHSNATVTV
RLEPCNHHPPMFLPHQPQVAIPYHVAVGTEVVQFTALDVDVSNTSAYILYALNGGNASDF
FWIQANSGKVKLKRSLTETVHLFLILIVVAEDQGTPPLSSQTEITFEITGRNQYSPSFPE
PDVTFSVPEDLPVGSVIGRVQAEDRDYGVNAAIVYCIDPESLLLPFSVGEASGLLTLIRE
LDFEEELIHHLKIKAMDGGWATKTGWLNVTVVVMDVNDNPPVFSSSEYLTSVPENSEIGT
NAIHTKATDADSGRNALISYSLIAGHVDKFAIDSRNGTITTLDVFDYEREQIFDVTIKAS
NMAGLNLFTLAHVVIHILDVNEFTPTFTKKEFNFLVFKNVPVGTVMGKVTATDDDQGSAG
QVFFFMFGQNKNLGFKIHKLSGEIYTTASLRKQGNSEIVLKVLAKNAGVITGMDVDEALV
HIRVIDTNDAPVFTSEHYLANVTEDSPVGTSVMTVSALDQDSILDWSHFFFSIEAGNTNF
SFVVDPLSGVVSVNSPLDRELWAVYNLTVTATDNGSPPATGTSNVIVTVGDVNDNSPKLT
ITEAQVKENQPGGTIVARLNASDSDLPPNQGPFTYWLVNPSTDEAFSLTPDGVLFTTGPT
DREQTPAYHVLLAVRDAGIPALSTTTMFHIRILDENDNPSLPRNIFIEVKYFGSSFQGGM
IGNVHPEDQDESDTFICGIKSGPLNMFMIPNGTCELWSSPFQGEATFNITIEATDQLHFP
VNNSIYVTYKGFTNASIDSCILFYVSSSSMEEFLSNKYLRFVKALDSLFNLQASKTHVFG
IKHIGGEILLLAAVKNYNGEYLSREVASGVSAGHRKLLESQSNVTISHITSDPCLTSPCL
NGATCNKNIYISQDVAALESPGVIFVSPQKEVFNCTCPAGFTGTLCEDDIDECEVRFCQN
DGTCVNTAGSFYCHCQSGFSGSVCSTDVDECLKLKCQNGGTCLPNDDGYQCHCAPGFEGR
CCIYI
NT seq
6498 nt
NT seq
+upstream
nt +downstream
nt
atggaatctactggacgacagagaaaagttttgattttactgtttcctttttcggtgttt
aatattgcttcctctcatggaccctcgactggaaactcagtgaacacgagcagtgagaag
cagtttgcagattttgtcttaaggcagtttccattctcatctgttgatgttgtgccccag
caagacgcagtcagctcacactctcatgaccgatggagaacacaggcggcttcctccaga
ggtgtttattcatttgaagtgaaagaagacacggtaccaggaagagttgtgggaaagttg
gaaacagggtttgggagtcccacgcctatcacatattcagtgcaggaggatgacggagag
aacctgttcctcctcagccccctctcaggggagttcctattatcccgcagcctggatttc
gaggcacagagtatctacattctcacagtggtggtgcagcagggggattcacaggtatcc
agtgtcagggtgtacttcaatgtgttgaacgtgaacgacaacccccctgttttcagtcag
gatgccttttctgcgtcactgctggaagacgcacaggtcggagcatgcttcctgtccttg
aatgtgtcggataaagatgatggtgacaacggagagttgacactgaaagtgctggatgga
gctgaagagacagtgttcttcatgaactcagcgggaagcctatgcctgaacaaggagttg
gaccgagagagacaatcctcctacaatgtgaccgtgacggcgagtgacagtgtccagccg
gagtctctgcagctcaccagcacagcacacgtgatcgtggtggttcaggacgtcaacgac
aacgctcctctgtttgtgtcaggcacaagtgtccgtataccagaggacgctgctcttcac
tctgtggtgacgactgcacatgctgaggatggagatgctggatccaatggggaagtttta
tattatttaaacagcacctccagtggaatgtttagcatcaataccactagtggggaaatc
tccctggaggagaccttagatagagaacaggtagatacactgaccattaccattacagct
gctgacagaggctcgcccagcacggcaaccactatgaatctcacggtgcacgtcgacgac
gcaaacgacaacgaccctgagttcttgcagagttcttacagtctgacagtgagagaagat
atccccagaggaaccagcttgtttcaggttcaggctcacgatcaagacatcgggccaaac
ggacaagtgcggtacacgctgacgcaggcgagtccgtttgtggtggacgcggtccgaggt
gtcgtgacagtcatggataaactggacagagagagggactcaaactacaacttaatcata
acagttgtagatcagggtaacacacccaggtctgccactgctgctgtgagtgtcacagtg
ttggacatcaacgactttgcgccccggttttctccagaaacactggtcctacatgtcgtg
gagaatgaggacgaccccgctcagctcacacatcagctttcggctttggatgaagattta
ggggtcaacagtcagctcacctatttcttacagagtggaaacagtgatggtttgttctcc
atcactctcaatggcacttttcaaattctacacagcctggacagagagacacaatcacta
tatgtcatcaccatcattgctgttgattcaggactgccgccgctaacaggtactctcacc
gtacacgtcatagtggatgacgtcaacgacaaccacccagagttcagtgaggaagtgtac
aacaccatagtgtatgaggacagtccccccggcacagtgtttgccatgatgatggcatct
gacattgatgagggagccaatggggaaataaggtatttcatggagaaccctgatgtacct
tttgccgttgaggaaacatctggagagctgctgacaaccgatgtcctggaccgagagaca
gtcgccatttacaggttgacagtgattagcagcgataaacatcccactcagcctctgtcc
agctccgtgctcgtcactgtgctcgttggagacatcaacgaccactggcccaagtttgtg
aacagcccctatgtggctcacgtgcccactgaaatggctccaggctcggttgtttgtgca
gtgaaagcaacagacgacgatactgagatgaatgcggaactgaattattcattatatgga
ccgagttcagatctgttttccattgatccccacagcggcaccttgttcacttcaagagct
ctccggagaacagaagatgttattgtcaacatacacgtggaagacgctggagaaaatcct
aaatttgacaccgcaaccgtgagtatcaggtttcaaaacatctctgagttcccggagatg
aatgtggatgttctgagctcttccctctctgaagacgagccagtgggaaccgtagtggct
ctgctctctgctgtgagcgtcagagcggagcccgtctttttctatctgacgtctggaaac
tttgaagacgtgtttcatgtggagcaattaactggagcgctgacagtggagaaccctctg
gattatgagaacaaaaaggagtttaccttgttggtagaagccagagactccggctcgcct
cctttctcatcatttgcagagattcatgtaaacatcagcgacgtcaatgacaacttccca
cagttcactcaggcagagtacaggtgtgagatcttcgagaattccccgccatcctgggtt
tgtgacgttctggccatcgatgccgactctggtggttacggcaccgtgcggtacaacata
actgacggaaacactgatgactttttcacaattgagcctgaaagtggtttattgagcaca
acatcaagtttggacagagaaacaatccctgaatttaacttgacagttgaagcttccgag
ctggaaaatcatttccccaaagacagagcaacggttgtcatcgttgttttggacagaaat
gacaacgcacctcgtttttcacgggttttcctcacgcaggtacccgaggacgcccctgtt
ggacacacaatcatacaaatcacctccactgatgatgactggggccccaatgcagttatt
aattactccataacggatcaaagtgaagatctgccgtttagtattgagtttaccaccggc
tgcctcacagttgagagacccctggacagggagacgcaggatcattatgtcctgaaagta
aatgcaaatgattacgcgtggagcataagcacggatgtcactatagtcgttacagatgct
aacgacaatagaccagtattttctgatcctttttactacgctgtcctccaggaaacaaaa
gataaagaggtgtttgttacgcaggttcttgccacagatgcagatgtcggggagaatagt
gacattttatatgtcattgaacctccaaacgaggagttctgggttaacgctacctctggt
gaaatctataccaagcagccattggcgctacagatgtcttcttttgaaatctaccaattt
acagtgacggctgttgattgcggcagcgatcccctgcacagtaacgccactgtcacggta
agattagagccttgtaaccaccacccgccgatgttcctgccgcatcagcctcaggttgcg
atcccgtaccacgtggctgtcggaactgaggtagtccagttcacagcactagacgtggat
gtcagtaataccagtgcttatattctgtatgctctgaatggaggtaatgcatctgatttc
ttctggatccaagcgaacagtgggaaagtgaagttgaagagaagtttgacagagaccgtc
catttgtttctgattttaatagttgtggcagaagaccagggcaccccacctttatcgtcg
cagactgaaatcacttttgaaatcacggggaggaatcaatattctccgagttttccagag
ccagacgtcactttctccgttcccgaggacttgcctgttggatcggtaatcggaagggtt
caagcagaagatagggattatggtgtcaatgctgccatcgtgtactgcattgacccagaa
agtctactgttaccattctctgtaggagaagcctccgggctgctaacactcatcagagag
cttgactttgaagaggaacttattcatcatcttaaaatcaaagccatggatggaggctgg
gccacaaaaacaggatggctgaatgttacagttgtggttatggacgtgaacgacaatccc
ccagtcttttcctcctctgagtatctcacttcagtgcctgaaaactctgaaattggtaca
aatgccatacatacgaaggccactgatgctgattcaggtcgaaatgcactaatatcttat
tctcttattgctggtcacgtggataaatttgccatcgactcaagaaatggcacaatcact
actttggacgtgtttgattacgagcgagagcagatctttgacgtgacgatcaaagcctca
aacatggctggtctcaatttatttactttggctcatgttgtcattcacatattggacgtc
aatgagttcacgcctacgtttaccaaaaaagagtttaactttttggtatttaaaaatgtg
cctgtgggaactgtgatgggaaaagtaacggccacagatgacgaccaaggctctgcaggt
caggtgtttttcttcatgtttggccaaaataaaaacctgggctttaaaatccacaaactc
tcgggtgaaatttacacaaccgccagtttgaggaaacaaggcaacagtgaaatagtttta
aaagttctggcaaagaacgctggtgtcattacaggcatggacgtagacgaagccttggtc
cacatcagagtgatcgacacgaacgatgcacccgtgttcacctctgaacattatctggca
aacgtgacggaggacagcccggtcggcacgtctgtgatgactgtgagtgctctggatcag
gactccatcttggactggagccatttcttcttcagcatcgaagccggaaacacaaacttc
tcttttgtcgttgatccgctcagtggggtggtttcagtaaattctccgcttgacagagaa
ctgtgggcggtttataacctgactgtcacagccactgataacggctctccaccagccact
gggaccagtaacgtcattgtgaccgttggtgacgttaacgacaactctcccaaactcaca
ataactgaggctcaggtgaaggaaaatcagcctggaggcaccatcgtagccagattaaat
gcgtctgattctgatttgccaccaaaccagggaccttttacttactggctggtaaaccct
tctactgatgaagccttttcactgactcctgatggagttttatttaccacggggcccact
gatcgggaacaaacccctgcctatcatgttcttctcgctgtcagagatgcagggatccct
gcgctgtcgaccacgaccatgttccacatcaggattctggacgaaaacgataacccgtcg
ctgcccaggaacatcttcatcgaggtcaaatattttggcagctctttccaaggaggcatg
atcggtaacgtccaccccgaggatcaggatgagtccgacacatttatctgtggtataaaa
agcgggccgctgaacatgttcatgatacctaacggcacgtgtgagctgtggtcgtctcct
tttcaaggtgaggccacgtttaacatcacaatcgaagccacagaccagcttcacttccca
gtcaacaacagcatctatgtgacatacaaaggtttcacaaatgcttccatagacagttgc
atattattctacgtgtcatcgtcctcgatggaagagttcctgtccaacaagtatctgagg
tttgtgaaagctctggacagtctgtttaacctgcaggcctctaagacccatgtatttgga
atcaaacacattgggggtgaaatccttctgttggctgcggtcaaaaactacaacggtgaa
tatctcagcagagaggtggcgagcggcgtctctgccggacacaggaagttactggagtct
cagagcaatgtgacgatatctcacatcaccagcgacccatgtctcaccagcccctgtctg
aacggagccacgtgcaacaaaaacatttacatcagccaggacgtcgctgccctggagagc
ccgggcgtcatcttcgtgtcgccgcagaaagaggtttttaattgcacgtgtccagccggc
ttcaccgggacgctgtgtgaagatgacattgacgaatgtgaggtgaggttctgtcagaac
gacggcacatgtgtgaacacggcgggaagcttctactgtcactgtcagagcggcttttct
ggctcggtctgctccactgatgtcgatgaatgcctgaagctgaagtgccagaacggagga
acctgtttgcccaatgacgatggatatcagtgtcactgtgcgcctggatttgaaggtaga
tgctgtatatatatataa
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