Hippoglossus stenolepis (Pacific halibut): 118106166
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Entry
118106166 CDS
T08308
Symbol
robo1
Name
(RefSeq) roundabout homolog 1 isoform X1
KO
K06753
roundabout, axon guidance receptor 1
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
118106166 (robo1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
hsp04515
]
118106166 (robo1)
Cell adhesion molecules [BR:
hsp04515
]
Immunoglobulin superfamily
ROBO family
118106166 (robo1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
ig
Ig_2
fn3
V-set
C2-set_2
Pur_ac_phosph_N
Ig_5
FN3_DSCAM-DSCAML_C
Unc5_NetrinR_N
Ig_PDGFR_d4
Motif
Other DBs
NCBI-GeneID:
118106166
NCBI-ProteinID:
XP_047195529
LinkDB
All DBs
Position
4:complement(6845289..7056007)
Genome browser
AA seq
1695 aa
AA seq
DB search
MRGAWSGVTPLFIMLLLGMARGQELPIVPEIGVAQEGANDETTPAPTAEHDDDNSLGYTG
SRLRQEDTPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTVEWYKDGERVETDRDNPRSQ
RMLLPSGSLFFLRIVHGRRSKPDEGSYVCVARNYLGEAVSHNASLEVAILRDDFRQNPAD
VIVAAGEPAVLECMPPRGHPEPTISWKKDAVNIDDRDERITIRGGKLMITNARKSDAGKY
VCVGTNMVGERESEIAELTVLERPSFVRRPGSQVVLVDQSVEFRCEARGDPVPTVRWRKD
DGDLPKGRYEIREDHTLKIRRLTSADVGSYTCVAENLVGKAEASATLTVHVVSVPPAFVV
RPRNQVVGVGRTVTFQCEATGNPQPAIFWQREGSQNLLFSYQPPQPSSRFSVSQTGDLTI
TDAERSDVGYYSCQALNIAGSVITKALLEVTDVVSDRPPPVIRQGPTNQTVAVDGTVVLN
CMASSNPTPTILWRKDGVLVSTHDSRVKQLDTGALQIRYAKLGDTGTYTCIASTPSGEAS
WKAYLEVHEFGVSVQPNRPTDPNLIPSAPSKPEVTDVTRTSVTLSWKPNLNAGATPTSYI
IEAFSHASGSSWQTLAEHVKTESFVLKGLKPSAVYLFLVRAANAYGLSDPSPITDAVKTQ
DIPPTSQGVDHRQIQRELGEVLIHLHNPTILSSSSVRVQWTVEQQSQYIQGYKVMYRPSP
EGLQRSEWAVFEVRTPGEDSAVVPQLRKGVTYEFKLRPFFNEFQGTDSDVKIGKTLEEAP
GAPPREVTVTESGDNGTAIVVSWQPPPEEEQNGVVQEYKIWCLGNESRYHINRTVDGSTL
SVLIPSLAPGIRYSVEVAASTGAGPGVKSDTTFFQLDASGRMTDPDASENPLSQQISDVV
KQPAFIAGIGAACWIILMVFSIWLYRHRKKRNGLSSSYAGIRKVPSFTFTPTVAYQRGGE
GVSSAGRPGLLNIGESATQPWLADTWPNSCSNHNDCSMNCCTAGNGNSDSNLATYSRPAD
CIANYNNQMENKQTNLLAPESGVYGDVDLSNKINEMKTFNSPNLKDGRFVGPGGQPTPYA
TTQLIQSSIMGNNINSERGTGGSGGGPGGGGELNEKHCWKPTPVQQQQKQEMGSQLQYII
MEQNKLNKDRYRGGDNPMPATIPYNQTHDSHTGGSYNSSDRGSSSTSGSQGQKKGMRTPK
LPKQSTMNWADLLPPPPANPPPSRSTEEYSLPMEESCDPDMQCPMPPSHMYLQPHELEEE
EEEMERGPTPPIRGAASSPAAVSYSHQSTATLTPSPQEEMRPMLQDAPDSHERRRHGVSP
PAPQRPLSPSHTYGYNCSPLALDTDGMEEDDILEEDEEGDETDAEVAKMHYHHTHPHTHT
HPHHTQMHPRRLLLRGLEQTPASSMGDLESSVTGSMINGWGSASEEDNVSSGRSSAVSSS
DGSFFTDADFAQAVAAAAEYSGVRVAKYPNTHGQEVGGASARKYQINPSGHRPGSPVSTD
SNMSMAAVHRRPPKKQKQHPAVHPGNQRRDPYNEDLPPPPIPPPAGLKSPTHPSKAALEG
RGVVSPKTGEGRDKRGATGGYRPREGSDPRTSSSERKEAQERQKTAHGEKGNRHESSTAS
KARQHAGSEDILPYNRPQFPTVNSPRDPSSSSSMSSRGSGGRRRGEGGRRNQADMGLITT
GALQPGDEELEMAES
NT seq
5088 nt
NT seq
+upstream
nt +downstream
nt
atgcgtggtgcgtggtcaggggtgacacccctcttcataatgctcctgcttggaatggcc
cggggacaagagcttcctatagtcccagagattggagtcgctcaggaaggggccaacgat
gagacaacaccagctcccaccgcggaacacgacgatgacaactctttgggctacacagga
tctcgtctgcgccaagaggacaccccaccccggattgtggagcacccctctgacctgata
gtttccaaaggggagcccgccactctcaactgtaaggcagagggtcgtccaaccccaaca
gtggagtggtacaaggatggagagcgagtggaaacggacagggacaacccccgttctcag
cgcatgctgctgcccagcggctccctcttcttcttacgcatcgtccacggacgacggagc
aaaccggacgaaggctcctatgtctgtgttgcccgcaactacctgggagaggcagtgagc
cacaatgcctcactggaagtagccattctacgagacgactttagacaaaaccctgcagat
gtgatcgtggcggccggagaaccagcggtcctggagtgtatgcccccacgtggacatcct
gaacccaccatatcatggaagaaagatgccgtgaacatcgacgaccgagacgagaggatc
actatacgcggcgggaagctgatgatcacaaatgcccggaagagcgatgctgggaagtac
gtgtgtgtcggcacaaacatggttggagaacgtgaaagcgaaatagctgaacttacagtg
cttgagcgtcccagctttgtccgtcgcccaggcagccaggtggtgttagtggaccaaagc
gtagagttcaggtgtgaggcccggggtgacccagttcccaccgtgcgctggaggaaagac
gacggtgacctgcccaaaggaagatatgagattcgcgaggaccacaccctgaagatccgt
cgtctgacctcggctgatgtgggctcctacacctgtgtggctgagaacctggtgggcaag
gcggaagcatcggccacgctcaccgtccacgtcgtgtctgtgcccccggcatttgtggtg
agaccaaggaaccaggtggttggggttggcagaaccgtcactttccagtgcgaggccact
ggaaacccgcagccagccattttctggcagcgggaaggcagtcagaacctgctcttctcc
taccagcctcctcaaccctccagccgattctctgtatcccagactggggatctgacgatc
actgacgccgaacgctcagacgtgggatattacagctgccaggccctcaacatcgctggc
agtgtcatcaccaaggctctgctggaggtcactgatgttgtgtcggatcgcccgccgcca
gttatccgccaaggcccgaccaatcagacggtggccgtggacggcacggtggttctcaac
tgtatggcatcgagtaaccccactcctaccatcctctggaggaaggatggagtgctggtg
tccactcacgactccagggtcaaacagctggacacgggcgctctgcagatccgctatgca
aagctcggtgacactggcacctacacctgcatcgcctccacacccagcggcgaggcctcg
tggaaagcttatttagaggttcacgagtttggagtttcagtccaaccaaacagacccact
gaccccaacctgatccccagtgccccttccaaacctgaggtcactgacgttacccgcacc
tccgtcaccctttcctggaagcctaaccttaacgccggagccacgcccacctcctacata
atagaggccttcagtcatgcatcagggagcagctggcagaccttggcggagcatgtgaaa
actgagtcatttgtactgaagggcttgaagcccagcgcagtctacctcttcttagtgcgg
gcagccaatgcctatgggctgagtgatcccagtcccatcactgatgctgtgaaaacccaa
gacatccctcccaccagtcagggtgtggaccaccgtcagatccaaagggagttgggggaa
gtgctgatccacctgcacaaccccaccatcctctcctcctcgtctgtcagggtgcagtgg
acagtggagcagcagtctcagtacatacagggctacaaggtgatgtacaggccttcaccg
gaggggctgcagaggagcgaatgggccgtgttcgaggtgcgcacgcccggggaggacagc
gccgtcgtgccacagcttcggaagggagtcacatatgaattcaaactccgccccttcttc
aatgaattccagggaacagacagcgatgtcaaaattggcaagacgctggaggaagccccc
ggcgcccctcctcgtgaggttacagtgacggagagtggggacaatgggactgccatcgtg
gtctcctggcaaccccctccggaagaggaacagaatggggtggtccaggagtacaagatt
tggtgtttggggaacgagagtcggtaccacatcaaccgtacagtcgacggctcaacctta
tccgtgctgatccccagtctggccccggggatccgctacagcgtggaggtagcggccagc
accggggcgggtcctggggtcaagagcgataccaccttcttccagctcgatgcatctggg
cggatgacagatcccgacgcctcagagaaccccctgtcccagcagatctccgacgtggtc
aagcagccggccttcatagccggcatcggagccgcctgctggatcatcctcatggtcttc
agcatctggttgtaccgacaccgcaagaagaggaacggcctctccagcagctatgcaggc
atccgcaaagtgccgtcctttactttcacaccaacagtggcatatcagagaggtggagaa
ggtgtgagcagcgccggaaggcctggtttgctgaacatcggggaatctgccactcagccc
tggctggcggacacatggcccaactcctgctccaaccacaacgactgcagcatgaactgc
tgcaccgctggcaacggcaacagtgacagtaacttggcgacgtacagccgaccagccgac
tgcatcgccaattataacaaccagatggaaaacaagcagaccaacctcctggcgccggag
tcgggagtctatggagatgtggacctgtccaacaagatcaatgagatgaagaccttcaac
agccccaacctgaaagacggacgctttgtgggtccggggggccagccgacaccttacgcc
accacccagctcatccagtcctccatcatgggcaacaatataaactcggaaagaggcacc
ggagggagcggaggtgggcccgggggtggaggggagctgaatgagaaacactgctggaag
cccaccccggtccagcagcagcagaaacaggaaatgggctcgcagctgcagtacatcatc
atggagcaaaacaagctgaacaaggaccgctacagaggaggagacaatcctatgccggcc
accatcccctacaaccagacccatgacagccacactgggggctcctacaacagctccgac
cgaggcagcagtagtacctccggcagccagggccagaagaagggaatgcgcacccccaaa
ctacccaaacagagcacaatgaattgggctgacctgctgccccctccccctgcaaaccca
ccccccagtcggagcacggaggagtactctctaccaatggaagaaagctgtgacccagac
atgcagtgccccatgcccccgtctcacatgtacctgcagcctcatgagctggaggaggag
gaagaggagatggagcggggccccactcctcccatccgaggggcggcatcttcccctgct
gctgtgtcttacagtcaccagtccacggccactctcaccccctcaccccaggaggagatg
cggccgatgctccaggatgcgcccgacagccacgaacgcaggcgccatggtgtaagcccc
ccagcgcctcaaagacccctctccccttcacacacatatgggtacaactgcagcccgttg
gccttggacacagacggcatggaggaggacgacatattggaggaagacgaggagggggac
gagacagatgcagaggtggccaagatgcactaccaccacacccacccccacacacacaca
caccctcaccacacccaaatgcacccgcgaaggctgctgctacgagggctcgaacagacg
cctgcgtccagcatgggtgacctagagagttcagtgaccggctctatgatcaacggatgg
gggtcggcctctgaagaggataatgtctcttcggggaggtctagtgcagtcagctcttca
gatggatccttcttcactgatgctgactttgcccaagcggtcgctgcagctgcagagtat
tcaggcgtcagagtggccaagtaccccaacacacatggccaggaggttggaggagcttca
gcacgaaaataccaaataaacccatcaggccaccgtccaggcagcccggtgtctacagac
agtaacatgagtatggcagcggtgcacaggaggcctcctaaaaagcagaaacagcatcct
gcagtccatccaggcaaccagagacgtgatccatacaatgaagatctcccccctcctccc
atccctcctccagcagggctcaagtcccccacacatccctccaaggcagcactggagggc
cggggggtggtttcccccaaaacgggcgagggtcgagacaagcgaggagcgacaggaggc
taccgcccccgagagggttcggaccccagaaccagctcctctgaacgcaaggaggctcag
gagagacaaaagactgctcatggagagaaagggaatagacacgagagtagcactgccagc
aaggcacgccaacatgcaggttcagaggacattctgccctacaacagaccacagttccca
acagtcaacagcccccgagacccgagctcctccagctccatgtcctctcggggttcaggg
ggccggcggagaggagagggaggccgcaggaaccaagcagacatgggcctcatcaccacg
ggggccttacaaccaggagatgaagagctagagatggcagaaagctga
DBGET
integrated database retrieval system
