Hippoglossus stenolepis (Pacific halibut): 118106253
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Entry
118106253 CDS
T08308
Name
(RefSeq) transcription initiation factor TFIID subunit 4 isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
118106253
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsp03021
]
118106253
03036 Chromosome and associated proteins [BR:
hsp03036
]
118106253
Transcription machinery [BR:
hsp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
118106253
Coactivators
SAGA/TFTC/STAGA complex
118106253
Chromosome and associated proteins [BR:
hsp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
118106253
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
TAF
Motif
Other DBs
NCBI-GeneID:
118106253
NCBI-ProteinID:
XP_035010543
LinkDB
All DBs
Position
1:24200102..24290167
Genome browser
AA seq
1082 aa
AA seq
DB search
MAGASDPLEDMLFSEVDEKAVSDLVGSLESQLTGQTNPAAKTDENGGAGSETPANHLLGK
PLPAPVGTTTLEQQQQGRRNKPEMRPEINSKDASPDKSVTAASLGCSPSVRESATTNSSA
ASVSAAGSSGSQSHGASITTLTAPGVSTLASPPASISTTPATSRGCKGSPGTGEPSTEAS
PARKRFTTPRRSAAARIKSFNGAAVTTRRNSNTVGGETVSPVDSSPPNPSTRPLTAAINT
STFTVSNASLPEGQSAIALDRGTPTIALHRLPSHIVASIAQNGNGTSVSALVQQGTRTGA
ATCSAAQENHSKTITDTGASKADDCQSKIVMSSQPVSVNSVINSVPSAPSVVTPTTTTTT
TTTTAADTTATTVKPPLSSATAPACVTGVATSSACGTGQTTSVTTTTTTVCMVRPTAPSP
APAVATPAQFQPRPGLTAPQRIVAPQLIVRPPQQQTTIQLPPGFTIPPGMVLVRTELGQL
VMVPQQALAQAQAQAQAQAQNNISPRPATPTTGTSFRVTTPQSPVTSQTARQCPVTVTKM
APSPSPTPSSPALQTSSSSSSSSSCPALRPKGPVAPAIAVTAPQQTPVVMAPQAPAQAAS
QPVQPPQTGIAAAPGASIVSQEMQENVKKCKNFLATLIKLASHNSPSPETSKNVKSLVQD
LLDAKIEPEEFTSRLQTELKSSPQPYLVPFLKKSLPALRLSLLSSQQSLTQPLQQGVKPA
PCGVPPAIVSGPAVRIRHPNSVSTTTGASALPAGTLGHAAAMGIKTAGAVGGQVRMPVVI
TQSVRAQGTMGKGVVNQAGKSPMGLAVQISGNQKNKLNDPGGGSFRDDDDINDVASMAGV
NLNEESARILATNSELVGTHIRSCKDEAFLHPGLLHRRILETAKKFGVTEVPMEAVTFIS
HATQSRLRTVVEKVSTIAQHRLDSCKDECYEQSADVRSQLRFFEQLERIEKQRKDEQERE
ILLKAAKSRSRQEDPEQARLKQKAKEMQQQELAQIRQRDANLTALAAIGPRKKRKVDSPG
ATPSGTEVSGSTAGSPASSSVPSTSSRQRQRITRVNLRDIIFYMEQERETAHSLLLYRAL
LK
NT seq
3249 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcgcctccgaccccctggaagatatgctcttttcagaggtggacgagaaagct
gtgagcgacctggtgggctcgctggagtcgcagctcaccggccaaacgaaccccgcggcc
aagacggacgagaacggaggcgctggctccgagacccccgctaaccatctcttaggaaaa
ccgctaccagctccagtgggcaccacaacactggaacaacaacaacaaggacggcgtaat
aaacccgagatgcgcccggagatcaactccaaagacgcgagtccggataaaagtgtcaca
gccgcttctctgggctgctccccgtctgtccgcgagtccgccaccaccaactcctcggct
gccagtgtgagcgcagcgggcagcagcggctcgcaatcacatggagcatccatcacaaca
ctgacggctcctggcgtgtcaactttggcgtctccgcccgccagcatcagcaccaccccc
gccaccagccgcggctgcaagggctccccgggcacaggtgagccgtccacggaagccagc
ccggcgagaaaacgcttcaccacgccgcggaggagcgccgcggctcggataaagagtttc
aacggcgccgctgtgacgacgcggaggaacagcaacacggtgggtggagagaccgtcagc
ccggtggattcaagtccaccgaacccctccactcggccgctgacagccgctatcaacact
tccactttcacggtgtctaacgccagcctgcccgagggtcagtccgctatagccctggac
cgggggacgcccaccatcgccctgcacagactccccagtcacatcgtggccagtatcgcc
cagaacggaaacgggaccagcgtctctgccttggtccagcagggcacccgcacaggagcc
gccacctgctcagctgcacaggagaaccacagcaaaacgatcacagacactggggcttcc
aaagcagacgattgtcagtccaaaattgtaatgtcaagccagcctgtcagtgtgaactct
gtaataaactccgttccctctgcaccttctgttgtcacgccaacaacaacaacaaccacc
accaccaccacagcagcagatacaacagccacaacagtaaagccgcctctgagctctgcc
acagcccctgcttgtgtcacaggggtggcaaccagttctgcatgtggcactggtcagact
acatcggtgaccaccaccaccaccactgtttgcatggttagacccactgccccctcacct
gcacccgctgtggccacccccgcacagtttcaaccccgtcctggactcacagcaccccag
aggattgtagccccccagctgattgtcagaccacctcagcagcagacgaccattcagctg
ccccccgggtttaccatcccaccgggaatggtgttggtgcgcacagagctgggccagctg
gtcatggttcctcagcaggctttggctcaagctcaggctcaagctcaggcccaggcccag
aacaacatctctcctcgacctgcgacccccaccacgggaacatccttcagagtcacgact
ccacagtctcctgtgacctctcagaccgccaggcagtgtcctgtgaccgtgaccaagatg
gcaccatctccctctcccactccctccagccctgccttacagacctcctcctcttcctct
tcttcctcctcttgtcctgcgctccgcccaaagggccccgtggcaccggccattgctgtg
acggctccgcagcagacccccgtggttatggccccccaggccccggcccaggctgcctct
cagccagtgcagcctccgcagacgggcatcgcagcggcccccggagcttctatcgtgtcc
caggaaatgcaagagaacgtaaagaagtgtaagaatttcctggccacactaatcaaactg
gcgtctcacaactctccgtcccctgagacttccaagaacgtcaagtctctggttcaggac
ctgctggatgctaagattgaaccagaagaattcaccagccggctgcagacagagctcaag
tcgtctccgcagccgtacctggtgccatttctaaagaagagcctcccggccttgaggctg
tctttgctgagtagtcagcagtccctgacccagcccttgcagcagggagtcaaaccagca
ccctgcggggtccctcctgccattgtgagtgggccagctgtccgcatacgccaccccaac
agcgtcagcaccaccacgggtgccagcgcgctgcccgccgggaccctcggacatgcagct
gccatgggaatcaagacagcgggcgctgtcggtggccaggtgcggatgcctgtggtgatc
acacagtctgtcagagcacaaggcacaatggggaagggagtcgtcaaccaagcggggaaa
agtcccatgggcttggccgttcagatctctgggaatcagaaaaacaagctcaacgacccc
ggaggaggctctttcagggatgatgatgacatcaatgacgtggcgtccatggccggggtg
aacctcaacgaggagagcgctagaatactcgccaccaactcagagttagtgggaactcac
atccgctcatgtaaagacgaggcctttctccacccgggactgctacaccgacgaatactg
gaaacagctaagaagttcggagtcacagaggtccccatggaggcagtgacattcatctcg
cacgccacacagtcgcgacttcgcaccgtggtagaaaaggtttcgacgatcgcacagcac
cggctggactcctgtaaggatgagtgctacgagcagtctgcagacgttcgctctcagctc
cgcttcttcgagcagctggagagaatcgagaagcagaggaaggacgagcaggaaagagag
atcctgttgaaagccgctaaaagtcgctccaggcaagaggacccagagcaagctcgactg
aaacagaaagctaaggagatgcaacaacaggagctggcgcagataaggcagcgagatgcc
aaccttacagcactagctgccatcggaccccgcaaaaaacgcaaagtggattcaccagga
gccacgccatcagggaccgaggtttcaggcagcacggcggggtccccagccagctcctcc
gtcccgtccacctcatcacgtcaacggcaacgcatcacccgcgtcaacctcagggacatc
attttctacatggagcaggagagagagaccgcccactccctcctcctttaccgtgctctg
ctcaagtag
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