Hippoglossus stenolepis (Pacific halibut): 118106265
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Entry
118106265 CDS
T08308
Symbol
chd9
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
hsp03036
]
118106265 (chd9)
Chromosome and associated proteins [BR:
hsp03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
118106265 (chd9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
HTH_CHD1_Hrp3
DEAD
HDA2-3
Chromo_MIT1
Myb_DNA-bind_7
Motif
Other DBs
NCBI-GeneID:
118106265
NCBI-ProteinID:
XP_035010565
LinkDB
All DBs
Position
1:23245781..23319964
Genome browser
AA seq
3011 aa
AA seq
DB search
MEFFDDPGLFVGGLEGLDEDEFPSAPSLVDELNLSADFEPLHQVEPLGPGKPPDIMPPIS
TQVMPAYVQPMDPYIGIKGQNITGQTFSGHRGTGAGGGSIMPAQHGQYHNAAMSQVPQSN
GLFCNSSSPMWGNQDQNGNMFHPVSQQQQHPQQQRCHQQQQLHNQQLNVRQHIREQQHQP
CHDPQQEQQHRMRQQLQQQQSHQQQLLNQCQSQQINTQTMSLQQQQHHNFSFHQGSEQVH
HSQQRAQHQLSVGGQRFQSRALPNKSYLDSQNASLSGTCLQQHQQQHGSYRLTSGGRAFS
GSGLEDPNRPFPMHSSSMVLSLPTCSVSSAPAYQLAQYPAYPGEPEVPSLNQQSLSTASV
SGPTLTTNVSLTSTVSELSGTVCQFPSTGVLNQQHTKTPGSQEDECPFRALHCSGETQGS
SGSSEMFGESMSCYPTMAIQLPSEQPQSCGAINTNGYQALGDGLLTSEAQDGDLEGLEPP
DLLPDLLPQLEVALSQQDESNCSWASSSFSSSLERGHEHRKPPPVEYKEEKPRKNANGPG
SQVRVLSPPVKSSSSSSSSSSSSSSSSSSSSEKRTSRMTHQQMETSPLDKQEKANRIISE
AIAKARQRGEKNIPRVMSPESFPSSSSQYKSHRDRKHKGNGKARQKVKACRKACIVPSSK
PKQKAKIGKIVIKIGKKKKRKPESSEGESDDDPPTRHTSKDDSKRRSNRQVKRKKYAEEL
EARLSDEEVKVIVKAKKSNKEPALQLFVENPSEEDAAVVDKIMSSRVLKKEVSPGVVVEV
EEFFVKYKNYSYLHCEWATEQQLVKDKRIQQKIKRFKMKQAQRALFFANMEEEPYNPDYV
EVDRVLEVSYCEDKDTGEEVVYYLVKWCSLPYEDSTWELKDDVDQSKIEEFEQLQAAKPD
SRRMERPPANLWKKREHSRAYKNGNSLRDYQLEGVNWLLFNWYNRRNCILADEMGLGKTI
QSITFLEEIYRVGIKTPFLIIAPLSTIANWEREFRTWTNLNVIVYHGSMVSRQMLQQYEM
YFRDTQGRVIRGAYKFQALITTFEMILGGCPELNAIEWRCVIIDEAHRLKNKNCKLLEGF
KLMNLEHKALLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEFGDLKTESQVQKLQGI
LKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLAKGAGQSNVPNL
VNTMMELRKCCNHPYLIKGAEEKIMEDFREVYSPTAIDFHLQAMVQSAGKLVLIDKLLPK
MKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPESDRFV
FLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLITRNSYE
REMFDRASLKLGLDKAVLQSMSGRDNSLGGGAAGGGAVQQQLSKKEIEDLLRRGAYGAIM
DDEDEGAKFCEEDIDQILQRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWDK
WAKKADIDMDMVNGRNSLVIDTPRVRKQTRPFSATKDELAELSEGDSDSDETKPKLRRNH
DRLNSYGRTECFRVEKNLLVYGWGRWKDILNHGRFKKQLTDRDVESICRALLAYCLVHYR
GDDKIKSFMWDLIAPTEDGHTKELQNHLGLSAPVPRGRKGKKMKTQSSAFDIHKAEWLRK
HNPEHMLQDDGYKKHLKHHCNKVLLRVRMLYYLKQEVIGSQAQNVLDGVDSSEIKIWVPE
PDHSELPALWWDAISDKCLLLGIYKHGYEKYNTIRADPTLCFLDRVGRPDEKAIAAEQRG
NDFMDGDVDDPEYKPAPALLKDDMEDDASSPGDLVVTDNPGDPDPVPVREGETAYWPSSS
VLTARLRRLITASQRYTKSRQILHIHQSQSQSQPSMILSAPLCPLPPTLNDTLNPKMAAK
IERQQRWTRREEADFYRVVSTFGVVFDPTLGCFDWTKFRAMARLHKKTDESLQKYLCAFT
AMCRRVCRLPPKEGDSAVDPSLTIQPITEERASRTLYRVELLRQVREQVLRHTLLFERLS
LCQMSSDLPVWWEAGTHDRDLLIGAAKHGVSRTDYHILRDPELSFMAAQRNYSQTKTAQQ
QSHTSTPLLHTQHQAPSSVLTGSPLPLVAQRDTESCGLVPKLEPTSEGEESREKPAESWS
PRQAPATPTGLEEKPVLETRDNETQMVAARTKPLTPNSSERKPKKASKRGRRETRRGSES
NSDGSSSSSSSRSSSSSSSSSSSSHSGSSSSSSSSCSSGSSSSSSSSSSSSDDSESEGEE
GKKKVPVATSVKGFDEDSVASLSTTQDETQDIHVAENGINHNASHPFQGGGYMLAASYWP
KDRVIINRLDSICQAVLKGKWPGTRRVYEPGGAVASFYTTKLLDNANSLCEDPSASPQGS
KVTKHVAENKEFSVKLNDQEGGLKLTFQKQGVPLKRPLESEDGPQAQQQYLARLHELQSA
SDTGLADITKPQCSFQTVPPALTGQMRLNGVLDGQPVVKKRRGRRKNVEGMDLLFMNRSK
VPSVPDQVPPGWGGIGQVGTGTTSAPSSSQVPADTESRVPVINLKDGTRLAGDDAPRRKD
LEQWMKEHPGFVADTGAFIPGVNKMQMQFHFQDGRPKQKRHRCRNPNKIDVNSLTGEERV
QIINRRNARKVGGAFAPPLKDLCRFLQENPEYGVPPEWADVVKQSGYLPESMYDRILTGP
IVPEEVSRRGRRPKNPLAKAAAAAGGPSTAASTLGLNPLLANGLLSGMDLTSLQAFQQNL
QSLQSLQLTAGLMGLPSDASNLAASNLAAMFPMMLSGMAGLPNLLGMSGMLGKPAHEGAG
GSEEKTKGTTSGAAGQPSASKAPSQTSDTKGERTESLSTTPCSASNSSSSATAPQSASAA
SAASSHPLSLNPLLLSSMLYPGMLLTPGLNLPVSATQSQSSNTDPTLPPAPFPPPPKPSK
SSTRETVRPAGAEKDGHEDEELDDDDEEEEEEEAEQKENSGPEGSGKGETSSSESGSSSS
SSDDSDSSDED
NT seq
9036 nt
NT seq
+upstream
nt +downstream
nt
atggaattctttgacgatcccggcctctttgttggaggtttggaagggctggacgaggat
gagtttccctcagcaccctcacttgtggatgagctgaacctcagtgctgattttgagccc
ctccaccaagtagagcctctgggcccaggaaagccgccagacataatgcccccaatttct
acccaagtgatgcccgcttatgttcaaccgatggatccctatattggcattaagggacag
aatattacagggcaaacattttctggtcatagaggcacaggtgctggaggtggcagcata
atgccagcgcaacatggccagtaccacaatgccgccatgagccaagtgcctcagtccaat
gggctcttttgtaacagtagcagtccaatgtggggcaaccaagaccagaatgggaatatg
ttccaccctgtatctcaacaacagcaacatccgcaacaacagcgttgtcatcagcagcag
caactgcacaaccagcaacttaatgtcagacaacatatacgagagcaacaacaccaaccc
tgccatgatccacaacaggagcagcagcacagaatgaggcagcagctgcaacaacagcaa
agtcatcagcaacagctgttaaaccagtgccagtcccaacaaattaacacacagactatg
tccctgcagcaacagcagcatcacaatttctcatttcaccagggaagtgagcaagttcac
catagtcagcagcgggctcagcaccaactatctgtaggaggacagagattccaatcaagg
gctctgccaaacaagtcttatttggatagtcagaatgcttctctgagtgggacttgctta
cagcaacatcagcagcaacatggttcctaccgtttgacctcaggaggccgagccttctct
ggatcaggactggaagacccaaaccggcccttccccatgcattcatcatctatggttctc
tccctgcccacatgctcagtcagttctgcccctgcttaccaactggctcagtaccctgct
taccctggagagcctgaagtacccagtctcaatcagcagtctttgtccacagcctcagtg
tcaggtcccacactcaccaccaatgtatctctcacttccacagtgtctgagctctcaggg
acagtatgtcagtttccatccacaggagttttgaatcagcagcacactaagaccccaggt
agccaagaagatgaatgtcctttccgggccctacattgttctggcgaaacccaaggaagc
agtgggtcatctgagatgtttggtgaatccatgagttgctacccaaccatggccatccag
ctgccctctgaacagcctcagagctgcggggccatcaacactaatggataccaggctttg
ggagatggtctcctcacatcagaggctcaggatggagacttggagggactggagcctcct
gacctcttgcctgacctactgccccagctggaggttgctctcagccagcaggatgaatcc
aactgttcctgggccagttccagtttcagttccagtttggagaggggacatgagcacagg
aaaccaccacctgttgagtacaaggaagagaagccacgaaagaatgctaatggtcctggc
agccaggtacgggtcctcagccccccagtgaagagcagctcgtcgtcttcctcgtcgtcc
tcctcgtcttcatcctcatcaagctcctcgtcagagaaaaggacatcgcggatgacgcat
cagcagatggagacatctccactggacaagcaggagaaggccaataggataatatcagag
gctatcgcaaaggcccggcagcgcggggagaagaacatcccccgggtcatgagccccgag
agcttccccagctcttcctcacagtacaagtcccaccgtgaccgcaagcacaaaggaaac
ggcaaggcacggcagaaagtgaaggcatgtaggaaggcctgcattgtcccctcctccaag
cccaagcagaaggccaagattgggaaaattgtcatcaagattggaaagaagaaaaagcga
aaaccagagtcttcagagggggagtctgacgatgaccctccaactcgacacacctctaaa
gatgattctaagaggagatctaatcgccaggtgaagaggaagaagtacgctgaggagctg
gaggccaggttgtccgatgaggaagtcaaggttatagtcaaggccaagaaaagcaacaag
gagcctgctcttcaactctttgtcgagaatcccagtgaagaagatgctgctgttgtcgac
aaaataatgtcttctcgtgtccttaagaaggaggtctctccaggagttgtcgtcgaagtg
gaggagttttttgtaaaatataaaaactactcctacctacactgtgagtgggccacagag
cagcagctggtgaaggacaagaggattcagcagaagatcaaacgcttcaagatgaaacaa
gcacagagggcactcttcttcgcaaatatggaggaggagccctataaccccgactatgta
gaggtagacagagtgctggaggtgtcgtattgtgaggacaaagacacaggagaggaggtg
gtgtactacctggtgaagtggtgctctctgccttatgaggacagcacctgggagctaaag
gacgacgtggatcagagcaagattgaagagtttgagcagctgcaggcagccaagccagac
tcacgcaggatggagcggcccccggccaatctgtggaagaagagggagcactcgagggca
tacaagaacggcaacagcctcagggactaccagctcgagggagtcaactggctcctcttc
aattggtacaacagacggaactgcatcctggcagatgagatgggcctgggaaagactatc
cagtccatcacgttcctagaggagatctatcgtgtgggcatcaagacgcctttcctcatt
attgccccgctctccaccatcgccaactgggagcgtgaattccgcacttggaccaacctc
aatgtgatcgtctaccatggaagcatggtcagcagacagatgctgcagcagtacgagatg
tatttcagggacacacagggtcgtgttataaggggcgcctacaagttccaggctctgatc
accacatttgagatgatcctgggaggctgtcccgagctcaacgccatagagtggcgctgt
gttatcatcgacgaggcccaccgcctcaagaacaagaactgcaagctgctggagggcttc
aagctcatgaatctggagcacaaggccctgctgacagggactcctctccagaacacggtg
gaggaactcttcagtctgctccacttcctggaaccttcacgtttcccctctgagaccacc
ttcatgcaagagtttggagacctcaaaacggaatcgcaggtgcagaagcttcagggaatc
ctgaagcccatgatgctgcggcggttgaaggaggatgtggagaagaagttggctccgaaa
gaggaaaccatcatcgaggttgagctcaccaatattcagaagaaatactaccgcgccatc
ctggagaaaaacttctctttcctggctaaaggtgctggccagtcaaacgtgcccaatctg
gtcaacactatgatggagctgagaaagtgctgcaaccacccctacctcatcaaaggggca
gaagagaagatcatggaggatttcagggaagtttacagccccactgccatcgactttcac
ctgcaggccatggtgcagtctgccgggaagctggtcctcattgacaaactgctgccaaag
atgaaggcaggagggcacaaggtgctcattttctcccagatggtgcgctgcctggacatc
ttggaagactacctcattcagagaaggtacctatatgagcggatagatggacgtgtgcgt
gggaatctgcggcaggctgccatcgaccgcttcagtaagcccgaatcggaccgcttcgtt
ttcttactgtgtacacgggctggtggcctgggaatcaacctcacagcagcagacacctgt
atcatttttgactctgactggaacccacagaacgacctgcaggcccaggctcgctgccac
cggattggtcagaacaaggcggtgaaggtgtatcgcctgatcaccaggaactcgtacgag
cgggaaatgttcgatcgtgccagtctcaaacttggcctggacaaagcagtgctgcagagc
atgagtggtcgagataacagcctgggaggaggagctgctgggggaggggcggtgcagcag
cagctgtctaagaaggagatcgaggatctcttgcgacgtggtgcttacggggccatcatg
gatgacgaggatgaaggggccaaattctgtgaggaggacatcgaccagatcctccaacgc
aggacaaagaccatcaccatagagtctgaaggacgaggctccacctttgctaaggccagt
tttgtggcatctggaaaccgtacagacatttctctggatgaccccaacttctgggacaag
tgggccaaaaaggccgacatcgatatggatatggtcaatggcagaaatagtttggtgatc
gatactcctcgggtcagaaaacagacgaggccattcagtgccaccaaggatgagctggcg
gagctttcagagggcgacagcgacagtgacgaaaccaaaccgaagctccggcgaaaccat
gaccgactcaacagctacgggcgcacagagtgtttcagagtagagaagaacctgcttgta
tacggatggggtcgatggaaggacattctcaaccatgggcgttttaagaagcagttaaca
gaccgggatgtagagtcgatctgcagggctctactggcatactgcctggtccattaccgt
ggagatgacaaaatcaaaagcttcatgtgggacctgattgctccgactgaggatggacac
accaaggagctgcagaatcacctcggtttatctgccccagtcccccggggcagaaagggt
aagaagatgaagacacagtcgagcgcttttgacatccacaaagcggagtggctcaggaaa
cacaacccggagcacatgctgcaggacgatggctacaagaaacacctcaaacaccactgc
aacaaggtgctgctcagggtcagaatgctctactacctgaaacaagaggtgataggaagc
caggcccagaatgtgctggacggcgtggactccagtgagataaagatttgggtgccagag
cccgaccattcagagctgccagccctgtggtgggatgccatctccgacaagtgtctactc
ctgggtatatataagcatggttatgagaagtacaacactattcgtgcagaccctacactg
tgcttcctagaccgtgtggggcgaccagatgagaaggccatcgctgccgaacagagaggc
aatgatttcatggatggggatgtggatgatccagaatacaagcctgctcctgctctactg
aaggacgatatggaggatgacgcctcttctcctggagacttggttgtcactgacaatcct
ggagatccagatccagttccagtgagagaaggtgaaaccgcctactggccctcgtcctcg
gtgttgacagccaggctgaggcgtctgatcacagcctcccagcgatacaccaaaagtcgg
cagatcctccacatccaccagtctcagtctcaatcccagccgtccatgatactgtctgct
ccgctctgcccgctgccccccacactcaacgacaccctcaaccccaagatggctgctaag
attgaacgccaacaaaggtggaccaggcgagaagaagctgacttctaccgggtggtctcc
actttcggtgttgttttcgatccaaccctcggctgcttcgactggaccaagttcagggcc
atggctcggctgcacaagaagactgacgagagcctgcagaaatacctgtgtgctttcacc
gccatgtgccgacgggtgtgccgcctgccacccaaggagggagactctgcggttgaccca
tctctcaccatccagcccatcacagaggagcgagcgtctcgcaccctgtacagagtagag
ctgcttcgccaggtgagggaacaagtccttcgacatacattactctttgagcgcctctcg
ctgtgccagatgagctctgacttacccgtctggtgggaagctggtacccatgaccgtgat
ctgctaattggtgcggccaagcacggcgtgagtcgcacagactaccacattctgagagac
cctgagctcagcttcatggctgcccaacgcaactacagccaaactaaaactgcacagcag
caatcacacacatccacaccactcctccacactcagcaccaggcccccagctcggtgttg
acaggttctccgctgcctctggtggcccagagagacacagagtcctgtgggcttgtgccc
aaattggaacccacctcagagggggaggagagcagggagaaaccggccgagagctggagc
cctcgtcaagcaccagctactcccacaggtctcgaagagaagcctgttctagagacgagg
gacaatgagacgcagatggtggcagcacgaaccaaacctctcacacccaactcctcagag
aggaaacccaagaaggctagcaagagaggccgtcgggagaccaggcgtggctcagagtct
aactcagatggctcctcttcaagctcttcatcccgctcctcctcttcatcatcttcctct
tcttcctcgtcacattccgggtccagctcctcctcttcttcatcttgctcctctggctct
tcatcgtcgtcctcctcctcctcctcatcttctgatgacagcgaaagtgaaggagaggaa
ggaaagaagaaagtgcctgtcgcaacaagtgtaaagggcttcgatgaggacagcgtggca
tcactgagcacaacacaggatgaaacacaagacattcatgtggctgagaatggaatcaac
cacaacgcctcgcatcctttccagggaggaggatacatgctcgctgcatcctactggcca
aaggatcgtgtgattatcaaccgcctagacagcatctgccaggcagtgctgaagggcaag
tggccgggaacacgccgggtatatgagcctggaggtgctgtggcctccttctacaccacc
aagctgctggacaatgccaacagcctgtgcgaggacccctctgcctcgccacaggggtca
aaggtgaccaagcatgttgcagaaaacaaggagttctcagtaaaactcaacgatcaggag
ggaggtctgaagttgaccttccagaaacagggtgtacctctgaagaggcccctggagtcc
gaggatggcccccaggcccagcagcagtacctggcccgccttcatgagctgcagagcgcc
tcggacacagggctggctgatatcaccaagcctcagtgcagcttccagactgtacctcca
gctcttactggtcagatgaggctgaacggagtactggacggccaacccgtggtcaagaag
cgaaggggaaggaggaagaacgtagagggaatggacctgctcttcatgaacaggagcaaa
gtcccttctgttcctgatcaggtacctccaggttggggtggtatcggccaggtgggcacg
gggacgactagtgcaccaagctccagtcaggtccctgcagacacagagagcagggtccca
gtcatcaacctcaaagacggcacccgccttgctggggacgacgcccccaggaggaaagat
cttgaacagtggatgaaagagcacccaggctttgtagcagatacaggagcttttattcct
ggggtaaataagatgcaaatgcagttccacttccaggacggccggcccaagcagaagagg
caccgctgtaggaatccaaacaagatcgacgtcaacagcctaacaggagaggaacgagtc
caaatcatcaacaggagaaacgcacgcaaggttggtggagcctttgctcctcctctgaag
gatctgtgcaggttccttcaggagaacccggagtacggagttccacctgaatgggcagat
gtggtcaaacagtcgggttacctcccagagagtatgtatgacaggattctgacaggaccc
attgttcctgaggaggtgagtcgacgtggacgtcgacccaagaatcctcttgcgaaggca
gcggcggcggcaggaggacccagcacagcagcctccaccctcggcctgaatcccctgctg
gccaacggcctcctctccggaatggacctcaccagcctgcaggccttccagcaaaacctc
cagagtttacaatccctgcagctgaccgcaggcctgatggggctgccatccgacgcaagc
aacctggccgcgagcaacctagccgccatgtttccaatgatgctatctggtatggccgga
ctgccaaacctgcttggcatgagcggcatgcttgggaaacctgctcatgagggcgcagga
ggctcagaggaaaagacaaagggaaccaccagtggtgcagcaggacagccgtctgcctct
aaagccccttctcaaacctcagacaccaaaggagaaaggacagagagtttgagcacgact
ccttgctcagcgtccaactcctcttcctcggccactgccccacaaagtgcttcagctgcc
tccgcagcctccagtcacccactgtctcttaaccccttgttactctccagtatgctttac
ccagggatgcttctcactccaggccttaaccttcctgtgtctgccacacagtcgcagagc
tctaacactgaccccacccttcctcctgctccttttcctcctccgccaaaaccctccaag
tcatcgacgcgggagacagtacggccagcaggagcagaaaaggacggtcacgaggacgag
gagttggatgacgacgacgaagaggaggaggaggaggaggcagaacagaaagaaaacagt
ggtcctgaaggttcgggtaaaggcgagacgtcttcatcagagtctgggagctcctcctca
tcctcggatgattcagactccagtgatgaggactga
DBGET
integrated database retrieval system
