Hippoglossus stenolepis (Pacific halibut): 118106305
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Entry
118106305 CDS
T08308
Symbol
brip1
Name
(RefSeq) Fanconi anemia group J protein isoform X1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03440
Homologous recombination
hsp03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
118106305 (brip1)
03460 Fanconi anemia pathway
118106305 (brip1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hsp03400
]
118106305 (brip1)
Enzymes [BR:
hsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
118106305 (brip1)
DNA repair and recombination proteins [BR:
hsp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
118106305 (brip1)
FA (Fanconi anemia) pathway
Downstream FA components
118106305 (brip1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
HBB
Motif
Other DBs
NCBI-GeneID:
118106305
NCBI-ProteinID:
XP_035010626
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All DBs
Position
4:18867549..18908179
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AA seq
1245 aa
AA seq
DB search
MAKSPVEYTIGGVKIHFPCKAYPSQLAMMNSIVRGLNYGQHCLLESPTGSGKSLALLCSA
LAWQQAQFAKLHEGGNPVDVKNQSDKSPDACKKPDVSTCCQCVCHSKAKLVSATVDVKPA
VVDLTVSPLKDQSIALQLPPTPAQLLSPKEPQPKKQSIASRLSEKFQSSLSSDCNKDDDF
QPDRKRIRDAEQECLQSRKRKRLERGVIFIDDEPEQENQPPGPSWATQPHSPLTGLPSSC
SAPEPCSQCPCASAKESGKDKDGKKKIPKIFFGTRTHKQITQIAHELKRTVYSNVPMTIL
SSRDHTCVHPEVAPHSNRNERCKELLEAKNGKSCSYFHGVQRMRDQNTLQLVHGLNEAWD
IEDLVALGKRIRSCSYYAARELRQGASIIFCPYNYLLDPMIRESMEIDLAGQILVLDEAH
NIEDCARESASFTLDLNSLLTCRDELDSMVKSKIRASKHEPLRDFCYTLFNWIQESQGLM
SERGYETASKVWNGKDILAIFDTLGITAATFAILKNNLAAVLEKEERVGFVNGREEMVQI
PIISSATSIVLKNLFMVLDFMFRDNCRFAEDYRVALQRSYSWTNQVQPDAPDAQGFFVRP
RQRQRQGVRVKKEVLTLSFWCLNPAVAFSDLSGPVHSIVLTSGTLSPMGSFSSELGVKFS
IQLEANHVINKSQVWVGTVGAGPQGRKLLATFQHTETYSFQDEVGALLLHVCQVMAKGVL
CFLPSYKMLDKLRDRWINTGLWEKLQQQKTVITEPRGGGKGDFDELLQTYYNAIKYCDER
GQTDGALLIAVCRGKVSEGLDFTDDNARAVVTIGIPFPNIKDLQVELKMKYNDQHKSRGL
LPGNRWYEIQAYRALNQALGRCIRHKNDWGALILVDDRFKNNPNKYITGLSKWVRQLVQH
HDTFSNAMQSLAEFSQVQQKVEAASADSQAVCSTAPPPNCYSPGPVKGQEPLRAALPRTP
HSCVKLPESQQDTSPSTFHPFSCAQPKTEQNEKAEWLKATHSIPAEPLAPKRTAQSLYHI
FNSNPISTCFKRAIFKEKPPSNLSQHLEAPNHSEHKENHEISSPQKNTEVPSCLKQAAAD
ASSEIKAEPLSLAPGPPSGAVPPSCESEADHPAEDESDVDETIFFTPELFEGEDGEVDTK
KETGTESPARVVSGPESSALLSEELFSSEQAQGQGQASAFDGQGAISVSKESTELTQGRA
EETGGQKQGEEGEKEEVDNQSRQVCSRLRRLSRSRHKLPATPTGN
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagtccccagtggagtacaccattggaggggtgaagatccacttcccctgcaag
gcctatccttcccagctggccatgatgaattcaatcgtccgaggactgaactatgggcaa
cactgtttgctggagagtcccacaggaagtggaaaaagcttagccttgctctgctctgct
ctggcctggcagcaggctcagtttgctaaactgcacgaaggtggaaacccagtggacgtt
aagaaccagtccgataaaagccctgacgcctgtaagaagccggatgtcagcacatgctgc
cagtgtgtgtgccacagcaaagctaaactggtgtcggccacagtagacgtcaaacctgct
gtagtggacctcactgtgtcaccacttaaagatcaaagcattgcactgcagctgcccccc
acacctgcacagttgctgtcaccaaaggagccacagcccaagaaacaatccatagcctcc
cgcctgtctgagaagttccagtcttccctgagctctgactgcaacaaagacgatgacttc
cagccagacaggaaacgcattcgggatgctgagcaagagtgtcttcagagccggaagagg
aagcgcctggagaggggagtgatcttcatagatgatgagccggagcaagaaaaccagcct
ccggggccgagttgggccacacagccacacagccccctgaccggtttaccctcatcatgc
agcgccccagaaccctgctcccagtgcccatgtgcttcagccaaagagagtgggaaggac
aaggatggcaaaaagaagattcctaagatcttctttggaactcggacacataaacagata
actcagatcgcccatgagctgaaacgcactgtttactccaatgtgccaatgaccatctta
tccagcagagatcacacctgcgttcacccggaagtggctcctcattccaaccgcaatgaa
cgctgcaaggagctgctggaggccaagaatggtaagtcgtgcagctatttccatggtgtt
cagaggatgcgggaccagaacactctacaacttgtccatgggctaaatgaagcctgggac
attgaggacttggtcgcactggggaaacggatccgctcatgctcttactatgctgcccgt
gaacttagacagggtgcctccatcatcttctgcccatataactacctgctggaccctatg
atcagagagagtatggagatcgacctggcaggccagatcttggtgctggatgaagcccac
aacattgaggactgtgccagggagagtgccagcttcacgttggacctcaacagtctgctg
acgtgcagggatgagctggacagcatggtcaaaagcaaaatcagagcctccaaacatgaa
cccctcagagacttctgctacaccctgttcaactggatccaggagagccaaggcctgatg
agtgaaagaggatatgagactgcaagtaaagtctggaatgggaaggatatactggccatc
tttgacacgctgggtatcactgcagcgacctttgctattctgaagaacaacctggcagca
gtgctggagaaggaggagagggttggtttcgttaatggtagagaggagatggtgcaaatc
ccaatcatcagctcggctacctccattgtcctcaagaacctcttcatggtcctggatttc
atgtttagggacaactgcaggtttgctgaagactaccgggtagccctgcagaggagctac
tcttggaccaatcaggttcaacccgatgctcctgatgcccagggtttttttgttcgacca
cgccagagacaacgccagggtgtccgtgtcaagaaggaagtgttgacactcagcttctgg
tgcctcaacccagctgtggctttctctgacttgagtgggccggtgcacagcattgtgctg
acatcaggaaccctgtcaccgatgggctccttctcctctgaactcggggtgaaattctcc
atccagctggaagccaatcatgttatcaacaagtcccaggtttgggtgggcactgttggt
gcaggacctcaaggcagaaaactcttagccaccttccaacatactgaaacatattcgttc
caggacgaggtgggggccctgctgctccatgtgtgccaggtcatggccaagggtgtgctc
tgctttctgccttcttacaagatgttggacaagctgcgggaccggtggatcaacactggt
ctctgggagaagctacaacaacagaaaactgtgatcactgagccccgcggtggtggcaag
ggggattttgacgaactgcttcagacctactacaatgccattaaatactgtgacgaaaga
ggtcaaactgatggtgcattgctgattgctgtatgtaggggtaaagtgagtgaaggactg
gacttcacagacgacaatgccagggcagtggtcaccattggaattcccttcccaaacatc
aaagacctccaggttgaactgaagatgaagtacaatgaccagcacaagtccagaggtctc
ctcccaggcaatcgctggtacgagattcaggcctacagagctctcaaccaggccctggga
aggtgtattcgccacaagaatgactggggtgccctgattctcgtggatgaccgtttcaag
aataaccctaataaatacatcacaggtctgtctaaatgggtgcgccagcttgtccagcat
catgacaccttcagcaatgcaatgcagtctctggcagaattctctcaggtgcagcagaaa
gtggaggcggcctctgcagacagccaggcagtgtgctctacggccccacctccaaactgt
tactctccaggacctgtaaagggacaggaaccgctgagggccgcactacctcggacacct
cactcatgtgtcaaactgcctgaatcacagcaggacacaagcccctccaccttccatccg
ttttcctgcgcacagccgaaaactgaacaaaatgaaaaagcagaatggttgaaggcgaca
cacagtatcccagcagagccgctcgcaccaaaaagaacagctcagtctctctaccacatt
ttcaactccaaccccatcagcacctgcttcaagagggcaatttttaaagaaaagccaccc
agtaatctcagccagcacctggaggcgcctaatcattctgaacacaaggagaaccacgag
atctcctctccacagaagaacactgaagtgccttcttgtcttaaacaagcggctgcagac
gcttccagtgaaatcaaagcggaaccgctcagtctggctcccggcccgccatcaggagct
gtccctcccagctgtgaaagtgaggcagaccatccagctgaagatgaatcagatgtggat
gagaccatcttctttactccagaactttttgagggtgaagatggcgaagtcgacacaaag
aaggagacggggacagagtcgcctgccagggtggtttcagggccagagagctctgccctg
ctgtcagaagaactttttagctctgagcaggcccaggggcaagggcaagcctctgctttt
gatggacagggcgctatttcagtcagtaaggagagcacagagctgacacagggacgtgca
gaagagaccgggggacagaaacaaggtgaggagggagagaaggaggaggtggacaaccaa
agcaggcaggtatgcagtaggctccgcaggctgtccaggtccagacacaaactccctgcc
actccaacaggtaactaa
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