Hippoglossus stenolepis (Pacific halibut): 118106468
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Entry
118106468 CDS
T08308
Name
(RefSeq) aggrecan core protein
KO
K06792
aggrecan 1
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
hsp00535
]
118106468
00536 Glycosaminoglycan binding proteins [BR:
hsp00536
]
118106468
04091 Lectins [BR:
hsp04091
]
118106468
Proteoglycans [BR:
hsp00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
118106468
Glycosaminoglycan binding proteins [BR:
hsp00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
118106468
Lectins [BR:
hsp04091
]
C-Type lectins
Group 1: Proteoglycan core proteins
118106468
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Xlink
Lectin_C
Sushi
V-set
I-set
ig
Izumo-Ig
Motif
Other DBs
NCBI-GeneID:
118106468
NCBI-ProteinID:
XP_035010934
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All DBs
Position
1:464318..481868
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AA seq
1497 aa
AA seq
DB search
MKLWPVLMCLCLRVVSGTFDHEYEEQGLMDPEDVLSVRVPLEGPQRPLLGGSLVLPCYFQ
DHTVPDPGAPTITPLSHRIKWSLVTKAKVTTILVALEGRVRITHSYLDRVHLLEYPKTPT
DASIQISELRSSDSGVYRCEVQHGIEDDHDIIHLQVQGIVFHYRGITGRYALTFDTATAA
CSQNSAVVASPEQLQAAFDGGFHQCDAGWLSDHTVRYPIHDPRVQCYGDKEELPGVRTYG
ARDLNETYDVYCFSEKMTGRVFHTAAAEKFSFSEAVAACSNQGAQLATTGQLYLAWQGGM
DVCNAGWLRDRSVRYPINIRRPQCGGGLLGVRTVYLHANQTGYPRPEARYDCFCYTESPE
DEGSGLIEEGSGVLGVTTVTQGPEVFFRRTTTESEALGELETQQPTAVDFTESPTELPLP
QPPNVTELITDLIESVTARPGVGREPSQGFVMPPTGVVFHYRSGSGRYRFTFVEAQLACR
SVGASMATAEQLQAAYEAGYHQCDAGWLLDQTVRYPIVFPREKCAGDLGDKPGVRSYGLR
PGDERYDVHCYVDGLKGEVFHVGSAEGFTFDEASSSCREQNAMLASPGELHAAWRMGLDK
CRAGWLVDLSVRYPINNPRAQCGAGESGVRTVYARPNQTHFPEHARFDAYCFRADLLLIA
NETGLNITEIQEALLNLTSITELLRPAVPSIAHPIPVESSGSGSGSADFGSGSAVGSASG
GPSGDLSGSEGISGSGDFSGSGDQVTSGDLSGSGDFSGTGDLSGSGDQVTTGDLSGSGDL
SGSGDQVTSGDLSGSGDFSGTGDISGSGDLSGSGDQVTSGDLSGSGDLSGSGDQVTSGDL
SGSGDFSGDQVVSGDLAGSGSAELPSGVSGLGSADASGSGLSGGESGIAVVFSGFDSFGS
GEGSVSGGFQEAGEGSTGILMFPSSEVGSGVLSGSGDLSGSGAGFGFSSGESEQFSGMPS
GFITSQDFSGSSSFPSGVSSGSGHSGELSGSGDAHISLIDGELIDVSTPITHKEHELGGD
LLVFSGSGDISGSGILSGDHSGSSSGSDSGFFSGVTLVGSGFTELSVSSSGEQEASGSLL
YSSGQGSGEHLSGFGSSSFISGFTSGMPGSGMSGSGMSGSGWSGSKSSTSGEGSVTFVSG
DFLTEVSGDALSLELGQGSAVYSGEGSRSSSGDDTSTVSSISSGVSSGLSSGLSSGDLPQ
ALLPSTSGWGLTESTTGPEEAEVSQTHDEVHVTHGPALAPAGLAAPPTAETQGIVGKTAT
VEGDLNPCDPNPCGDAGCWVEGGAALCRNEQQCEDGWTKFQGNCYLHLPDRETWLDAEHR
CRDLNAHLVSIITPEEQGFVNSNAQDYQWIGLNDKTVEKDFRWTDGSPLQFENWRPNQPD
NYFHSGEDCVVMIWHESGQWNDVPCNYHLPFTCKKGPVSCGAPPEVDNAHMFGNRKEEYP
VNSIIRYQCDAGFTQRHPPVVHCKADGQWEEPQVECTDVKARRRTQRRSRSPAAKLH
NT seq
4494 nt
NT seq
+upstream
nt +downstream
nt
atgaaactgtggccagttttaatgtgtttgtgtctgagagtcgtctcaggaacatttgac
cacgagtacgaggagcaaggcctcatggacccggaggacgttctcagtgtgcgtgtccct
ctggagggaccacagcgccctctactgggaggatcactggtgctaccgtgttactttcag
gaccacacagttccagacccaggagctcccaccatcacgccgctctcccatcgcatcaag
tggagcttggtcactaaagcaaaggtcacgaccatcctggtggcgttggagggacgggtg
cgtatcacacacagttacctggacagagttcatctgctggaatatcccaaaacaccaact
gacgccagcatccagatctctgagctgcggtccagtgactcaggagtgtatcgctgtgag
gttcagcacggcatcgaggacgaccacgacatcatccacctgcaggttcaaggcatcgtg
ttccactaccgaggcatcacggggcgctacgctctgacgtttgacacagcgacggcggcg
tgctcacagaacagtgccgtggtggcttcacctgaacagctccaagctgcgttcgatggc
ggtttccaccagtgtgacgccggctggctctctgatcacacagtcaggtacccgatccac
gaccctcgtgtgcagtgctacggggacaaggaggagctgccgggggtccggacgtacgga
gcgagggacctgaacgagacctatgacgtgtactgtttctcagagaagatgacaggcaga
gttttccacacggccgcagcagagaagttcagcttctctgaggctgtggcggcctgctcc
aatcagggagctcagctggccaccacaggtcagctctacctggcctggcagggggggatg
gacgtgtgtaacgccggctggctgcgggaccggagcgttcgataccccatcaacatccgg
cggccgcagtgtggaggaggtctgctgggagtgagaactgtttacctgcacgctaaccag
acaggatacccacgtcctgaagctcgctacgactgcttctgctacaccgagtctcctgag
gacgaaggctcaggcctcatagaggagggcagtggcgttctgggcgttaccacggtgacg
cagggccctgaggtgttcttcaggaggacgaccacggagagcgaagcactgggagagctg
gagactcagcaacccaccgctgtggatttcacagaaagtcccacagagctgccgctgcct
cagccgcccaacgtcaccgagctcatcactgacctgatagagtccgtcaccgcccggccc
ggcgtcggcagagagcccagccaaggctttgtgatgcctcctactggcgtggtcttccat
taccgctccggctccggtcgctatcggttcaccttcgttgaggctcagctggcctgtcgg
agcgtcggagcctccatggccacagcagagcagctgcaggcagcatatgaggccggatat
caccagtgtgatgcaggatggttactggaccagactgtaaggtatcccattgttttccct
cgagaaaagtgcgctggagatctgggggataaacccggagtgcggtcgtacggtctgagg
cctggagatgagagatatgatgttcactgctacgttgatgggctcaaaggtgaggtgttc
catgtgggatctgctgagggcttcaccttcgatgaggcttcttccagctgtcgagagcag
aacgccatgttggcctcccccggagagctccacgcagcctggagaatgggtttggacaag
tgccgtgctggctggctggtggatctgagcgtccgctatcccatcaacaaccctcgagcc
cagtgtggagcaggggaatctggagtgcgcaccgtgtacgctcgccccaaccagacacac
ttccctgaacacgccagatttgatgcatactgtttcagagctgatcttctactgattgca
aatgaaactggactgaacatcacagaaatccaggaggcgcttctgaacctgacgtccatc
actgagttgttgaggcctgctgttccctctatcgctcatccaatccctgtggagtcatca
ggctctggttcgggttccgcagactttggttcagggtctgcagtcggtagtgcctctggg
ggtccctcaggagatctctctggttctgaaggcatctctggttctggagacttttctggt
tctggagaccaggttacctctggagatctctctggttcaggagacttttctggtactgga
gacctctctggttctggagaccaggttaccacaggagatctctctggttctggagacctc
tctggttctggagaccaggttacctctggagatctctctggttcaggagacttttctggt
actggagacatctctggttctggagacctctctggttctggagaccaggttacctcagga
gatctctctggttctggagacctctctggttctggagaccaggttacctctggagatctc
tctggttcaggagacttttctggagaccaggttgtctctggagatctggctggtagcggg
agtgcagagctgcccagtggagtgtctggtcttggtagtgcggatgcttctggatcaggt
cttagtggaggagaatctgggatcgctgtggttttctcaggctttgacagttttggctct
ggagagggctcagtttcaggaggattccaagaagctggagaggggagcacaggaattctg
atgttcccttcatctgaagtgggctctggagtgctcagtggcagcggggacctgtctgga
tctggtgctggattcgggttcagctctggggaaagtgaacaattctctggcatgccatcc
ggtttcatcaccagtcaggacttttctgggtccagcagtttcccatcaggagtttcctct
ggaagtggacactcaggagagctttcaggaagtggagacgctcacatctcactgattgat
ggtgaattgattgatgtgtccactccgattactcacaaggagcatgaacttggtggggac
ctgctggtgttcagtggatctggagacatttcaggttctgggattctcagtggcgatcac
agcggctcttcttcaggaagtgactcagggttcttctcaggcgtgaccttggtggggtca
gggttcactgagctttcagtgtcatcctctggagagcaggaggcctctgggtctttactc
tacagctctggacagggaagtggtgaacacttgtctgggtttggtagctcaagtttcatc
tctgggttcacttcaggaatgcctggatcaggaatgtctggatcaggaatgtctggatca
ggatggtctggatcgaagtcctctaccagcggagaaggcagtgtcacatttgtgtctgga
gatttcctgacagaagtatctggagatgctctgtctctggagctgggacaggggtctgca
gtgtacagtggagaaggaagcaggagcagcagcggcgacgacacgtccacagtcagcagc
atttcttcaggagtttcttctggactttcttctggactttcctctggagatcttccacag
gcgctgctgccctctacctcgggatgggggttaacagagagcacaacaggaccagaggag
gctgaagtatcacagactcacgatgaagttcacgtgacccatggtcctgcactcgccccc
gcaggactggctgctcctcccaccgcagagacacaaggcattgtgggaaaaacagccaca
gtggaaggtgacttgaacccgtgtgatccgaacccctgtggtgacgctgggtgttgggtc
gagggcggagctgctctctgccgcaatgagcagcagtgtgaagacgggtggactaagttt
caggggaactgttacctgcacctccctgacagagagacgtggctggacgcagagcatcgc
tgccgggacctgaacgcccacctggtcagcatcatcacgccagaggagcagggctttgtc
aactcaaacgctcaggactatcagtggatcggcctgaatgacaagacggtggaaaaggac
ttccgctggacagacggttctccactgcaatttgagaactggaggccgaaccagccggat
aattacttccactccggagaagactgtgtggtgatgatctggcacgagagcggccagtgg
aacgacgtgccctgcaactaccacctgccgttcacctgcaagaagggtccagtgtcttgt
ggcgccccgccggaggtggacaacgcccacatgtttggtaacaggaaggaggagtatcct
gtcaactccatcatccggtatcaatgcgacgcaggatttacacagcgccacccaccggtg
gtccactgtaaagcagacggacagtgggaggagcctcaggtggaatgtactgacgtgaaa
gccagaagaagaacccagcggaggagcaggagtccggcagccaaactccactga
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integrated database retrieval system
