Hippoglossus stenolepis (Pacific halibut): 118106587
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Entry
118106587 CDS
T08308
Symbol
dscamb
Name
(RefSeq) Down syndrome cell adhesion molecule homolog isoform X1
KO
K06767
Down syndrome cell adhesion molecule
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
hsp04515
]
118106587 (dscamb)
Cell adhesion molecules [BR:
hsp04515
]
Immunoglobulin superfamily
DSCAM family
118106587 (dscamb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
Ig_2
fn3
ig
Ig_DSCAM-DSCAML_C
V-set
C2-set_2
Pur_ac_phosph_N
C1-set
V-set_CD47
fn3_2
C2-set_3
DUF4446
ARM_TT21_4th
EphA2_TM
Motif
Other DBs
NCBI-GeneID:
118106587
NCBI-ProteinID:
XP_035011151
LinkDB
All DBs
Position
4:complement(13518932..13638836)
Genome browser
AA seq
2089 aa
AA seq
DB search
MWILAFIFSQSILNVFSEDLHSSLYFVNASLQEVVFASTTGTAVPCPAGGALPASLRWYL
ATGEEIYDVPGIRHVHPNGTLQIFNFLPSSFSKLIHDNTYYCTAENPSGKIRSQDVHIKA
VSREPYTVRVADQKAMRGSVAVFKCIIPASVEAYVTVVSWEKDTVSLNSGQRYLIPSTGA
LYILDVLPEDGLNNYRCTTRHRYTGETRQSNSARLIVSDPTNAEPGILDGFDHREVMINH
RVELPCKASGYPTPKYRWLKDNSPLEPDSRFRQTITGLLIESTQPSDSGTYVCEVWNSYG
NAEVMGRLYIKQPLKAVVSPRKVKGSVGSKVSLSCSVSGSDEYELSWYRNGEIIYPGNSV
RFSGLNRENLIMEGMSKSDGGAYQCFARKGKMSAQDFVQVILEDGTPKILSSFSEKVVNP
NEPVFLVCNVKGTPPPRCSWSLDEDPVIKDSHHHLGHYETHEGHVVSQLNVTHTQVQDGG
VYRCTCSNSAGGVYHQARINVRGRASIRPMKNITAVAGRDAFIHCRVIGYPYYSIKWYKN
SALLPFNHRQRAFENNGTLKLTNVQQVDAGEYNCKVMVQPNKMDSQSVHLRVRVPPYIQP
FEFQRFTIGQRVFIPCVVMSGDRPLDITWQKDGRPIPISLGVTVDNIDFTSSLRISNLTP
DHNGNYTCVARNEAAAVEHQSQLIVRVPPQFVVQPEDQDGIYGKTVTLNCSAEGYPPPTI
VWEHSKGAGVPQFQPILLNSGSRIQLLSNGSLLIKHVLEDDNGFYLCKVSNDVGADVSKS
MYLTVKIPAMITSYPNTTLATHGEEKKMSCIAHGEKPIMVRWEKEERIINPETSRYVVTV
KEVADEVISTLVIMPTVREDSGFFSCHAINSFGEDRGIIQLTVQEPPDPPEVEIREVKDR
TIALRWTMGFDGNSPITGYDIECKNKSASWLSAQVTKDVSPQLNQATIIDLHPSSTYNIR
MVAKNIIGNSNPSNELTITTDEAAPDGPPQDVILESTSPQSIKVSWKPPHKHLQNGVIRG
FQVGYREYSPGGSHQFTIISLDTTGDTTESILLDNLKKFTQYSVVVQAANRAGTGPSSQQ
VVTKTLEDVPSRPPENVLAVAKSPEVISLSWIPLPREALNGNLQGYRVIYWANLPDGELG
EIRNVTTNQPSLELDGLEKYTNYSIQVLAFTNAGDGVRSEQIYVRTKEDVPGPPAGVKAA
ASSSSVVFVSWLPPLKLNGIIRKYIVFCSNLHPMVMSEFEASPDAYFYRIPNLARNRQYS
IWVVAVTAAGHGNNSEKITVEPLAKAPSRILTFNGTVTTPWMKDIVLPCKAVGDPPPTIK
WLKGNTNGTPTPVLVDGRRSVHGNGSFLIRTVKAEDSGNYSCVASNNWGSDEITLNLQVQ
VPPDQPRLTVTKTTTTSITLSWIPGDNGGSSIRGYILQYSEDNSEQWGSFPISPSERSYR
LENLKCGTWYKFTLTAQNAVGPGRISEIIEAKTHGKEPQFAKEHELFTSINSTRARLNLV
GWNNGGCPITSFILEYRAVDSSTWTTAQRTSLTKSYILYDLQEATWYELQMKVTNSAGSS
EKRNIFATLNADGSTIPPLLKTGDPISDNMSGSGGLKMVVTITSILVVVVLVFIMLMVLK
RRRREQRLKRLRDAKSLAEMLMSKNTRTPDTVNKQQQTLRMHIDIPRAQLLIEERDTMET
IDDRSTVLLTDNDFGETNKQKSSTVTHTVHYQSLSQATGPLVDVSDARPGTSESHHHPTA
RRTAKAGPAAARSRYASQWTLNRPHPTSSSHTLTTDWRLPTPRATGSVDKESDSYSVSPS
QDTDRARSSMVSTESASSTYEELARAYEHAKMEEQLRHAKFTITECFISDTSSEQMTAGT
NDYTDSLTSSTPSESGICRFTASPPKPQDVSRVMNMAAPKAHRPGGELVHLPPYLRMDFL
LNRGVPLAARGGGVSSSSGSSSSGGGAGGGGGGGGGGGGGAGASGGGVGASGDARVGAGG
AGGAMGQTCLEPQRSRTLKRPPPMEPTPMEVPSPREVQQWQPGTASTLPHRDVRERGEAR
GEVRADVPSSGDLAQAQAAKLSTSQESLLDSRGHLKQSNNPYAKSYTLV
NT seq
6270 nt
NT seq
+upstream
nt +downstream
nt
atgtggatattggcttttatcttttcgcagagcatcttgaatgttttcagtgaggaccta
cattccagcttatactttgtcaatgcatctctgcaagaggtagtatttgccagcactaca
gggaccgcagtgccctgtcctgctggtggggccctgcctgcctcgctgcgctggtatctg
gcgaccggcgaggagatctacgatgtcccgggcatccgccacgtgcaccctaacggaacc
ctccagatcttcaacttcctgccgtccagtttcagcaagctgatccacgacaacacatac
tactgcactgccgagaacccttctggcaagatcaggagtcaggatgtccacatcaaagct
gtatcacgggaaccctacacggtcagagtggctgaccagaaggctatgagaggcagtgta
gccgtcttcaagtgcattatccctgcttctgtcgaggcctacgtcactgttgtatcatgg
gagaaagacacagtttcactcaactcaggacaaagatatctcatcccatccacgggagcc
ttgtacattctggacgtcctgcctgaggatgggctgaataactaccgctgcaccacacgc
caccgctacaccggcgagactcgtcagagcaacagtgcacgtctcattgtgtcagacccc
accaatgctgagccaggcatcttggatggctttgaccacagagaggtgatgattaatcat
cgggtggagctgccctgtaaggcctcgggctacccaacgcccaagtaccgctggctgaag
gacaacagccctctggagcctgacagccgcttccgccagaccatcacagggctgctgatc
gagagcacgcagcccagtgattctgggacgtatgtgtgtgaagtgtggaacagctatggc
aatgctgaagtcatggggcgcctgtatataaagcagcctctgaaggccgtggtcagccct
cgcaaggtgaaaggcagcgtgggtagcaaggtgtctctgtcctgtagcgtgagcggctca
gatgagtacgagctgtcatggtaccgcaacggagagatcatctacccgggcaacagcgtt
cgtttctcggggctcaacagggagaacctcatcatggagggcatgtcgaagagtgacggt
ggagcttaccagtgcttcgctaggaagggcaagatgtccgcccaggactttgtgcaagtc
atcctagaagatggcactcccaagatcctgtcctccttcagcgagaaggtggtgaacccg
aacgagcccgtcttcctggtctgcaacgtgaagggcacaccgcctcccagatgcagctgg
tccctggacgaagaccccgtcatcaaagacagccaccaccacctgggccactacgagacc
cacgagggccacgtggtcagccagctcaatgtgacccacacccaggtgcaggacggaggg
gtgtaccggtgcacgtgcagcaactcggccgggggcgtgtaccaccaggctcgaataaac
gtaagaggccgcgccagcattcgtccaatgaaaaacatcacagcggttgccgggcgggac
gcctttatccattgccgtgtgattggctacccttactactccataaagtggtacaaaaat
tccgcactgctccccttcaaccaccggcagcgagccttcgagaataatggcacactgaag
ctgaccaacgtgcagcaggtggacgctggcgagtataactgcaaggtgatggtccaaccc
aacaagatggactctcagagtgtccacctccgcgtacgagtcccgccgtacattcagcca
tttgagttccagcgttttaccattggacagcgtgtcttcatcccctgcgtggtcatgtca
ggcgaccggccactggacatcacttggcagaaagatggacggccgatccccatcagccta
ggtgtgactgtggacaacatcgacttcaccagctcactgcgaatctccaacttgacgccc
gaccacaacggaaactacacttgcgttgcccgcaacgaggctgctgcagtggaacaccag
agtcagctcattgtcagagttcctcctcagtttgtggttcagcctgaggatcaagatggg
atctatgggaaaactgtgactctcaactgctccgctgaaggttacccaccacccaccatc
gtatgggagcactccaaaggtgcgggtgtcccccagtttcagcccatcctcctaaacagt
ggctctcgtatccagctgctgagcaacggttcgctgctgatcaaacacgtgctggaggac
gacaacggcttctacctgtgtaaggtcagcaacgacgtgggagctgatgtcagcaagtcc
atgtacctcaccgtcaaaatcccggccatgatcacctcctaccccaacaccaccctggcc
acgcatggcgaggagaagaagatgagctgcatcgctcacggagagaagcccattatggtg
cgctgggagaaagaggaacgcatcatcaaccccgagaccagccgatacgtggtcaccgtc
aaagaagtggctgacgaagtcatttccacgctggtgattatgcctacagttcgtgaggac
tccggcttcttctcctgtcatgccatcaactcgttcggcgaggaccggggcatcatacag
ctgacggtgcaagagccgcccgaccctccggaggtggagatccgggaggttaaggatcga
accatagctctgcgctggacgatgggttttgacgggaacagccccatcacaggatatgat
attgagtgcaagaacaaatcagcttcttggctttcagcccaggtaaccaaagatgtgtca
ccgcagctcaaccaggccactatcatcgacctgcacccttcctccacttacaacatccgc
atggtcgccaagaacataatcggcaacagcaaccctagcaacgagctcaccataactact
gatgaagcagctcctgacggtccaccacaagatgtcatactggagtccacgtccccgcag
agcatcaaagtctcctggaagcctccacataaacacctgcagaacggcgtgatccgcggt
ttccaggtgggctacagggagtacagcccaggcggcagccaccagttcaccatcatcagc
ctggacacgacaggagacaccacggagagcatcctgctggacaacctgaagaagttcact
cagtacagtgtggtggtgcaggctgcaaacagggcaggcaccgggccgtcgtcacagcag
gtggtcaccaaaactctggaggatgtgccttctcggcctcctgaaaatgtcctggcagtg
gccaagtctccagaagtcatctcactgtcctggattccgctgcccagagaggctctcaac
ggaaacctgcagggctacagagtcatctactgggccaacctgcccgatggagagctggga
gagatcaggaatgtgacgaccaatcagccatctctggagctggacggcttggagaagtac
accaactacagcatccaggtgttagccttcaccaacgctggagatggtgtccgcagcgaa
cagatctacgtgcgcacaaaagaggacgtgcccggtcctccagcaggggtgaaggctgcc
gcctccagcagctcggtggtgtttgtctcctggctgcctccactcaaactcaacggtatc
atcaggaaatacatcgtcttctgctcgaacctgcatcccatggtgatgagtgagttcgag
gcgtctccagatgcgtatttctacaggatcccaaacttggctcggaaccgacagtacagt
atctgggtggtggctgtgactgctgccggtcatggcaacaacagtgagaagatcacagtg
gagcctctggccaaagctccctccaggattctgaccttcaatgggacagtgacgactccc
tggatgaaagatatcgttctgccatgcaaggctgtcggagaccctccccctaccatcaag
tggctgaagggaaacaccaatgggactcctacccctgtcctggtggacggccgtcgcagt
gtccatggcaacggcagcttcctcatccgcacagtgaaagcagaggattctggcaactac
agctgtgtggccagcaacaactgggggtcagatgagatcacacttaatctacaggtccaa
gtccctcctgaccagcctcgcctcactgttaccaagacgaccaccacatcaatcacattg
tcatggatacctggagacaacggagggagttcaatcagaggctacatcctgcagtattca
gaagacaacagcgagcagtggggcagttttcccatcagtcccagcgagcgttcgtaccgt
ctggaaaacctcaagtgtggcacctggtacaaattcaccctgacggcccagaatgcagtg
ggaccagggcgcatcagtgagatcatcgaagcgaagacccatgggaaagaaccccagttt
gccaaagaacatgaactcttcaccagcatcaactccaccagggccaggctcaacctggtc
ggctggaacaacggcggctgtccgatcacctccttcatactggagtaccgagcggtggac
tcgtccacctggaccacggcccagcgcacatcactgaccaagagctacatcctgtacgac
ttgcaggaggcgacctggtacgagctgcagatgaaggtcacaaacagcgccggctcatca
gagaagaggaacatctttgctactctcaatgctgacggaagtaccatccctcccttgctg
aagacaggagatcccatctcagacaacatgtcaggcagcggaggtctgaagatggtggtg
accatcacctctattctggtggtggtcgtgctggtcttcatcatgctcatggtgctaaag
aggaggcgaagggagcagaggctcaagagactcagagatgccaagagcctggcagaaatg
ctgatgagtaaaaacacgcggacgccagacacagtgaacaagcagcagcagacgttaaga
atgcacatcgacatccccagagcccagctcctgatcgaggagagggacaccatggagaca
atcgatgacaggtccaccgtgctgttgacagacaatgacttcggggagacgaataagcag
aaatcctccacggtgacccacacggtccactaccagtctctgtcccaggccaccgggcca
ctggtggacgtgtccgatgccaggcctggaaccagtgagtcccaccaccatcccactgcc
agacgcactgccaaagccggtcctgccgcagcacggagccgctatgccagccagtggacc
ctcaaccggccacaccccaccagctcctcgcacaccctgaccactgactggagactcccc
acgccacgggccactggctctgtggataaggagagcgacagctacagtgtcagcccctca
caggacaccgatcgtgcacggagcagcatggtatcaacagagagcgcatcctccacctat
gaggagctggccagagcctatgagcacgcaaagatggaggagcagctccgccacgccaag
ttcaccattaccgagtgcttcatctctgacacctcatcagagcagatgacagcagggacc
aacgactacaccgacagcctgacttccagcacgccgtccgagtcgggcatctgccgcttt
accgcttcgccgcccaaacctcaggatgtcagccgggtcatgaacatggccgcgcccaag
gcacacagacctgggggagagctggtccacttgccgccttatctccgcatggacttcctg
ttgaaccgtggcgtgccactggcagcccgaggtggaggagtgagcagcagcagtggcagc
agcagcagtggaggaggagcaggaggtggaggaggtggtggtggtggaggaggaggagga
gcgggagcaagcggaggtggtgttggtgcttcaggggacgcaagagtcggggcaggagga
gcaggaggagcaatgggccagacctgcctggagccccagaggagccgcaccctgaagagg
ccacctcccatggaacccacccccatggaagtgccctcgcccagggaggtgcagcagtgg
caaccaggaactgcctccaccctcccccacagggatgtccgggagaggggagaggcccgg
ggcgaggtccgggcggacgtcccctcctcaggagaccttgcccaagcacaggctgccaag
ctcagcacctcccaggagtcactgctggactccagaggacacctgaaacagagcaacaac
ccctatgccaagtcttacactctggtataa
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integrated database retrieval system
