Hippoglossus stenolepis (Pacific halibut): 118106701
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Entry
118106701 CDS
T08308
Symbol
ercc2
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03022
Basal transcription factors
hsp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
118106701 (ercc2)
09124 Replication and repair
03420 Nucleotide excision repair
118106701 (ercc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsp03021
]
118106701 (ercc2)
03036 Chromosome and associated proteins [BR:
hsp03036
]
118106701 (ercc2)
03400 DNA repair and recombination proteins [BR:
hsp03400
]
118106701 (ercc2)
Enzymes [BR:
hsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
118106701 (ercc2)
Transcription machinery [BR:
hsp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
118106701 (ercc2)
Chromosome and associated proteins [BR:
hsp03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
118106701 (ercc2)
DNA repair and recombination proteins [BR:
hsp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
118106701 (ercc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
ResIII
DEAD
SesA
Motif
Other DBs
NCBI-GeneID:
118106701
NCBI-ProteinID:
XP_035011326
LinkDB
All DBs
Position
4:2545707..2553767
Genome browser
AA seq
760 aa
AA seq
DB search
MKLNIEGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQ
RAFPLEVTKLIYCSRTVPEIEKVVEELRKLIEYYCKETGERNNFLALALSSRKNLCIHPE
VSALRFGKEVDGKCHSLTASYIRAQRHSDPGLPACRFYEEFDAVGRQVPLPPGVYNLDDL
KDFGRRKGWCPYYLARYSILHANIVVYSYHYLLDPKIADLVSKELSKKSIVVFDEAHNID
NVCIDAMSVNITRRTLDRCQTNVDTLQTTIQKIKETDTAKLREEYMRLVEGLKNANVARE
TDVYLSNPVLPDEILKEAVPGSIRTAEHFVGFLRRFLEYLKSRLRVQHVVQESAPQFLKD
IFDKVCIDRKPLRFCAERLQSLLRTLEIADIADFSAVTLISNFATLVSTYSQGFTIIIEP
FEDRTPTIANPVLHFSCMDPSIAIKPVFQRFQSVIITSGTLSPLDIYPRILDFRPVTVAS
FTMTLARTCLCPLIVGRGNDQVALSSKFETREDFAVIRNYGNLLLEMSAIVPDGIVAFFT
SYIYMENIVASWYEQGILENIQRNKLIFIETQDAAETSMALEKYQEACENGRGAILLSVA
RGKVSEGIDFVHHFGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA
AQCVGRAIRGKTDYGLMIFADKRYARADKRGKLPRWIQEHISDGSLNLTVDEAVHLSKHF
LRQMAQPFRQEDQLGLSLLTFEQLQSEEMLKKISQIAHQT
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcaacatcgagggtctgctggtgtattttccgtacgactacatttaccctgag
cagtactcctacatgctggagctgaagaggactctggacgctaagggtcatggagtcttg
gagatgccgtcaggaacagggaagacgatctctctgctgtcactcatcgtcgcctatcaa
agagcctttcctctggaagtgaccaaattaatttactgctccagaacagttccagagatc
gagaaggtggtggaggagctgaggaaactgatcgagtattattgcaaggaaactggagaa
agaaacaacttcctggctctggctctttcctccaggaagaacctctgcatccaccctgag
gtgagcgctctgcgcttcggtaaggaagtggacgggaagtgtcacagtctgacggcgtcg
tacatccgtgcacaacgccacagcgaccccggcctgcccgcctgtcgtttctatgaggag
ttcgatgccgtcggccgacaggtgcctcttccacctggcgtctacaacctggacgacctg
aaggactttggcaggaggaaaggctggtgtccgtattatctggcgcgctactcaatcctg
cacgccaacatcgtagtgtacagctaccactatctgctggacccgaagatcgccgacctg
gtgtccaaggaactctccaagaaatctattgtggtgtttgatgaggctcataatattgac
aacgtatgtatcgacgccatgagtgtgaacatcaccagacgcacactcgaccgctgccag
accaacgtggacacgctgcagaccaccatacagaagatcaaggagacggacacggccaag
ctgagggaggagtacatgcgactggtggaggggctgaagaatgccaacgttgcccgggaa
acggacgtctacctctcaaatccagtgttaccagatgaaattcttaaagaggcagttcct
ggatctattcgcacagccgagcactttgtgggtttcttgaggcgtttccttgaatatctg
aagtcccgtctgagggtccagcacgtggtccaggagagcgccccccagttcctcaaagac
atcttcgacaaagtctgcatcgaccggaaacctctgaggttctgtgcagagcggctgcag
tcgttattacgaactctggagatcgcagacatcgccgacttctcagctgtcactctcatc
tctaactttgctaccctggtcagcacctacagccaaggttttaccatcatcattgagcct
tttgaggacagaactccgaccatcgcaaaccctgttctgcacttcagttgcatggatccg
tctatagccatcaaacctgtttttcaaaggtttcagtcggtcatcatcacctcggggact
ctctctccactggacatctatccccgaatcctggacttccgcccagttaccgtggcgtcc
ttcaccatgacgctagcacggacctgcctctgtcccctgatcgttggaagaggaaatgac
caagtggccctgagctccaagttcgagaccagagaagactttgctgtgattcgtaactat
ggcaacctgcttcttgagatgtcggccattgtccctgacggcattgtggcgtttttcaca
agctatatttatatggagaatattgtggcatcttggtatgaacagggaatccttgaaaac
atccagagaaacaaactcatcttcatcgagactcaggatgctgcagagaccagcatggcc
ctggagaaataccaggaggcttgtgagaacggcagaggagccatcctcctgtcggtggcc
agaggaaaagtgtctgagggaatcgactttgttcaccactttggtcgggcagtcatcatg
tttggagttccttatgtttacacacagagccgcatcctaaaggctcgtctggaatacctt
cgggatcagtttcagatcagagagaacgacttcctcacgtttgatgccatgcgtcacgca
gctcaatgtgtgggcagagccatcagaggcaagaccgactacggactcatgattttcgct
gacaaacgctacgcccgagcagacaaacgggggaaactccctcgctggattcaggagcac
attagcgacggcagtctgaacctcacggtggacgaggccgtccatctctcaaagcacttc
ctccggcagatggctcagcctttcagacaggaggaccagctgggtctgtctctgttgact
ttcgagcagctgcagtctgaggagatgctgaagaaaataagtcagatcgctcatcagact
taa
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