Hippoglossus stenolepis (Pacific halibut): 118108684
Help
Entry
118108684 CDS
T08308
Symbol
pcdh17
Name
(RefSeq) protocadherin-17 isoform X1
KO
K16499
protocadherin delta 2
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
hsp04515
]
118108684 (pcdh17)
Cell adhesion molecules [BR:
hsp04515
]
Cadherins
Protocadherins
118108684 (pcdh17)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
PepSY
Cadherin_C_2
Motif
Other DBs
NCBI-GeneID:
118108684
NCBI-ProteinID:
XP_035011641
LinkDB
All DBs
Position
1:complement(10119867..10176829)
Genome browser
AA seq
1141 aa
AA seq
DB search
MYLSIFFFLLLWAQALTLKNLNYSVPEEQGPGTVIGNIAKDARLGLDQTGPGGQGKKANF
RVLENSAPHLIDVDPQSGLLYTKQRIDRETLCKRNPKCQLSMEVFANDKEICMIKIDIQD
INDNSPNFPSDQIDIDISENAVPGTRFPLTSAHDPDAGENGLKTYQITRDDYNLFSLEVK
ARGDGTKFPELVIQRPLDREERSHHTLILSATDGGEYPRSGTMQINVKVIDSNDNSPVFD
QPTYVVEIPENSPPGKVLIDLNATDPDEGNNGQVVYSFSGYAPERIRELFSIDSRTGVIK
IQGEIDYEESPVIEIDIQAKDLGPNPIPGHCKVTVKVLDRNDNWPSIGFVSVRQGAISEA
APPATVIALVRVTDKDSGRNGQLQCRVLGNVPFKLEENYDNFYTVVTDRPLDREVQDEYN
VTIVAKDNGLPPLNSTRSFTVKILDENDNVPRFTKSVYLLQIPENNIPGEYLGSVLAHDP
DLGQNGTVYYSILNSNVSGGDVNTYVNVNAANGAIYAVRSFNYEQIKYFDFKVLARDAGS
PHLESNATVRISVLDVNDNIPVIVLPLLLNDTAEIHVPRNVGVGYIVTTVRAVDNDYGES
GRLTYEISDGNEEHLFEIDPVTGEVRTAHPFWDDVSPIVELIIRVSDHGKPTLTAAARLI
VKASNGRPPDGLPRTKDNQNWDMSLPLIVTLSIVSIMLLAAMVTIAIKCKRENKEIRTYN
CRIAEYSHPQLGKGKKKKINKNDIMLVQSEVEERDAMNVMNVVSSPSLATSPMYFDYQTR
LPLSSPRSEVMYLKPTANNLSVPQGHVGCHTSFTGPVTSTTDTPTNRMSIIQTDNFPTEP
NYMGSRQQFVQSSSTFKDPERASLRDSGHGDSDQADSDQDTNKGSCCDMSAKEALKLKAT
GVKPPPLEQDEDCVNCTEECRVLGHSDRCWMPQFPTGGNQAEGIDYRNNMFVPAGMETVP
ETETYETVNPNGKKTFCTFGKERRDHTILVANVKPYLKAKRALSPLLQEVPSASNSPTKG
CSTNSPCSSIKSPADGAEGKPPPASCSGHYGPPDGQYLSPTKQTRDQGVYPPLPPSDPVA
KVLAEARSRISQEAAGEMECPMEQMEPDVNRDGMDADQVVRDIDKLLQDCRGSEATGTLR
K
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgtatctttctattttctttttcctcctgttatgggctcaagccctgacattgaaaaac
ttgaattactctgtcccagaggaacagggtccggggacagtgattgggaacattgccaaa
gatgccagactcggactcgatcagactggaccgggaggacagggtaaaaaagccaacttt
cgggtgctggagaattcagccccgcatctcattgacgtggaccctcaaagtggactgctg
tacacaaagcagcgcatcgacagggaaacattgtgtaagagaaaccccaagtgccagcta
tcaatggaggtttttgccaatgacaaagagatctgcatgatcaaaatagatattcaggac
attaatgacaactcacccaatttcccctccgatcagattgatattgacatttcagaaaat
gctgtgccagggacacgctttcccctgaccagcgcgcatgatccagatgcaggagaaaat
ggcctgaaaacctatcaaataacccgtgatgactacaatctcttttccttggaggtaaaa
gcccgcggggatgggacaaaattcccagaattagttattcaacgacccttggacagagaa
gaacgaagccatcacaccctaattttgtcagccaccgatgggggggaatatcctagatca
ggtaccatgcagataaatgttaaagtaattgattcaaatgataacagccccgtgtttgat
cagcccacatatgtcgtggaaattcctgaaaattcacctcctggtaaagtcctaatcgat
ttaaatgccacggatcctgatgagggcaacaacggacaagtagtctattcttttagtggc
tatgccccagagagaatccgggagctcttctccatagattccagaacaggggtcataaag
attcagggtgaaattgactacgaagagagcccagttatcgagattgacattcaggctaag
gatctcggtcccaatccaatcccgggccattgtaaagtcactgttaaagtgctggacagg
aatgataactggccatctataggctttgtgtctgtgagacagggagccatcagcgaggca
gcacctccagccactgtcattgctctggtccgtgtcacagacaaggactcgggcaggaat
gggcagcttcaatgcagagtgctgggtaatgtcccttttaaactcgaggagaactatgat
aacttctatacagtggtgacagacaggcccttggacagagaggtgcaggatgagtacaat
gtcaccattgttgccaaagacaatggcctccctcctttaaactctacaagatccttcact
gtgaagattctggatgagaatgacaatgtccctcgcttcaccaagtcagtgtaccttctt
cagattcctgagaacaacatccctggggagtacctgggctcagttctggcacacgaccca
gaccttggccagaatggcaccgtgtactacagcatactcaactccaatgtgagtgggggt
gatgtcaacacgtatgttaatgtaaatgctgcaaatggagccatctatgctgtgagatct
tttaactacgagcagatcaagtattttgactttaaggttcttgctagagatgcaggatct
ccgcatctggagagtaacgcaacggtgcgcatcagcgttctggatgtcaatgacaacatc
cctgtcatagtcctgccgttactcctgaacgacacagctgaaatccacgtgccacgtaat
gttggtgttggctacatagtcaccacagtgagggcagtggataatgactatggcgagagc
gggaggctcacctatgagatctcagatggcaacgaggagcacctctttgagatcgatcca
gtgactggggaggtgcgaacagcccatccattttgggatgatgtcagccccattgtggag
ctgatcatccgagtatcagaccacggcaagccaactctcactgctgccgccagactcatc
gtcaaggcttccaacggacgtcctcctgatggactgcctcgcacaaaggacaatcagaac
tgggacatgtctctgcctcttatagtaactctaagtattgtatccatcatgcttctggct
gccatggtgaccatagctatcaagtgcaagcgggaaaacaaggagatccgtacctataat
tgtcgcattgcagaatactcgcaccctcaactcggaaaaggcaagaagaagaagataaac
aagaacgacatcatgctggtgcagagcgaggtggaagagcgggatgccatgaatgtgatg
aatgtggtaagcagcccttccttggccacctcacccatgtactttgactaccagacacgc
ctgccactcagctcaccacggtcagaggtcatgtacctcaagcccactgccaataacctc
agcgtgccccaaggccacgtgggatgccacaccagcttcacaggcccagtcaccagcact
acagacacacctactaaccgcatgtccatcatacagacggacaatttccccactgagcct
aattatatgggcagcagacaacagtttgttcaaagtagttcaacattcaaagacccagag
cgagcgagcctcagagacagcggccacggtgacagcgaccaggctgacagcgaccaggac
accaataagggctcctgctgtgacatgtctgcaaaagaagccctcaagttgaaggctact
ggcgtgaaaccgccgcctttggaacaagatgaggattgtgtgaattgtacggaggagtgc
cgggtactgggtcactctgaccgctgctggatgccccagttccctacaggaggaaaccag
gccgagggcattgactaccgcaacaatatgtttgtgccagcggggatggagactgttccc
gagacagaaacctatgagactgtcaaccccaacggcaagaagacattctgtacatttgga
aaagagagacgtgaccacactattctggtcgccaatgtcaagccctacttgaaggcaaaa
cgggccctcagcccactgctccaagaggtaccctcagcctccaacagtcctacaaagggc
tgctccaccaattctccttgttcctcaatcaaaagcccagcagacggagctgaaggtaaa
cctcctcctgcctcgtgctccggccactacgggcctcctgatggtcagtacctgtcccca
accaaacaaaccagagaccagggggtctacccacccttgccgccctcagacccagtggcc
aaggtgctcgccgaggcacgctccaggatcagccaagaggctgcaggggaaatggagtgt
cccatggagcagatggagcctgacgtaaatcgtgacggaatggatgctgaccaggtggtg
agagacatcgacaagctattgcaggactgcagaggaagtgaggccactggcacactcagg
aagtga
DBGET
integrated database retrieval system
