Hippoglossus stenolepis (Pacific halibut): 118109016
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Entry
118109016 CDS
T08308
Symbol
lrrc4ca
Name
(RefSeq) leucine rich repeat containing 4C, genome duplicate a
KO
K07523
netrin-G1 ligand
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
118109016 (lrrc4ca)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
hsp04515
]
118109016 (lrrc4ca)
Cell adhesion molecules [BR:
hsp04515
]
Immunoglobulin superfamily
NGL family
118109016 (lrrc4ca)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
ig
V-set
LRR_14
Ig_2
LRR_9
LRRNT
LRR_NXF1-5
DUF7617
Ig_6
Sp38
Syndecan
Motif
Other DBs
NCBI-GeneID:
118109016
NCBI-ProteinID:
XP_035011692
LinkDB
All DBs
Position
5:complement(20044271..20093860)
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AA seq
647 aa
AA seq
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MLNKMTSYQQQQMMRGPRWNRALSDPLLVLLLALQLLVVAGLVRAQTCPSVCSCSNQFSK
VICTRRGLRDVPDGISTNTRYLNLQENLIQVIKVDSFKHLRHLEILQLSKNHIRKIELGA
FNGLASLNTLELFDNRLTTIPNGAFEYLSKLKELWLRNNPVESIPSYAFNRVPSLRRLDL
GELKRLSYISEGAFEGLSNLRYLNLGMCNLKEIPNLIPLVKLDELEMSGNQLSVIRPGSF
KGLIHLQKLWMMHAQIQIIERNSFDDLQSLVELNLAHNNLTLLPHDLFTPLHHLERVHLH
HNPWNCNCDILWLSWWLKEMVPANTSCCARCSSPTHHKGRYIGELDQNYFHCYAPVIVEP
PTDLNVTEGSAAELKCRASSLTSVSWITPNGSVMTHGAYKIRISVLNDGTLNFTNVTMQD
TGTYTCMVSNSAGNTTASATLNVSSTENSSFSYFTTVTVETIETPHNEGFTTSVQQKVGP
TPSAGAWESVSATSTTTTTLRTTLFTRATEKTYTIPVTELGGDGLLNGLDEVMKTTKIII
GCFVAITLMAAVMLIIFYKMRKQHHQQNHHAPTRTIEIINVDEDCVTGGPGMEGHLTLPP
LEHEHLNHYNTYKSAYNHATMNSIHSSAHEPLLIRASSKDNVQETQI
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgttaaacaagatgacctcctatcagcagcagcagatgatgcgaggtcctaggtggaac
cgggccttgtccgaccctttgctcgtgctgcttctggccctccagctgctggtggtggca
gggctggtacgtgctcagacgtgcccctctgtctgctcctgtagtaaccagttcagcaaa
gtcatctgcacccgccggggcctgcgggacgtccccgatggcatctcgacaaacacgcgc
tacctgaatctgcaagaaaacctcattcaggtcataaaggtggacagcttcaagcatctg
agacatctggagatcctgcagctgagcaaaaaccacatacgcaaaattgagctgggtgcc
ttcaatggactggccagcctcaataccttggagctttttgataaccgcctcaccaccatc
ccaaacggggcatttgagtacctgtccaaacttaaggagctttggctgaggaataacccc
gtggagagcattccctcctatgctttcaacagagtgccctcattacggcggctggacctc
ggggagctcaagcggctctcctacatttctgagggggcctttgaagggctgagcaatcta
cgctacttaaacctgggaatgtgcaatctgaaggaaattcccaaccttattcccctggtg
aagctggatgaactggagatgtcggggaaccagctatctgtcatccggcctggctctttt
aaaggactcatccatttgcaaaagctgtggatgatgcatgcccagatccagatcatagaa
aggaactcttttgatgacctacagtcgctagtggagctcaatctagcccacaacaacctt
accctgttgccccatgatctcttcactcctttacatcacctggagagggtgcacttgcac
cacaacccctggaattgtaactgtgacatcctctggctgagctggtggctcaaagagatg
gtcccagcaaacactagctgctgtgcccgctgcagctcacccacccaccacaagggacgg
tacattggtgagctggaccagaactactttcactgttatgctcctgttattgtggagcct
cccacagacctaaatgtgacagaggggagcgctgcagagttgaaatgcagagccagctcc
ctgacctctgtaagctggattacgccgaacggctccgtcatgacacacggagcgtacaag
atcagaatctctgtgctgaatgacggcacgctgaacttcactaatgtcaccatgcaggac
acaggcacatatacgtgtatggtcagtaattctgcaggtaacacgacagcctccgccaca
ctcaacgtgtcctcgacagagaacagcagcttcagctacttcaccacggtaacagtggag
accatagagacgccacacaatgaaggcttcaccaccagtgtgcagcagaaggtgggcccc
accccctcagctggggcatgggagtccgtttcagccacgtcaacgacgaccaccacgttg
cggaccacgctcttcacccgcgccacggagaagacttacacgatccccgtcacggagctg
ggcggggatggcttactcaacggcttggatgaggtgatgaagacgaccaagatcatcatc
ggctgcttcgttgcgatcacgctgatggccgccgtcatgttgattatcttctacaagatg
cgcaaacagcaccaccagcagaaccaccacgcacccacacgcactattgagatcattaac
gtggacgaggactgcgtaacagggggcccgggcatggagggccacctgactctgcctcct
cttgagcatgagcacctcaaccactataacacctacaagagtgcgtacaaccatgccact
atgaactccatacacagctcagcgcacgaacctttgttaatccgggccagctcaaaagac
aatgtacaagagacccaaatctaa
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