Hippoglossus stenolepis (Pacific halibut): 118109114
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Entry
118109114 CDS
T08308
Symbol
tdrd12
Name
(RefSeq) putative ATP-dependent RNA helicase TDRD12
KO
K18409
ATP-dependent RNA helicase TDRD12 [EC:
5.6.2.5
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
hsp03036
]
118109114 (tdrd12)
Enzymes [BR:
hsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
118109114 (tdrd12)
Chromosome and associated proteins [BR:
hsp03036
]
Eukaryotic type
Gene silencing
piRNA pathway
118109114 (tdrd12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TUDOR
CS
Helicase_C
Motif
Other DBs
NCBI-GeneID:
118109114
NCBI-ProteinID:
XP_035011847
LinkDB
All DBs
Position
5:complement(2460786..2489644)
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AA seq
1424 aa
AA seq
DB search
MLEMSILKVENPSCLWGRVVRCRGTNTETTEEYNSMLSQINLFYHDVTKDLCKLKPTSIE
EGQVCVVYWSVMKLWCRAVVESITMDSVSCKARCLLVDHGERLVIASDQIRVAVQNFLQL
PFWVKRFHLARIKPTTLRVCVYQENAELIPTAHWDSSATLYLHNLLQASTWTEAVLLESD
SDSTSIELYLTVGNIKICVNDDLVAKRFAYYTRESAESSGLDEVDRFPIMLSSSILTQSA
STTSSKPTAVTQPPAGKHTDVTASDRHQGRACDWLTAPYSPQSQQHELRTSNGDCRPNIT
EEQLSTGSQSQSSSQTAATESDSSDDTDSSLAAALTRNLSLFKFLKFLNPGSSYQQATHS
VGEIEELNDCQPKELTSASSPCTGQEELTPLHNSEPVTSDEDVVHISCKGSLVESGPAET
KKMRSSELAGACSRLLEWLNPEPLNPDPEAGDDAVVPSEPRSNGILVHSALPVQPCSSLD
DAPITEALRLVLQRKQYNTLSPADCYSWPAVSRGCNTIIVSHIADQPLSYLAPLLTHILL
NSIFSSLTSSTGPIAVLLCPGWEKVQQVYDLLEDFKITHMLHPIVLLLGVGKDEAKAIRI
PKNCLLLVTTPFSFVRLLSCHCFMFLRLHHLLLDEADQLFTFAPDEMEIILQHFQKVTSS
EEKASSPLQLVAVAKRWTSQVEGLLTNHMPYPCIVMTVPEEAALYGNVQQFILMTLESSK
ISELLGMLDFSPDVGQKTLIIANCAQEVEDVFKAVSHKSAFCLKTHEGLTYQFDFVIQQW
RKNIGPGTHVILVTTNECLKCFGIRDASCVIHYGFPTSPKLFGSRLFSMSENFRNLSERV
STQDQTASRPPVTRSVLLISERNAPHVVGVVRYLGRTNALLPPELLSFGHGIHMAREDLK
TNRPLCSYLKSFGVCRDSRTCPDRHKFISQLDQSDLPAAGVIEVLPLYIKTASVFYGRIV
RKDDNGFDGLASEMASYYADKKPGPGTELSEGGLYAVQEDNDFHRVKILSVPGRGDHLFF
RVLVQFIDTGKEEEVKSHQILQLPEQFHSLSCQAVEIIVCRIKPVDAEIDWHPKVTRAIS
QKIRGLQHRARAVLSLGNTVFVDPMVRVSQVPGMKTVINEYSVQSEILNTGMGVSNAEHL
KLLRTLCQEGEDSSSKEAGHTYGLKDNSVSLEVRIKAEEEVLAEVFRAAEARKLSAPPQL
EPCEPLNPVSPMNHTPVPAPPACQLRLFPVFEQEALSEIQSADEQRNRDGGELCPTTNLA
ACLNSCDSGGNESKSQQVTISTNEKQYEKKSFHPQIRWYQTPDAMIVTVKLMNAESQRCD
FYPDRVIYSGRVNSQSYRAELELQGNIAVDRCCWEMKSNEPVLKLVKQQQGHWEKLLRNK
NIFVSYDMEHFEENEDKAPNGLWFVGNTGEDNCYVNSESGSESD
NT seq
4275 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaaatgtcaattcttaaggttgagaacccctcctgtctctggggtcgggtcgtt
cggtgtcggggcactaacacagagacgacagaggagtacaacagtatgttgtctcagatt
aacctcttctaccacgacgttactaaggacctgtgcaaactgaagcccacgtcaatagag
gagggacaggtgtgtgtggtgtactggtcagtgatgaagttgtggtgtcgggccgtggtg
gaatcaattactatggactctgtatcctgtaaagctcgctgcctgctggttgaccacggt
gaacgtctcgtcattgcttcagaccagattcgagttgctgtacagaacttcctccagctg
ccattttgggtgaagaggttccacctggcacgaatcaaaccaacaaccctgcgagtgtgt
gtttaccaggagaatgcagagcttattccgaccgctcattgggacagctccgctacgctc
tacctacacaacctgctacaagcgtcaacttggacagaggctgtgttgcttgaatctgac
tcagactccacctccatcgagctctacctaactgttggaaacatcaagatctgtgtgaat
gatgaccttgtggccaagaggtttgcatattacaccagagagtctgcggaaagcagtggg
ttggatgaggtggatcgatttcccatcatgttgtcctccagcatcttaacccagagcgcc
tccacaacctcaagcaagccgacagcagtaacacaaccacctgctggtaaacatacggat
gtgactgccagtgatagacatcagggtagagcatgtgattggctgacagctccctattcg
cctcagagccaacagcatgagctgaggacctctaatggagactgtaggccaaacatcaca
gaagaacaactgtctaccggcagccaatcacagagcagctctcagactgctgctacagag
agtgactcatcagacgacactgactcctctctggctgcagctctgaccagaaacctcagt
ttgttcaagttcctgaagtttctgaatcctggcagcagctatcagcaggcgactcacagt
gttggtgagattgaagagctgaatgactgtcaacctaaagagctgacttcggcctccagc
ccctgcacaggacaggaagaattaacccctttacacaacagtgagcctgtaacatcagac
gaggatgtggtccatataagctgcaaaggtagtttggtagagtcaggaccagcagagaca
aagaagatgaggagcagtgaattggccggggcttgttcacggcttttggagtggttgaac
cccgagcctctgaaccctgatccagaagctggagatgacgctgttgttcccagtgagccc
aggtcaaatgggattctggtgcactctgcgctcccagttcagccctgcagcagtttggat
gatgcccccatcactgaagctctccgcttggtgcttcagaggaagcagtacaacactctg
tctccagctgactgttacagctggccagctgtgtctcgaggatgcaacaccatcattgtg
tcccacattgctgaccagccgctcagctacctagcaccactcctcacccacatcctgctc
aactccatcttcagttccctcacctccagcacagggcccatcgcagtgctgctgtgtcca
ggctgggagaaagtccagcaggtgtatgacctgctggaggatttcaagatcacccacatg
ctccatcccatcgtcctgctgctgggtgttgggaaggacgaggccaaggctatcaggatc
ccgaagaactgcctgctgttagtgaccacaccctttagttttgtccgtctgctgtcttgt
cactgcttcatgttcctgcgtcttcatcacctgctgttggacgaggccgaccagctcttc
actttcgctccggatgagatggagatcattttgcagcatttccagaaggtgacctccagc
gaggagaaggcctccagtcctctgcagcttgttgctgtggcgaaaagatggaccagtcaa
gtggagggattgttaaccaatcacatgccctacccctgcattgttatgactgtccctgag
gaagctgctctctatggtaacgttcagcagttcatcctcatgactctagagagcagtaag
atctcagaactgttggggatgttggatttcagcccagatgttggccagaagactctgatc
atagccaactgtgctcaggaagttgaagatgtgttcaaggccgtgagtcacaaatctgct
ttctgcctcaagactcacgaggggttaacataccagtttgactttgtcatccagcagtgg
aggaaaaacatcgggcctggaactcatgttattctggtgaccaccaacgagtgtctgaag
tgttttggaatcagagatgcatcttgcgtcatccactacggtttccccacttctcccaag
ctgtttggcagtcgactcttcagcatgtctgaaaacttcagaaacctctcagaacgggtt
tccacccaggatcaaacagcgagccgccctcctgtcaccaggtcagtgctgttgatctca
gagaggaacgctcctcatgttgtgggggttgtgcgttacctgggacgaaccaacgccttg
ctgccccctgagctactgtctttcggccatggcatccatatggccagggaggacctgaag
accaacaggcctctctgcagctacctgaagagctttggagtctgcagagacagtagaaca
tgtcccgaccgtcacaagttcatttcccagctggatcagtccgaccttcctgcagctggg
gtcatagaagttttacctctctatatcaagacggcatcagtcttctatggtcgcatcgtc
aggaaagatgataatggttttgatggcttagcatctgagatggcttcttactatgctgat
aagaaaccaggacccggcacagagttgtcggaaggaggcttatacgctgtgcaggaggac
aacgacttccacagggtgaagatcctctctgtcccaggcagaggtgaccacttgtttttc
agggtcttagtgcagtttattgacactggaaaggaagaggaggtgaaatcccatcagatc
cttcagctgccggagcagtttcactctctgtcctgccaggctgtggagatcattgtctgc
cgcatcaaaccagttgatgccgagatcgactggcacccaaaggtcaccagagccatcagt
cagaagatccgaggtctgcagcaccgtgccagagcagttctcagtctgggaaacactgtc
tttgttgatcccatggtccgggtgagccaggtgccaggtatgaaaactgtcatcaacgaa
tatagtgtccagtctgagattctgaatactggaatgggagtcagcaacgcggagcatcta
aaactgctgaggacactgtgccaggagggtgaagacagcagcagcaaagaggcaggccac
acatacgggttgaaggacaactcggtgtctcttgaagtcaggatcaaagctgaggaagaa
gttctggctgaagtcttcagagcagccgaggccaggaagctttctgcccctcctcaactc
gagccatgtgagccattaaacccagtatctccaatgaaccacaccccagtcccagcacca
ccagcttgtcaactccgcctgttcccagtgtttgagcaggaagctctctcagaaattcag
tctgcagatgaacagaggaacagagatggaggagaactttgtcccacgaccaacctggct
gcttgtctcaactcctgtgatagtggtggcaatgaaagtaaaagccagcaggtcaccatc
agcactaatgaaaaacagtacgagaaaaaaagtttccatcctcagatccgctggtaccag
acacccgacgctatgattgtaacagtgaagctgatgaacgcagagagtcagcgctgtgac
ttctaccctgacagggtcatctacagtggcagagtgaacagtcagtcctacagagctgag
ctggagcttcagggcaacatcgctgtggaccgctgctgctgggaaatgaagtccaatgag
cctgtcctcaaactggtcaaacaacagcaggggcactgggaaaaactactcaggaacaag
aatatttttgtgagttatgatatggagcattttgaagagaatgaagacaaagcaccaaat
ggtctgtggtttgtggggaacacaggagaggataactgttatgtgaactcagagagtggc
agtgagagtgactga
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