Hippoglossus stenolepis (Pacific halibut): 118109277
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Entry
118109277 CDS
T08308
Name
(RefSeq) transcription factor SOX-6 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hsp03000
]
118109277
Transcription factors [BR:
hsp03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
118109277
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Ortholog
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GFIT
Motif
Pfam:
HMG_box
HMG_box_2
AAA_23
Activator_LAG-3
Motif
Other DBs
NCBI-GeneID:
118109277
NCBI-ProteinID:
XP_035012156
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Position
5:8937961..9043695
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AA seq
775 aa
AA seq
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MRMMSSMRTTPPFQQPSEEEEVAGQDAAWAKHERESPKETASPSSHDLPHPDELQPIREK
TTDIEWDNVGPAVMDNESNKICSVYSYQTNSTSPHKPEECSRDRGEPMIGLAFGTPERRK
GSLADVVDTLKQKKLVELTKTEQDEPSCMERLLSKDWKERVDRLNASELLEEVKGTPESL
EEKEHQLSTMIGQLINLREQLLAAHDEQKKMAASQLEKQRQQMELARQQQEQIARQQQQL
LQQQQKINILQQQIQVQGHMPPLMIPVFPHDQRSLAAAAAAQQGFLFPQGMSYKPAGDNY
PMQFIPSTMAAAAASGLSPLQLQQLYAAQLASMQISQGAKMTPLPQAPNSSGPLSPSALK
SERRASSPITQIKEEGSTQPLNLSARPKTAEGLRSSTSPTQGLFCGNKNSPTGMGKGRIP
SPTPIMGRNSLDILSSLNPTALFGDQDAVMKAIQEARNMREQIQREQLHQQQQHAGHQSL
EAKLSALSGMTLNNGNKERLHYETLSQHLGKLGEDAGKMVHRVIDLTRPEDLDGNNVTEA
RVFREARGRNTAEPHIKRPMNAFMVWAKDERRKILQTFPDMHNSNISKILGSRWKSMTNQ
EKQPYYEEQARLSKIHLEKYPNYKYKPRPKRTCIIDGKKLRIGEYKQMMRSRRQEMRQFF
VGPQPQIPLGNSPGVVGLYPGAITMATTATPSPHLTSDCSSNSASPEPAIPVIQSTYVVK
SEPVGGSNGGGVRALALPRDPANGDEEMDMYEDFDDEPKSDYSSDRETREVISAN
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atgagaatgatgtcttccatgcgaacaacgcctccctttcaacaaccatctgaagaagag
gaagtggccggtcaggacgcggcctgggccaaacacgagcgagagagcccgaaggagacg
gcatctccctcttcgcatgacctaccccaccctgacgagctgcagccaatcagagaaaag
acgacggatattgagtgggacaacgttgggcctgctgtgatggacaatgaaagcaataaa
atctgctcggtctactcctaccagactaactctacctctccacacaagccagaggagtgt
tccagggatcgcggggagcccatgatcggcctcgcgttcgggaccccggagcgccgcaaa
ggcagccttgcagacgtggtggacacactgaaacagaagaagcttgtggagctgacaaag
acagagcaagacgaaccatcgtgcatggagaggctcctctcaaaggactggaaggagcgc
gttgaccgcctgaacgccagtgaactgctggaggaggtcaaaggtacgccagagtctctt
gaggagaaggagcaccaactttccaccatgattggtcagctgatcaacctgagggagcag
ctcctcgccgcccatgatgagcagaaaaagatggcggcctcgcagctggagaagcaaagg
caacagatggagctggcccggcagcagcaggagcagattgccagacaacagcagcagctc
ctgcagcagcagcagaagatcaacattctccaacaacagatccaggtccagggtcacatg
cctccgctgatgatcccagtgtttcctcatgaccagcggtccttggctgctgccgctgct
gcacagcaaggcttcctcttcccacagggcatgtcctacaagccagcaggtgataattac
cccatgcagttcattccatcgacaatggcagctgcagcggcatctggactgagcccgtta
caactacagcagctgtatgcagcccagctggcaagcatgcagatctcacaaggagccaag
atgactcccctcccacaagctcccaactcctccggtcccctctccccctctgcactgaag
agtgagaggcgagcgtccagtcccatcactcagattaaggaggaaggatccacgcagcca
ttgaacctctcagccagacctaagacagctgagggtcttcgctcctcaacgtccccaaca
caaggtctgttctgtggaaacaagaacagccccacaggcatgggcaagggccgcatcccc
agtcctacccccatcatgggcaggaactctcttgacatcctgtccagcctgaaccccaca
gcgctgtttggggaccaggacgcagtgatgaaggccatccaagaggcgaggaacatgagg
gagcagatccagcgcgagcagctccaccagcagcagcagcatgcaggacatcagagtctg
gaggccaaactgtccgccctcagcggcatgaccctgaacaacggcaacaaggagcggctg
cactatgagacgctgagccagcacctggggaagctcggagaggatgctgggaagatggtc
caccgggtcatcgacctgacgagaccagaagatctggatgggaataatgtcacagaggcc
cgagtattcagggaggcgcgaggcaggaacaccgccgagccccacatcaagaggcccatg
aacgccttcatggtttgggccaaagacgagaggaggaagatcctgcagactttccccgac
atgcacaactctaacatcagcaagatcctcggctctcgctggaaatccatgaccaaccag
gagaaacagccgtactatgaggagcaggcccgtctgagcaagatccacttggagaaatac
cccaactacaagtacaagccgcggcccaagaggacctgcatcatcgacggcaagaagctg
cgcatcggagagtacaaacagatgatgaggtcacgacgtcaggagatgaggcagttcttt
gtggggcctcagccacaaattcctcttggcaacagcccaggagtggtaggactttacccc
ggtgccataaccatggcgacgacagccacgccatccccacacctgacctcagactgctcc
agcaactcagccagccctgaaccggccatccccgtcattcagagcacatacgtggtaaag
tccgagccagttggaggcagcaatggcggcggagtcagagccttggctctgcccagagat
cccgccaatggagacgaggagatggacatgtacgaagactttgatgatgagccgaagtca
gactatagcagtgaccgtgagacgcgggaggtcatcagtgccaactga
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