Hippoglossus stenolepis (Pacific halibut): 118109314
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Entry
118109314 CDS
T08308
Symbol
ercc3
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03022
Basal transcription factors
hsp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
118109314 (ercc3)
09124 Replication and repair
03420 Nucleotide excision repair
118109314 (ercc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsp03021
]
118109314 (ercc3)
03400 DNA repair and recombination proteins [BR:
hsp03400
]
118109314 (ercc3)
Enzymes [BR:
hsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
118109314 (ercc3)
Transcription machinery [BR:
hsp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
118109314 (ercc3)
DNA repair and recombination proteins [BR:
hsp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
118109314 (ercc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
AAA_22
Motif
Other DBs
NCBI-GeneID:
118109314
NCBI-ProteinID:
XP_047196573
LinkDB
All DBs
Position
1:9069211..9076522
Genome browser
AA seq
783 aa
AA seq
DB search
MGKRDKGDRESKKSKKRFHDEEDDEDEAGGSESQEAIPAAAGKQVDESGTKLDEYGAKDY
RAQMQLKNDNPSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPNHVHEYKLTAY
SLYAAVSVGLQTADIVEYLQKLSKTSVPDGIVQFIQLCTVSYGKVKLVLKHNRYFVESAF
PDTIQRLLQDTVIRECRLRTADGADTELITEIIHSKSAIAKSLQEKAGTSNSQQPSDGQT
STQQVPEDIFSYYEQMDKEEEEEEETQTVSFEIRQEMIEELQKRCIQMEYPLLAEYDFRN
DTVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRK
RCLILGNSSVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKR
SWEAERVMEWMRSQEWGLIILDEVHTIPARMFRRVLTIVQAHCKLGLTATLVREDDKIVD
LNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILIYTMNPN
KFRACQFLIRFHERRNDKIIVFADNVFALKDYAIRLNKPYIYGPTSQGERMQILQNFKHN
PKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAYF
YSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEDLMFSTRDEQQQLLLKVLAA
SDLDAEEEVVAGEFGGRPQFSRRTGTMSSMSGADDSVYMEYHSRGSKSSALKGIHPLFKR
FRK
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaaagggacaaaggagaccgcgagtcaaaaaagtccaagaagcgtttccacgat
gaggaagacgatgaggacgaggccgggggcagcgagtctcaggaggccatacccgctgcc
gcagggaaacaagtggacgagtccggcaccaaactggacgagtatggagccaaagactac
cgagctcagatgcagctgaagaacgataacccttctcggcccctctgggtggccccagat
ggccacatcttcctggaggccttctcaccggtgtataagtacgcccaggatttcttggtg
gccatcgcagagccggtgtgccggccgaaccacgtccacgagtacaagctgacggcctac
tctctgtatgcagccgtcagtgtggggctgcagaccgctgacatcgtggagtacctgcag
aaactcagcaagacgtctgtacctgatggaatcgtgcagtttatccagctctgcacagtg
agctacggcaaagtcaagctggtgctcaagcacaacaggtactttgtggagagtgccttc
cccgatacgatccagcgcctcctgcaggacactgtgatccgtgaatgtcgtctgcgtact
gcagatggtgccgacactgagctcattactgagatcatccacagcaagtcagcgatcgcc
aagtctcttcaggaaaaggcaggtacatccaactcacagcagcccagcgatggacaaact
tcaacccagcaagtccccgaggacatcttcagctactatgaacagatggataaagaagag
gaggaggaggaggagactcagactgtgtcctttgagattcgccaggagatgatcgaagaa
ctgcagaagcgttgcattcagatggagtaccccctcctggcagagtacgactttcgcaat
gatacagtcaacccagacatcaacatagacctgaagcccaccgctgtgctgcggccctac
caggaaaagagcctgcgcaagatgtttggaaacggacgtgctcgttctggggtcatcgtg
ctgccctgcggagctggcaaatctctggtgggcgtgacagcagcgtgcacagtgcgtaaa
cgctgcctgattctgggtaactcctctgtgtcggtggagcagtggaaggcccagttcaag
atgtggtccaccatcgatgactctcagatctgccgcttcacgtccgacgccaaggacaaa
cccatcggctgctcggtggccatcagcacctactccatgctgggtcacaccaccaagcgc
tcctgggaggccgagagggtcatggagtggatgcggagccaggagtggggactcatcatc
ctggatgaggtgcacactatccccgcccggatgtttcgtcgtgttctgaccatcgtccag
gctcactgcaaactggggctcactgccacactggtcagggaggacgacaagattgtggac
ctcaacttcctaatcgggccaaagctgtatgaggccaactggatggaactgcagaacaac
ggctacatcgctaaagtccagtgtgcagaggtttggtgcccgatgtctccagagttctac
agggagtacgtggccattaagacgaagaagcgcatcctaatttataccatgaaccccaat
aagttccgagcctgccagtttctcattcgctttcatgagcgccgcaatgacaagatcatt
gtctttgctgacaacgtgtttgccctgaaggactacgccattcgcctcaacaagccttac
atctatggtccgacatctcagggggagcgaatgcagattttacagaacttcaaacacaac
cctaagatcaacaccattttcatctccaaggttggagacacctcatttgatttgccagaa
gccaatgttctgatccagatctcctcccatggggggtctcgcaggcaggaggcccagagg
cttggtagagtcttacgagccaagaaaggaatggttgcagaggagtacaatgcctacttc
tattcgctggtgtcccaggacacacaggagatggcttactccaccaagaggcagagattc
ttggtggaccagggctacagctttaaggtcatcactaagttggcaggtatggaggaagaa
gacttgatgttttccaccagagatgagcaacagcagctgctgctgaaggtcctcgctgcg
tcagacctggacgctgaggaggaagtggtggcgggggaatttggcggacgaccacagttc
tcgaggcgaacgggcaccatgagctccatgtccggtgcagatgactccgtctacatggaa
tatcacagcagaggcagcaaatcctcggcgctcaagggcattcatccgctgttcaagcgc
ttcagaaagtag
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