Hippoglossus stenolepis (Pacific halibut): 118109351
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Entry
118109351 CDS
T08308
Name
(RefSeq) DNA-binding protein RFX7
KO
K09175
DNA-binding protein RFX7
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hsp03000
]
118109351
Transcription factors [BR:
hsp03000
]
Eukaryotic type
Other basic domains
RF-X
118109351
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFX5_N
RFX_DNA_binding
Pox_D5
Cdc6_C
Motif
Other DBs
NCBI-GeneID:
118109351
NCBI-ProteinID:
XP_035012296
LinkDB
All DBs
Position
5:13142285..13156219
Genome browser
AA seq
1496 aa
AA seq
DB search
MADDQQQPGQKPASGLGSLPALVPGLQGPEANALQFKIKNSICKSVQSKVDSILQDVEKF
TDIEKLYLYLKLPSGPSSGNDKRTENERGSSTPGLCDQSSMSSSRTQQMYAFNWIRNHLE
EHPETSLPKQEVYDEYKSYCDNLGYNPLSAADFGKIMKNVFPNMKARRLGMRGKSKYCYS
GLRKKAFVHMPSLPNLDLQKSGDGCELMESTGQSPSAEDEMRSAACGLVCEWAQKVLSRQ
FDNVEDLARFLLNSHYIGTKSMAALTVMTGTPTGMKTPTPVSAFVPTAEANSFQPQVKTL
PSPSVDAKQQLQRKIQKKQQEQKLHSPLPNECQVKRAEASTPGPTIPCGSPAMLSPQPTI
GIVVAAVPSPVTVQRTRQLMTSPGPIGTAEGKVLPVNFQVVTQSLKQSPKHPQNISASPV
GDRLARHSTRYAQILPKPSATSAITLRSPPTLLITNSPIKTVMPTSHVSSMNVVKMTAIA
LAPSSSSSTTVRPASAGVTTMAALDDSQQSHSAMSLSPAVRPSAPALTLNFSTDFRAVSD
ARHDNNPTSGSERTAAGVKEERVAKFRAASEPSFLVKCSLGPDRGLRIKSDPTSPPTSVA
VAGTQDSNNRNCHDSTLYLTVDNHNSNGNTSSNGSSAVTPTSKDPCLDAKSPRKRTGPVG
ETHVIPVKRVFISQQPMAVIDNLKPGVGAAMKRIPRPGTPARPESAPCKVTVKHTTIGPT
QILALSDSPITHTEGSQTVVKPQALVVKPNDHSLSTNTSTGAAGNNPSDQALLQQITGDP
RAIPANSGAHKASVMSDLKSTIWEEGHLDELRKQAFAQQIPAEHKQAPTNQLSLIAQPPE
TSGQLTLTQEMVDFAGSQPNMDYFPFNDDDMTQDSIVEELVQMEEQMKLKGLFSSCVDVS
LQGQSASNQGSILNAHQANTTFYHSAHSSTTPVQTPTPTPTPTPTPTPTSEMTLGHSMTR
ESPCSRMNPITPVDGAMGRHTPISTPLSNCSSSVPPSPVECRNPFAFTPINSSITGYHDA
SIVSSSPVKPMQRPMATHPDKAKLEWINNRYNSNSASPLSNHSIGILPSYQDLVDDQFRK
PHAFAIPGQSFQVQSRPDAAHFGRLTPISPVQQQPQQQQQQTPQQLVTGVTTPTKQESFA
VPAPLDNKASTSSASITFRCRSVSPAVRQRNFSGNTGPLTNTTNTSTTTRAVVSPFNSPI
TSEVLSILSNSQTVSSVHSMAQRSRSVPLNIMMQSEMLPVQGQSNTAKITNVLLSKMEAD
GDDSVRGLGINNLPSNYTARMNLTQILETTPGFTGGTAHQTQLPVGSSPAAFELQQHSYL
TTGSGEQVTFSTGDSQAQAGPGEQDQQQQQQQLQLQENPVQTQPQLLLQSTQQQEAEDEQ
QQLDFNNTVKDLLGDDGLNPSSQLVGQVASELNAVASDFSNDIRLTSDLSSSITDLNTLD
TNLLFDPNQQQEQYEDSTLEELKNDPLFQQICSDTVNSGFDWLESKDQPTTVEMLG
NT seq
4491 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgatcaacaacagcccggccagaagccggcctcgggattaggctctcttcca
gcgctggtgccgggactccaggggcccgaggccaacgctctgcagttcaaaatcaagaat
tcaatttgcaaatctgtacaatcaaaagtggacagcatattgcaagatgttgagaagttt
acagacatcgaaaaactctacctctaccttaagttgccttctggtcccagcagtggcaat
gataaaaggactgagaatgagagggggtcctccactcctggattatgtgaccagagttcc
atgtcatcaagccgcactcaacagatgtatgcattcaactggatacggaatcacctagag
gagcacccagagacctccctcccaaagcaagaggtgtatgatgagtacaagagctattgt
gacaatctcggctacaacccactgagtgcagcagactttggaaagatcatgaagaatgtc
tttcctaacatgaaggcacgtcgactgggcatgaggggcaaatccaaatactgttatagt
gggttaaggaagaaagcttttgttcacatgccgtctttacccaacctggatctgcagaaa
tctggtgatgggtgtgagctcatggagtcgacaggtcagtcgccgagcgctgaagatgag
atgagatctgcagcctgcggactggtgtgtgagtgggctcaaaaggtcctgagtcgtcag
tttgacaacgtggaggacctggcccgcttcctgctcaacagccactacattggtactaag
tccatggctgcactcactgttatgactggcacacccacaggaatgaaaacgccaactcct
gtctctgcgttcgtgcccacagctgaggcaaactccttccagccacaggtgaagaccctg
ccctcgccctctgttgatgcaaagcagcaactgcagcgaaagatccagaagaagcagcag
gagcagaagctccactcgcccctgcccaatgagtgccaggtcaagagagcagaggccagc
acccctggccccaccattccctgtggcagccctgctatgctctccccgcagcccacaata
ggcatcgtcgtagcagctgtccccagcccagtcacggtacagagaaccaggcagttaatg
acatcgcccggccctatagggacagcggagggaaaagtgctgcctgtgaacttccaagtg
gtcactcagtctcttaagcagtcccccaaacatccccagaatatctcggccagtccagtg
ggtgaccgtctggcgcgacacagcacgcgatacgctcaaatcctgcccaagccctctgcc
accagtgccatcacgctgcgctcaccccccaccctcctcatcaccaacagccccataaaa
actgtgatgcccacttcccacgtgagctccatgaatgtggtgaaaatgacggcgatcgct
ctggctcccagcagcagcagcagcacaactgtgcgtcccgcctcggcaggtgtgacgacc
atggctgctttggatgattcccaacaatcacactcagccatgtctctttctcctgcagtc
aggcccagtgccccagccctcactctgaacttctccacagactttagagcggtgtctgac
gctagacacgacaataaccccacatctggctcagagagaactgctgctggggtcaaagag
gagagagtggccaagttcagggctgccagtgagccaagcttccttgttaagtgttctctg
ggaccagatagagggttaaggataaaaagtgaccccacatcgcctcccacctctgtagct
gtagctgggactcaggacagcaataaccgtaactgccatgacagtactttgtacttgact
gttgataatcataactccaatggaaacacatcctccaatgggtcatccgctgttactcca
acgtcaaaagatccctgcttagatgctaaaagcccccgaaagcgcacaggcccagtcggg
gagacccacgtgattcctgtgaagagggtgtttatctcccagcagccaatggctgtaatt
gacaatctaaaacctggcgttggtgctgcaatgaagaggatccctcgcccgggaacccct
gccagaccagagagtgccccctgcaaagtgactgtgaaacacacaaccattgggcccacg
cagatcctcgcactctccgactcgcccatcacacacacagagggctcccagactgttgtc
aaaccccaggccttggttgtgaaaccgaatgaccactctctcagcactaacaccagcacc
ggggcagctggaaacaacccgtccgatcaggccttgctacagcagatcactggggacccc
cgggccataccagccaactcaggagcacacaaagcctctgtgatgagtgacttaaagagc
acaatatgggaggagggacaccttgacgagcttcgaaagcaggcgtttgctcagcagata
ccagcagaacacaaacaagcccctactaaccaactttcccttatagctcaaccccctgag
acctcaggccagctcacgctcacacaggagatggttgactttgcaggttctcagcccaac
atggactacttcccgttcaacgatgacgacatgacccaggacagcatcgtggaggagctg
gtgcaaatggaggagcaaatgaagctgaagggtctgtttagtagttgtgttgacgtgtct
ctacaaggccagtcagccagcaaccaaggctctatcctgaacgctcaccaggccaacact
accttctaccactctgcccatagcagtaccactcccgtccaaactcccactccaacaccg
acaccgaccccgactcccacgcccacttccgaaatgacgctcgggcacagcatgacgaga
gagagcccctgctcccgcatgaatccgatcacccctgtggatggagccatgggtcgccac
acacctatcagcactccactgtccaactgcagcagcagtgtcccccctagcccagtggag
tgcaggaacccttttgctttcactcccataaactcaagtataacaggttaccatgatgcc
agtattgtctccagcagtcccgtaaagcccatgcagaggccaatggcgacacatcctgac
aaggccaaactggagtggatcaacaaccgctacaacagcaactctgccagccctctatcc
aaccacagtattggtattctgcccagctaccaagacctggtagacgaccagtttcgaaag
ccacatgcttttgcaattcctggccagtcatttcaagtccagtcgagaccagatgctgct
cactttggccgcttgactcccatttctccagtgcagcaacagccacaacaacagcaacaa
caaacgccgcagcagctggtgacaggtgtaactactcccactaaacaggagagctttgct
gtgcctgcaccgttagacaacaaagcatcgacctcatctgcgtccatcactttccgctgc
cgcagcgtcagcccggcagtgcgccagaggaacttcagcggcaacaccggccctctgacc
aacaccacgaataccagcaccaccacccgtgctgtggtttctccctttaactctcccatc
acctctgaggtgctcagcatcctgtccaacagccagacagtcagctctgtccacagcatg
gcccagcggagtcggtctgtacctctgaacatcatgatgcagagtgagatgctgcccgtg
cagggtcagagcaacaccgctaaaattacaaacgtccttctcagcaagatggaagcggat
ggggatgattctgtccgtggcctgggaataaacaacctcccctctaactatacggcccgt
atgaacctcacacagatcctggagacgactcctggcttcactggggggactgctcaccag
actcagctgcctgtcggctcgagccctgctgccttcgagctccagcaacacagttacctc
accactggcagtggagaacaggtgactttctctaccggggacagccaagcacaagcagga
cctggtgagcaagaccagcagcagcagcaacaacagctgcagctccaggagaatcctgtg
cagacacaaccacagctcctcctccagagcacacaacagcaggaggcggaggacgagcaa
cagcagctggatttcaacaacactgttaaggacttgctgggggatgatggtctcaacccc
agctcccagttggtgggtcaggtagcctcggagctcaacgccgtggcgtctgacttctcg
aacgacatcagactgacctcagatctgtccagtagcatcactgaccttaacacattggac
accaacctgctgtttgacccaaaccagcagcaggaacaatatgaagattcaacactggaa
gaactgaagaacgacccgctttttcagcagatatgcagtgatactgtgaactctggtttc
gactggctagaaagcaaagaccagcctaccacagtagagatgctgggctaa
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