Hippoglossus stenolepis (Pacific halibut): 118109380
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Entry
118109380 CDS
T08308
Name
(RefSeq) transcription intermediary factor 1-alpha isoform X1
KO
K08881
tripartite motif-containing protein 24 [EC:
2.3.2.27
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
hsp01001
]
118109380
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
hsp04121
]
118109380
Enzymes [BR:
hsp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
118109380
Protein kinases [BR:
hsp01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
118109380
Ubiquitin system [BR:
hsp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
118109380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-B_box
ANCHR-like_BBOX
PHD
Bromodomain
zf-RING_UBOX
zf-RING_5
PML_CC
PHD-1st_NSD
USP7_ICP0_bdg
Motif
Other DBs
NCBI-GeneID:
118109380
NCBI-ProteinID:
XP_035012346
LinkDB
All DBs
Position
5:complement(10080110..10091685)
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AA seq
977 aa
AA seq
DB search
MEVQQRGGRGDRDGQSGDAPVIAVGNEAESVPVHEEKSAAVGPNHLDTCPSCRLNFHSRE
PKLLPCLHSFCRRCLPAPSRSLSLTELPSSLADSATKPLNVIRCPVCRQECMEVDVVENV
FVKDSAEAPSSTVERSTQLCMTCEDNTEAAGFCVDCVEYLCGTCVEAHQRVKFTKDHTIR
QKAEVSREVHGVSTQRPMFCDVHKQEPLKLFCETCDQLTCRDCQLVKHKDHNYQFLEDAY
KNHKQHMESMTHQLQEKRKLIEDVSNSINNGLLQVDQNRSSVHDEIKKSICSLILEINKK
GKMLMNQLEAVTKDHESGLRKQQEDIGYLSRHLDHVIDFTKWATVKNGGTALLYCKRLIL
FQIGNLLRAKCSTSFIPQSTVRFQCRSSYWASNMDLGSLVIESVPGHQLVGFQGIPHQQS
HPGQGPSGSPRGFAPGGPLNTLAQLQMQVDKLNPQAHWQPQPPPPPWTWYQSVRLQRTLP
GTLQGGSPSHSMPPPPGRRFTVPPPNHNSPTGTLLSPGFTPQPLRGVESSSNYQAKPMDL
FPPSPLYTHGAPLPINGGVSSSQSRIEPTYLNRTSDAGGPVYVLNPNHSQNLPPSLPHRN
VQGQQISPGYTAASQVEKPGTVSWETPETHQARGAVGSAVRKRRRSSPGPIIVIKDEPED
DNSYVQNNQRASLPDSTGEHPQLSAQGGGNKATAVPQSTEDKPHSLSKPSIRPLDQSKTD
VPHHVRSPGGEEQEVHDETRLEDSNDVSCAVCQRGGELLCCDKCPKVFHLACHVPSLLQS
PSGGWFCSFCRDLLVPEMEYDCDSKPEAKTLKTEPDSEGGLPPVDKRKCERLLLRLFCTD
PSSNCGEAASPSVCANNRVTIKGPMNLSTVKERLGAQQSVCYQSSAEFISDVRLVIGNCR
NFSEAVTGGRRLMELFEEQLTIIFSDQTIPEIKLEVIPAAPPDSQVSSPHSISQPAKRQR
TFSQDTTNCPSGEEGVL
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgcagcagaggggtggacgcggggacagagacggacagtccggggacgctcct
gtcatcgccgtggggaacgaggcggagagcgttccggtgcacgaggagaagtccgccgcg
gtcggtcccaaccacctggacacgtgcccctcctgccgcctgaacttccacagccgcgag
cccaaacttctgccgtgtctccactccttctgcaggaggtgtttgcccgcgccctcccgg
agtctgtccctgacggagctgcccagctccctggctgacagcgccaccaagccactgaac
gtgatccgctgtccggtgtgcaggcaggagtgcatggaggtggatgtggtggaaaacgtg
tttgtgaaggactcggctgaggctcccagcagcaccgtggagaggagcacccagctctgc
atgacctgcgaggacaacaccgaagctgctgggttttgcgtggactgtgttgagtacctc
tgtggcacgtgtgtggaagcccaccagagggtcaaattcaccaaggaccacaccatcagg
cagaaggcagaggtatcacgagaggtccatggagtgtcgacacagaggccgatgttctgt
gacgtccacaaacaagagccgctgaagctgttctgtgagacctgtgaccagctgacctgt
cgtgactgccagctcgtcaagcacaaggaccacaattaccagttccttgaagatgcttat
aaaaaccacaaacagcacatggagagtatgacccatcagctgcaggagaaaaggaaactg
attgaagacgtgtcgaactccattaacaatggacttcttcaggttgatcagaatcgttca
tctgttcatgatgaaataaagaagtccatctgcagtttgattctcgagataaacaaaaag
ggaaagatgctaatgaatcaactcgaggctgtaacaaaggatcatgagagcggcttgcgg
aaacaacaggaggacattggctatctgtcccgacacttggatcatgtcatcgacttcacc
aaatgggccacagtcaagaatgggggcacggcccttctgtactgtaaacgtctgattctg
tttcagattggaaacctcctgcgggcaaaatgcagtacctcatttattccacagagcact
gtgcgtttccaatgccgatcctcctactgggcctcaaatatggatctgggctctttagtg
atagagagtgtaccaggccaccagctggttggttttcagggcatccctcatcagcagtcc
caccctgggcaaggcccctcaggctcgccccgcggctttgccccgggaggtcccctcaac
acccttgctcagctccagatgcaggtggacaagctgaacccgcaggcccactggcagccg
cagccacctcctccaccgtggacgtggtaccagagtgtacgtctacaacgaacactccca
ggcaccctgcaaggaggctctccctcccacagtatgccacctccaccgggccgaaggttc
acggtgccgcctccaaaccacaacagcccaactggcaccttactgagccctgggttcaca
ccccagcctctgaggggggtggaaagcagctccaactaccaagccaaacccatggaccta
tttcccccctcacctttgtacacccatggtgcaccactgcccatcaacggcggcgtgagt
tcatctcaatcacgaattgagcccacatatctgaacaggacgagcgatgcaggtggtcca
gtgtatgtgctgaatccaaaccattcccagaacctgccaccgtctttgcctcacagaaat
gtgcaaggacaacagatttccccagggtacactgctgcatcccaagtggagaaaccaggg
actgtttcctgggagactccagaaacacatcaggcgcgtggagcagtgggctcagctgtc
aggaaaagacgaaggtcgtcaccagggcccatcattgtcatcaaagatgagccagaggat
gacaacagctatgtgcagaacaaccaaagagccagcctccctgacagcacaggtgaacac
ccacaactcagtgcccagggcggagggaacaaggccacagctgttcctcaaagcacagaa
gacaaaccccacagcctctcaaagccttcgatcaggccgctggaccagagtaagactgac
gttccacatcacgtccgttcgccgggaggagaggagcaggaagtccacgatgaaacacga
ttggaagactctaatgacgtctcctgtgctgtgtgtcagagaggaggggagctgctgtgc
tgcgacaagtgtcccaaagtttttcacctcgcttgccatgttccatctctcctccaatct
cccagcgggggctggttttgctctttctgccgtgacctgttggtgcctgagatggagtac
gactgtgacagcaaacctgaggccaaaacactgaagacggagccagactctgaaggtgga
ctgccccctgtggacaaacgaaagtgtgagaggctgctgctgcgcttgttttgcactgac
cccagttcaaactgtggagaggctgcctccccctcggtatgtgctaataacagggtgact
ataaagggaccaatgaatctgtcaactgtgaaagaacgactgggggctcagcagagtgtg
tgctaccaaagcagtgcagagtttatatcagacgtcaggctcgtcatcgggaattgcaga
aacttcagtgaggctgtcacagggggcaggaggctgatggagctgtttgaagagcagctg
acgatcatcttttccgaccaaaccatcccggaaatcaaactggaggtgatacctgccgcc
ccaccagactctcaagtctcatctcctcacagcatttcccagcctgcaaagcgccagcgc
acattttcccaggatacgacaaactgtcccagtggagaggagggagtcctataa
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