Hippoglossus stenolepis (Pacific halibut): 118109445
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Entry
118109445 CDS
T08308
Symbol
nedd1
Name
(RefSeq) protein NEDD1 isoform X1
KO
K16547
protein NEDD1
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
hsp03036
]
118109445 (nedd1)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
hsp04812
]
118109445 (nedd1)
Chromosome and associated proteins [BR:
hsp03036
]
Eukaryotic type
Centrosome formation proteins
Pericentriolar materials (PCM)
Other PCM proteins
118109445 (nedd1)
Microtubules and associated factors
gamma-tubulin ring complex
118109445 (nedd1)
Cytoskeleton proteins [BR:
hsp04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Gamma-tubulin complex components
118109445 (nedd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
WD40
WDR55
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR19_1st
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_RIG_2nd
WD40_RFWD3
Beta-prop_HPS5
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_IFT140_1st
Beta-prop_Vps41
NBCH_WD40
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_LRRK2
Beta-prop_NUP159_NUP214
Beta-prop_IFT122_1st
PEP5_VPS11_N
Beta-prop_DCAF12
Beta-prop_NWD2_C
Beta-prop_SCAP
Beta-prop_WDR35_TULP_N
Beta-prop_SPT8
Beta-prop_VPS8
KNTC1_N
Motif
Other DBs
NCBI-GeneID:
118109445
NCBI-ProteinID:
XP_035012448
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Position
5:complement(28463815..28475639)
Genome browser
AA seq
659 aa
AA seq
DB search
MEEMSRLVSTGDCVKIWDAVSMAPLEQFNPHSTSHPVAQAFWGSNNHYLVTSSSSGDKLV
LSSLKSTPVPLVELAEGKKQTRVCLSSSSQFLVSGGLDHCVHLWDLKTKRLHRSLKDHRE
EVTCVSFNTNDSYIASGSTSGDLVLHSLTTNQSSKAFGHGSNQPIHDLKFSTLKRSLLGS
VSDSGSVVLWDSNTQKELHDFDCAHKAPGTGLAFSPASELLVVSVGLDKKIVCYDTASKI
VLRSIRVDSPLTSVDFTPDGTGLVVGSTQGKIYQYDLRNSSTPTRITGAHKTSVTCLRFQ
SNTSRHKSSKLGATKISSTKRSSTRVSSSQPDPAPYPGPTPHRQLTSTAGVADADVMFRE
AEGQQGTEPLPALEKMSSVGRNSLDVFSPVRDDLRTQGTTGETPFGRTHVTSLEMLSREG
EGQQVVGRASLDIFSPVREDSHSGASSHRKTPLVATAGRCYSPLSVFQTPPPIKEEEPIT
AAAAEPCDSRKSDEASSSSLEGEVQSPPPASQQTNPGQPAPPFFTPEPSLRRANGFQAQL
SYDSPVHVAPPTTAAGPALSAAASASLSQNIAEVVGQGGAAPLSSLQIHFIQNMIHETLE
DFRDNCHRDVVNLQVEMVRQFYIQLNEIHGLIEKYSVNESLVEEIEKLREENRRLKTNY
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atggaggagatgagccgcctggtgtccacaggagactgtgtgaagatctgggatgcggtt
tccatggcgccgctggagcagtttaaccctcacagcaccagccaccctgtggctcaggcc
ttctggggctccaacaaccattacctggtcacttccagcagcagcggagacaaactggtg
ctttccagcctcaagtcgactccggtaccactggtggaacttgcagaggggaaaaagcag
acccgtgtgtgtctgagttcctcgtctcagtttctggtgagtggaggtctggatcactgc
gttcacctgtgggacctgaagaccaagagactgcaccgctccctcaaggaccatagagaa
gaggtgacctgtgtgtccttcaacaccaacgacagctacatcgcctccggctccaccagt
ggagatctggtcctccacagtctcaccaccaaccagtccagcaaagccttcggccacggc
agcaaccagcccatccatgacctgaagttctccacgctgaagcgttccctgctgggcagt
gtgtccgacagtggcagcgtggtcctgtgggactccaacacccagaaggagctccatgat
tttgactgcgcccacaaggccccgggcacgggcctggccttctcacctgccagcgagctg
ctggtggtcagcgtcggtctggacaagaagatcgtctgctacgacaccgccagcaagatc
gtgctcaggtcgatccgggtggacagtcctctgacctcggttgacttcactccagacggt
accggtctggtggtcggatccactcaggggaagatctaccagtacgacctgaggaactcc
agcacccccaccaggatcactggtgcacataaaacctccgtcacatgtcttcgcttccag
agcaacaccagcagacacaagtccagtaaactgggcgccaccaagatctccagtacgaaa
agatcctcaaccagagtgtccagcagtcagccagaccccgccccttacccaggccccacc
ccccacagacagttgacaagtacagcaggggtcgctgacgcagacgtgatgttccgggaa
gctgagggtcaacaggggacagagccgcttccagctttggagaagatgagcagcgttgga
cgaaacagtctggacgtcttctctcctgtacgagatgacctgaggactcaggggacgact
ggagagacgccgtttggaagaacacacgtaaccagtctggagatgttgtccagagaaggg
gagggtcagcaggtcgtgggtcgggccagtctggacatcttctcccccgtcagagaagat
tctcattcaggtgccagctctcatcgtaaaacccccctggtggccactgcgggtcggtgc
tacagcccactgtctgtcttccagacccccccaccaatcaaagaagaagagccaatcact
gctgcagcggctgaaccatgtgactccaggaagtctgacgaggccagcagctccagtctg
gagggggaggtccagagcccgcctccagcatcccagcagaccaatcccggccagccggcc
ccgcccttcttcacaccagagcccagcctcaggagagccaatggttttcaggctcagctg
agctacgactcacctgtccacgtagctccgcccactacagccgcaggtcctgctctgtct
gcagctgcgtccgcctcgctctcccagaacatcgctgaggtggtgggacagggaggagct
gctcctctctcctccctccagatccacttcatccagaacatgatccatgaaaccctggag
gacttcagggacaactgtcacagagacgtcgtcaaccttcaggtggagatggtccgacag
ttttacatccagctgaacgaaatccacggtctgatcgagaaatattctgtgaacgagtct
ctggtggaggagatcgagaagctgagagaggagaaccgccgactgaagaccaactactga
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