Hippoglossus stenolepis (Pacific halibut): 118109453
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Entry
118109453 CDS
T08308
Symbol
myo5c
Name
(RefSeq) unconventional myosin-Vc
KO
K10357
myosin V
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
118109453 (myo5c)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsp03019
]
118109453 (myo5c)
04131 Membrane trafficking [BR:
hsp04131
]
118109453 (myo5c)
03029 Mitochondrial biogenesis [BR:
hsp03029
]
118109453 (myo5c)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
hsp04812
]
118109453 (myo5c)
Messenger RNA biogenesis [BR:
hsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
118109453 (myo5c)
mRNA cycle factors
P-body specific factors
118109453 (myo5c)
Membrane trafficking [BR:
hsp04131
]
Others
Actin-binding proteins
Myosins
118109453 (myo5c)
Mitochondrial biogenesis [BR:
hsp03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
118109453 (myo5c)
Cytoskeleton proteins [BR:
hsp04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
118109453 (myo5c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
nSTAND3
AAA_22
AAA_16
Myosin_N
Motif
Other DBs
NCBI-GeneID:
118109453
NCBI-ProteinID:
XP_035012469
LinkDB
All DBs
Position
5:13204135..13216623
Genome browser
AA seq
1741 aa
AA seq
DB search
MALLELYTEFNRVWIPDLEHVWKSAEIVRDFHSGDKVLELLLEDGTKHHHPLDPSTPSLP
PLRNPDILVGENDLTALSYLHEPAVLHNLRVRFVESRIIYTYCGIILVAVNPYKQLPIYG
DAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNHKNQSIIVSGESGAGKTVSARYAMRYF
AIVSKSGSNTRVEDKVLASNPVTEAIGNAKTTRNDNSSRFGKYTEISFDRRYRIIGANMR
TYLLEKSRVVFQADNERNYHIFYQMCSCAQLPEFKSLRLMSADNFRYTSIGGDITIEGVD
DKKDMEETRRTFSLLGLKEDFQSDVFKVLAAILHLGNVEIKDSGKDKSSVSLSDPHLAVC
CELLAVSVEGLVRWLCHRRIVLVAETVVKPVTKERAGNARDALAKHIYALLFDCIINKIN
TALRVPGKQHAFIGVLDIYGFETFDINSFEQFCINYANEKLQQQFNLHVFKLEQEEYMKE
DIPWTLIDFYDNQPVIDLIEAKMGILDLLDEECLFPQGTDQTWLMKLYNYMDTNPLFEKP
RLSNEAFVIQHFADKVEYQCRGFLEKNRDTLYEELVDIMRASKLPFLALFFHEEEQSTAN
SKVKVRPARPGVKPANKQLRASVGDKFSSSLSLLMETLNATTPHYVRCIKPNDEKLPFEY
DSRRVVQQLRACGVLETIRVSAQSYPSRWTYIEFYSRYSILMSHQEAGLSDKKQTCKDVL
QRLIQDPNQYKFGRTKIFFRAGQVAYLEKLRLDRLRGASVTIQKHVRGWSQRRKFLRMRE
AAIILQQYIRGKRTIRKMVSAETLKRGWASMVIQRHWRGYRTRQIYQLVRLASVTIQAFT
RGWMARKRYKKMIEENKALVIQKYARAWLARRRFQTMRRLVLNVQLSFRVQKLRKKIEEQ
NKEGRGLMERLTSLASTHSQTVDRLQRVEAQLEKSTSQKASVEAREKKGKEDATQTIAQL
RQEINVLTLEKKKLDKMFEASTKEAKENFDVIKRSLLDEKETEARLRKIAENSTEIQRQD
HEKEVEDLKEEIKRLKEERVTLHRKLEEEGQVNSDLQEQVLQLTKHVKAIPELRRDLNNM
QNQRNNMDRRMKQHSEEARAKMNEITRQLLGGVVEEEVLLGLTPNDSEKIYEVEDLLAAF
EGLQKATRILETHQREQKEGYETQLEGLQLKADHLQNENSKLQNLFQEKSNVHENIRQEV
SRLSSENSVLPELKLQVSELQRQKQELELHAKELNRELAEKTEEITNTLQTKIKEESSQR
RHFEEKAEALEEVKRQLQGRVEDLEEANDHLRRQQLMESEAKSKLSEETSRLTAENMDFE
EQLDQRGRLIKKLQNQINSFESSQKVKQTSAPAMPKDYLGMLEYKREDEPRLIQNIILDL
KPKGVVVNMIPGLPAYIVFMCVRFADYLNDEAKLKSLMHATICAVKKVIMDYPKDFELVS
FWLSNTYQLLNCLKQYSGEEEFMKQNTAHQKKNCLQNFDLSEHRQILSDLAIHIYHQFIT
VMEKSITPEIVPGMLEHESLQGISSMKPTGFRKRSNSIYEESETYSISSIIQQLSVFHST
MNQHGMEQGLIKQAIKQLFYLVGATTLNNIMLRKDMCSCRKGMQIRCNISYLEEWLKEKG
LQSSNAIDTLRPLSQAAWLLQVNKSTDDDAKEITEKCTELNPVQIVKILNSYTPIDDFEK
RVPSSFVRKVQALVHDRDGSTQMMLDTDYRFQVTFPFCPSQQALELLQVPNSLHLGFLTR
I
NT seq
5226 nt
NT seq
+upstream
nt +downstream
nt
atggctttgctggagctgtacaccgagttcaacagagtgtggattccagatttagaacat
gtgtggaaatcagcagagatagtgagagattttcattctggagataaagtcctcgagttg
ctccttgaagatggaacaaagcaccaccaccctctggacccgtccactccaagcctccct
cctctcaggaacccagacatcttggtgggggagaatgacctcaccgctctcagttacctc
cacgaacccgccgttctgcacaacctcagagtgcggtttgtggagtccagaatcatctac
acctactgcggtattatactggtggccgtaaatccctacaaacagctccctatctacgga
gacgcaatcattcatgcctactcaggccagaacatgggagacatggaccctcatatattt
gctgtggcagaggaggcctacaaacagatggccagaaaccacaagaaccagtctattatc
gtcagcggtgagtccggagctggtaaaactgtgtctgctcgttacgctatgagatatttt
gccattgtcagcaaatctggcagcaacactcgagttgaagacaaagtcctggcgtctaat
ccagtaacagaggcaataggaaatgcaaaaaccaccaggaatgacaacagcagccgattt
gggaaatacaccgagatcagctttgacaggaggtaccgcatcattggagctaacatgagg
acctacctcctggagaaatccagagtggtttttcaggccgacaacgagcggaactatcac
atattttaccagatgtgctcctgtgctcagctgccagagttcaagagcctgagactgatg
agtgcagataacttccggtacacgtccattggcggtgacatcactattgaaggtgtagat
gacaagaaagacatggaggagactcgacggaccttctccctgctgggtttgaaggaagac
tttcagtcagacgtgttcaaagtgttggcagccattctgcatttggggaacgtggagatc
aaggactcgggaaaggacaaatcgtcagttagcctcagtgacccacacctggcagtctgc
tgtgagttactggctgtgagtgtggaggggttggtgcgctggctgtgccatcggaggatc
gttctggtggcggagacggtggtgaagccggtgaccaaggagcgggcggggaatgccaga
gacgccctcgccaagcacatctacgcactcctttttgactgtataattaacaaaataaat
acagcactgcgggtccctggaaaacaacacgctttcataggtgttctggacatttatggc
tttgaaacctttgacatcaacagcttcgaacagttttgcatcaactatgcaaacgaaaag
cttcagcagcagtttaacttgcacgtgttcaagctggagcaggaggagtacatgaaagag
gacatcccatggacgctgattgacttctatgacaaccagcccgtcattgacctgatcgaa
gcaaagatggggatccttgacttgcttgatgaagaatgcttgtttcctcagggcactgac
caaacctggctgatgaagttgtacaactacatggacaccaatcccctgtttgagaagccc
aggttatccaacgaggcttttgtgatacagcactttgcagacaaggtggagtatcagtgc
agaggttttcttgaaaagaacagagacactctctatgaagaactggtggatataatgaga
gccagtaagttgccttttctggccctttttttccacgaggaggagcaaagcactgcgaac
agtaaagtcaaagtcaggcccgccaggcccggagtgaaaccagccaataaacagctgaga
gcctctgtgggagataagttttccagctccctgtccttactgatggagacactgaacgct
accaccccacactacgtgcgctgcatcaagccaaacgatgaaaaactcccatttgaatac
gactccaggagggtcgtgcagcagctgcgagcctgtggcgtccttgaaactatccgcgtc
agtgcacagagctatccgtccaggtggacatatattgagttttacagccgatacagtatc
ctaatgtcacaccaggaggcgggcctcagtgacaagaaacagacctgcaaagatgtgctg
cagaggttgattcaggaccccaaccagtacaagttcggtcgcacaaagatcttcttccga
gccggtcaggtggcttatctggagaagctgcgtctggaccgacttcgaggagccagcgtt
accatccagaaacacgtccgcgggtggagccagaggaggaagttcctgcgtatgagagag
gcggccatcatcctccaacagtacatccgtggaaagaggacgatccgtaaaatggtgagt
gctgaaactctgaagcggggatgggcgtcaatggtgatccagagacactggagaggatac
cgcacgcgacagatctaccagttagtccgtctggcctctgtcaccatccaggccttcaca
cgaggctggatggcccggaaacggtacaagaagatgatagaagagaacaaagccctggtt
atccagaagtacgccagagcatggctggctcgacggcgattccaaaccatgcgcaggctg
gtgctgaatgttcagctttcattcagagtgcagaagctcagaaagaagattgaagagcag
aataaagagggccgtgggttgatggagagactgaccagcttggccagtactcactctcag
actgtggacagacttcagcgtgtggaggcgcagctggaaaaatccaccagccagaaggcg
tctgtggaggcaagagagaagaaagggaaagaagatgctactcagacaattgcacagctt
cgacaggagataaatgtactaacccttgaaaaaaagaaattggacaaaatgtttgaagct
tccaccaaagaggccaaagagaactttgatgtgataaagagaagtcttcttgacgagaaa
gaaactgaagcaaggctcagaaagattgcagagaacagcaccgagatccagagacaggac
catgagaaggaggtggaagatctgaaagaggagatcaagagactgaaggaggagagagtc
actctgcacagaaagttggaggaggaaggccaggtgaactccgacctgcaggaacaggtc
ctccagctcaccaagcacgtcaaggccattcctgagctgcgcagagatctgaacaacatg
cagaaccagagaaataacatggaccggaggatgaagcagcactcggaagaagcaagagcc
aaaatgaacgagatcacaagacaacttcttggcggcgttgttgaagaggaggttcttttg
gggctgactccaaatgactcggagaagatttatgaggttgaagatttgctggcagctttt
gaaggactgcagaaagctaccagaatactggaaacccaccagagagagcagaaggagggc
tatgagacccagcttgagggcctgcagttgaaagcggaccaccttcaaaatgagaacagc
aagctgcaaaacctgttccaggagaaaagtaacgtccatgagaacattcgccaagaagtg
tccagactcagcagcgagaactcggttctaccagagctgaaactgcaggtgtcagagctg
cagagacaaaaacaggaactggagctccatgcaaaggagctgaacagagagttggcagaa
aaaactgaggagatcaccaacactcttcaaacaaaaattaaagaagagagctcgcaacgc
agacactttgaggagaaagctgaggcgctggaggaggtgaagaggcagcttcaaggtcga
gtggaggatctggaagaggcgaacgatcacttgaggagacagcagctgatggagagtgag
gccaagagtaaactgagcgaggagacttcacggttaactgctgagaacatggactttgag
gagcagctcgaccagagaggccgattaataaagaaactccagaatcaaatcaacagcttt
gagtcatcacagaaagtcaagcaaacttctgcgccggcaatgcctaaagattacctcggc
atgttggagtacaagagggaggacgaacccaggctcatccagaacatcatcctggacctg
aagcccaagggtgtggtggtcaacatgatcccgggtctgccagcgtacatcgtcttcatg
tgcgtccgcttcgctgactacctgaacgacgaagccaaactcaagtctcttatgcatgca
actatctgtgctgtcaaaaaggtcatcatggattaccctaaagactttgagttggtctcc
ttctggctctctaacacgtatcagctgctcaactgtctgaagcagtacagcggggaggag
gaattcatgaaacaaaataccgcccaccagaagaagaactgtttgcagaattttgatttg
tcagagcacagacagattctcagcgacctggccatccacatctaccatcagtttatcacg
gtcatggaaaagagcatcactcctgagattgtgcctggtatgttggagcacgagagttta
caggggatttctagcatgaagccgacaggcttcagaaaacgttccaacagcatctacgag
gagtcggagacctacagcatctcctccatcattcagcagctcagcgtcttccactccacc
atgaaccagcatggcatggagcagggcctcatcaaacaggccatcaaacaactcttctac
cttgtgggggccaccacactcaacaacatcatgctccgcaaagacatgtgctcctgcagg
aagggaatgcaaatcaggtgtaacatcagttacctggaggagtggctgaaggagaaggga
cttcagagctctaatgctatagacactctgaggccgttgtctcaggccgcctggctgctg
caagtcaacaagtccacggacgatgacgccaaggagatcactgaaaaatgcactgaactc
aaccctgttcagattgtcaagattttgaattcatacacacctatagatgattttgagaaa
agagtgccgtcatcatttgtccgcaaggttcaggcattggtgcatgatcgtgacggctcc
acacagatgatgctggacacggattatcgtttccaggtcacgtttcctttctgcccgtct
cagcaggctctggagctcctgcaggtccccaacagtctccatctgggctttctgacccgg
atctga
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integrated database retrieval system
