Hippoglossus stenolepis (Pacific halibut): 118109470
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Entry
118109470 CDS
T08308
Symbol
gtf2h1
Name
(RefSeq) general transcription factor IIH subunit 1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03022
Basal transcription factors
hsp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
118109470 (gtf2h1)
09124 Replication and repair
03420 Nucleotide excision repair
118109470 (gtf2h1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsp03021
]
118109470 (gtf2h1)
03400 DNA repair and recombination proteins [BR:
hsp03400
]
118109470 (gtf2h1)
Transcription machinery [BR:
hsp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
118109470 (gtf2h1)
DNA repair and recombination proteins [BR:
hsp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
118109470 (gtf2h1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
GeBP-like_C
Motif
Other DBs
NCBI-GeneID:
118109470
NCBI-ProteinID:
XP_035012506
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All DBs
Position
5:13578567..13584356
Genome browser
AA seq
550 aa
AA seq
DB search
MASLSEEVLLVLKKVRQRKQDGTLYLMAERIAWGPEGKDRFTVSHLYADIRCQKISPDGK
AKVQLQLVLHTGESTTFHFSNESSAIKDRDAAKELLQQLLPKFKKKANKELEEKNRMLQE
DPVLFQLYKDLVVSQVISAEEFWANRLGGVNNADPALFNNKQEVGISGAFLADIRPQTDG
CNGLRYNLTADIIESIFRTYPAVKQKYSENVPHNLTEKEFWTSFFQSHYFHRDRINTGTQ
DIFSECAKQDEMGLKLMVTQGVKNPLVDLLSLEDKSLDEGYGVSTTLPSTSNANRTVKES
SNSAIIKRFNHHSAMVLAAGSRKGETPTDQASETSSTDGNSRDSDFFQPPVKKVKLQEAI
EYDDLQGENRPKTVPLNLKKSDRYAHGPVPLQSQQYTTSQEIINSVNYIRHEMANYKPNL
TQVLSSTAATSAIIALSPGGVLMQAGTQQAINQMIPTDVQGELKHLYVAAGELLRHFWSC
FPVNTPFLEEKVTKMKTNLERFQMTKLRPFQEKIQRQYLSTNLTGHLEEMLQTAYNKFHA
WQTRRMMRKT
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atggcatcactgtcagaagaagtgctgctggtactgaagaaggttcgccagaggaagcag
gatggaacactgtatctgatggctgaacgtatagcctggggtccggagggcaaggaccgc
ttcacagtcagccacctgtatgcagatatccgctgccagaagatcagcccggatggtaaa
gccaaagttcagctccagctggtgcttcacaccggcgagagcaccacattccacttttct
aatgagagcagtgcgatcaaagacagagacgctgcgaaggagctgctgcagcagctgctg
cccaagttcaagaagaaagccaacaaggagctggaggagaaaaacaggatgcttcaagag
gatcctgtgcttttccagttatataaagatctagtggtgagccaggtgatcagtgcggag
gaattctgggccaacaggttagggggcgtaaacaacgcagacccagcactgttcaacaac
aaacaggaagtcggtatatctggagcctttctggcagacataagacctcagacagatggc
tgcaatggcttgagatataatctaactgctgacattattgaatccatcttcagaacatac
cctgcagtgaaacagaagtatagtgagaatgtgcctcataacctgacggagaaggagttc
tggaccagctttttccagtcccattattttcacagagaccgcatcaacacaggaacacag
gatattttctctgagtgtgccaagcaggatgagatggggttaaagttgatggtgactcaa
ggagtgaagaatcctctggtcgacctcctgtcgttagaggataaatcattagatgagggt
tatggagttagcacaacactaccctcaacttccaatgcaaaccggacggtgaaggagagc
agcaactctgccattataaagcgcttcaaccaccacagtgccatggtgctggcagcaggc
tcgcgaaagggggaaacaccaacagaccaagcgagtgagacaagcagcacggatggaaac
tccagggattcggacttctttcaacctcctgtaaagaaggttaaattacaagaagcgata
gaatatgatgatctccaaggggagaacagaccaaaaacagtcccgctgaaccttaagaag
tctgacaggtacgctcatggtccagtgccacttcagtcccaacaatatacaactagccag
gaaatcatcaactctgtcaactacatccgccatgaaatggccaattacaaacccaacctc
actcaggtgttgtccagcacagcagcgacttctgccatcattgcactttctccaggtggc
gtcctcatgcaggcaggaacacagcaagccataaatcagatgatacccactgatgttcaa
ggagagttgaagcatctctacgtagctgctggagagctattaagacacttctggtcctgt
tttcctgtaaacactccatttttggaagagaaggtgacaaaaatgaagacaaacctggag
agatttcagatgaccaagcttcgaccttttcaggagaagattcagcgccagtacttaagt
acaaatctcacagggcacttggaggagatgctgcagacggcctacaacaagttccacgcc
tggcaaacccgtcggatgatgaggaaaacctga
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