Hippoglossus stenolepis (Pacific halibut): 118109516
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Entry
118109516 CDS
T08308
Symbol
roraa
Name
(RefSeq) nuclear receptor ROR-alpha A isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hsp03000
]
118109516 (roraa)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
hsp03310
]
118109516 (roraa)
Transcription factors [BR:
hsp03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
118109516 (roraa)
Nuclear receptors [BR:
hsp03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
118109516 (roraa)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
118109516
NCBI-ProteinID:
XP_035012561
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Position
5:complement(15040319..15222156)
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AA seq
519 aa
AA seq
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MESPPDPASDPGNSASEPATPVRETPVNLETLRKADHPAPVRRQTCSSTNRGISVTKKTH
TSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKNCLIDRTSRNR
CQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRLQQQQREHQQQPGEAEPLTP
SYGLSANGLTELHDDLSGYMDGHTPDGTKPDSAVSSFYLDIQPSPDQSGLDINGIKPEPI
CDFAPGSGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHMETCQYLREELQQMTWQAFL
QEEVESYQSKPREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVV
FVRMCRAFDSQNNTVYFDGKYAGPDVFKSLGCDDLISSVFEFGKNLCSMHLSEDEIALFS
AFVLMSADRSWLQEKVKVEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTLRALCSRH
TEKLTAFKAIYPDIVRAHFPPLYKELFGSDFEQSMPVDG
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggagtccccgccagatccagcgagcgatccgggcaacagcgcctcggagccggctacc
ccggtcagggaaaccccggtaaacctggagacgctccggaaagcggaccatccagccccg
gttcgaagacagacctgctccagcaccaacagaggtatctcagtaacaaagaagacacac
acctctcaaatcgaaataattccctgcaagatctgtggagacaaatcatcaggcatccat
tacggtgtgataacatgtgaaggctgtaagggcttcttcaggaggagtcagcagagcaat
gcagcctactcctgcccccgtcagaagaactgcctgatcgaccgcaccagccgcaaccgc
tgccagcactgccggctgcagaagtgcctggcggtgggcatgtcacgggatgcggtgaag
tttggccgcatgtcgaagaagcagcgagacagcctgtacgctgaggtccagaagcaccgg
ctgcagcagcaacagcgtgaacaccaacagcagcctggcgaggcggagccactcacacct
agctacggcctctcagccaatggcctcacggagctccatgacgacctcagcggctacatg
gacggtcacacccccgatggcaccaaaccagactccgcggtcagcagcttctacctggac
atccagccgtcccctgaccagtcaggcctggacatcaacggcatcaagccggagcccatc
tgcgacttcgcccccggctctggcttcttcccttactgctccttcaccaacggagaaaca
tcccccaccgtgtccatggctgaactagagcacctggcccagaacatctccaagtcacac
atggagacatgtcagtacctgagggaggagctgcagcagatgacctggcaggccttcctg
caagaggaggtggagagctaccagagcaagccccgggaagtcatgtggcagctgtgtgct
atcaaaataacagaggccattcagtatgtggtggagttcgccaagcgcatcgacggcttc
atggagctgtgtcagaacgatcagatagtgctgctgaaagcaggctctttggaagtcgtg
tttgtcagaatgtgccgtgcctttgactcgcaaaacaacaccgtctatttcgatggaaaa
tatgccggacctgatgtgttcaagtcattaggctgtgacgacttgatcagctccgtcttc
gagtttgggaaaaacttgtgttctatgcacctgtctgaggatgagatcgccctgttctcc
gcctttgtgttgatgtctgctgatcggtcctggctccaggagaaagtaaaggtggagaaa
ctccagcagaagatccagctggccctccagcatgtcctgcagaagaaccacagagaggat
ggaattcttacaaagttgatatgcaaagtgtcgacactgcgagcgctgtgcagtaggcat
acagagaagcttacagctttcaaagcaatatacccagacattgtgcgtgcccacttcccc
cccttatacaaggagttgttcggatcagactttgagcagtccatgcccgttgacgggtag
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