Hippoglossus stenolepis (Pacific halibut): 118109641
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Entry
118109641 CDS
T08308
Symbol
amfra
Name
(RefSeq) autocrine motility factor receptor a isoform X1
KO
K10636
E3 ubiquitin-protein ligase AMFR [EC:
2.3.2.36
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04137
Mitophagy - animal
hsp04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
118109641 (amfra)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
118109641 (amfra)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
hsp04121
]
118109641 (amfra)
Enzymes [BR:
hsp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.36 RING-type E3 ubiquitin transferase (cysteine targeting)
118109641 (amfra)
Ubiquitin system [BR:
hsp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
118109641 (amfra)
Multi subunit type E3
ERAD complex
118109641 (amfra)
LMBR1L-GP78-UBAC2 complex
118109641 (amfra)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
zf-C3HC4_2
G2BR
CUE
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_3
zf-rbx1
zf-RING_11
zf-ANAPC11
zf-RING_5
zf-RING_16
zf-C3HC4_4
Prok-RING_4
zf_RING_Vps8
zf-RING_Vps41
zf_RING_Vps8_fungal
FANCL_C
Motif
Other DBs
NCBI-GeneID:
118109641
NCBI-ProteinID:
XP_035012815
LinkDB
All DBs
Position
5:28011416..28020743
Genome browser
AA seq
629 aa
AA seq
DB search
MPLWFLERFPWPSLQTYTALSAALLTGTVLSVCSSGSRPQSSPEEESSPPGLSSRDSRVL
RGGGQELDSGFGDMAADVLMFLRTDSVLVWVVLNSACCVLLLVARLVQWVVFGPLRVSEK
QQLKDKFWNFIFYKFIFVFGVLNVQTVDEVVMWWLWFSVLVFLHLLVQLCRDRFEYLSFS
PATPLSSHARVLLLLVLLMLSCGALASLCARGRHAAGFMAAECMLVTVRTAHVMFRYSIH
LWDVNQEGGWENKSSYVYYTDLLMELLLLGLDLLHHIHMLIFSNIWLSMASLVIFMQLRS
LVQEVQKRIRRHHNYLRVLRNMETRFPVASADEVAAGNDDCAICWDVMSSARKLPCGHLF
HSSCLRSWLEQDTSCPTCRMSLDIGEGGEVPVETREAVPDNMAAGAGGDTRPHLNQLNHF
FHFDGSRIASWLPSFSVEVMATTNFLGIAPTTPSQINAMGQQIQEMFPHVPVQLILHDLE
ITGSLEVTTDNILEGRVQAAALPLVMEHPLIQVTPPPEDDGGGSGESEQDDESESLEDEE
EEGEAAEREEDVEDEEKKELRFCPSAEERQQLLLQRKEELLQRARRKYSVHQSNDFVTRN
IGSNTGNTGSSSSDPVNLQQAAATCDFSQ
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgcctctctggttcctggagcggttcccctggcccagtctgcagacctacacggcgctg
agtgctgccttgctcaccggcaccgtcctctccgtctgctcctccggctcccgccctcag
tccagcccggaggaggagagcagccccccggggctcagctccagggacagccgcgtcctc
aggggcgggggacaggagctggactcgggctttggagacatggctgcagatgtgctgatg
ttcctgcggacagacagtgtcctggtctgggtggtgctgaactctgcctgctgtgtcctg
ctgctcgttgccaggctcgtccagtgggtggtgttcgggcccctgcgtgtcagtgagaaa
cagcaactgaaggacaagttctggaacttcatcttttacaagttcatcttcgtgttcggc
gtcctgaacgtccagacggtggacgaggtggtgatgtggtggctctggttctcggtcctg
gtcttcctccatctcctggtgcagctctgcagggaccgatttgaatatctgtccttctct
ccagccacccccctgtccagtcatgctcgggtgctgctgctgctcgtcctgctcatgttg
agctgcggggctctggcctcgctgtgcgctcggggccgacacgccgctggcttcatggca
gcggagtgcatgttggtgactgtcaggacggcacacgtcatgtttcgctactcaatccac
ctgtgggacgtgaaccaggagggcggctgggagaacaagtcctcctacgtgtactacacc
gacctgctgatggagctgctcttactgggcctcgacctgctgcatcacatccacatgctg
atcttcagtaacatctggttgtctatggcgagtctggtcatcttcatgcagctccgctcc
ctcgttcaggaggttcagaagagaatccgccgccaccacaactacctgcgggtgctgcgc
aacatggagaccaggtttcctgtggcgtctgcagacgaagtggcggccggtaacgacgac
tgcgccatctgctgggacgtaatgagttcagctcggaaattgccctgcggccacctcttc
cacagctcatgtctgcgctcgtggctggagcaggacacatcgtgtccaacatgtcggatg
tccctggacattggcgaaggaggtgaagttcctgtggagaccagagaggccgtcccagac
aacatggctgctggagccggaggcgacactcggccgcacctcaaccagctcaaccacttc
tttcactttgacgggtctcgtatcgccagctggctgcccagtttctctgtggaggtcatg
gccacaaccaactttctgggcatcgcaccgaccaccccgtctcagatcaacgccatgggt
cagcagatccaggagatgttccctcatgttcccgtccagctcatcctgcacgacctggag
atcactggatcactggaggtcaccacggacaatatcctggagggacgagtccaggccgcc
gccctgccgctggttatggagcacccgctcatacaggtgactcctccccctgaagacgac
ggcggaggcagcggcgagtcggagcaggacgacgagagtgagagcctggaggacgaggaa
gaagagggtgaggctgcagagagagaggaggacgtggaggatgaggagaagaaggagtta
cggttttgtccgtcggccgaggagcgacagcagctgctgctgcagaggaaggaggagctg
ctgcagcgagcacgaaggaaatattctgtacatcagtcaaacgactttgtgaccaggaac
atcgggtccaacacaggaaacacaggctcctcgagctccgaccctgtgaacctgcaacag
gcagcagcaacgtgtgacttcagccaatga
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