Hippoglossus stenolepis (Pacific halibut): 118109677
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Entry
118109677 CDS
T08308
Symbol
lingo1a
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hsp04131
]
118109677 (lingo1a)
Membrane trafficking [BR:
hsp04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
118109677 (lingo1a)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
I-set
LRR_1
Ig_3
ig
Ig_2
LRR_9
LRR_Zer-1
LRRNT
Ig_C17orf99
Motif
Other DBs
NCBI-GeneID:
118109677
NCBI-ProteinID:
XP_035012873
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Position
5:complement(7249960..7387700)
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AA seq
615 aa
AA seq
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MVAREATGHSYLVACWQPILILMLGTVLSGSTTGCPSRCECNVQERSVMCHRKKLMTVPE
GIPAETRLLDLSKNRIRTINPDEFVNFANLEHLELSENTISTIEPGAFNNLYGLRTLGLR
SNKLKLIQLGVFTGLSNLTQLDISENKIVILLDYMFQDLYNLRSLEVGDNDLVFISHRAF
HGLSSLEHLSLEKCNLSSVPTEAFTHLHSLITLRLRHLNINVIRDYSFKRLYRLKVLEIA
NWPYLDTMTPNCLYGLNLTSLTIANANLTTIPYVALRHLVYLRFLNLSYNPIHTIEGNKL
HDLLRLQEFHLVGGRLAMIEPYSFRGLNYLKILNVSGNSLSTLEESAFHSVGNLETLALY
DNPLACDCRLLWVFRRRWRLNFNRQQPTCASPEFVQGKEFKDFPDVLQPNYFTCRKSRIR
DRKPQQKFVDEGAIVHFACQADGDPAPVIMWLSPQKKFITSKTIGRLSVLPDGTLEVRYA
QIQDNGTYVCIASNAGGNDTSLSHLHIHSYSPDWPHQPNKTFAFISNQPTETGANGTRAN
VPFPFDIKTLIIATTMGFISFLGVVLFCLVLLFLWSRGKGNTKHNIEIEYVPRKSDAGMS
SSTVDAPRKFNMKMI
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggtggccagggaagcgaccgggcacagctacctggtggcttgctggcagcccattctg
atcctgatgctgggcactgtgctgtctggctccaccacaggctgtccatcccgctgtgag
tgcaatgttcaagagcgctctgtgatgtgccaccgcaagaagctcatgacagttcctgag
ggcatccctgcagaaacaagactgctggatctgagcaagaaccgcattagaaccattaac
ccagatgagtttgtcaactttgccaacctcgaacacctggagctcagtgaaaacacgatt
tccactattgaacccggagcgttcaacaacctttacggcttgcggacattggggctgcgt
agcaacaagcttaagctgatccagctcggtgtcttcacaggcctcagcaatctcacacag
ctggacataagtgagaacaaaatcgtcatcctgttggactatatgttccaggatttgtac
aaccttcgatctttagaggtaggtgataacgatctggttttcatctcccaccgggctttt
catggcctaagtagccttgagcacttgagtcttgagaagtgcaacttgtcctctgtgcca
acagaggcgtttactcacctccacagtttgatcactctcaggctgcgtcacctcaatatc
aatgtgatacgggattactcctttaaaaggctctatcggctgaaagtgctggaaatagct
aactggccatacctggataccatgacccctaattgcctgtatggattaaatctcacctcc
ctgacaattgcaaatgccaacctgaccacaatcccttatgtcgccctgcggcacctggtt
tatttgcgctttctcaatctttcatataaccctatccataccattgaggggaataagctc
catgatcttctgcgtctgcaggagttccacctggtgggaggaagactggcaatgattgag
ccctactcgttccgtggtctgaactacctgaagattctaaatgtgtctgggaactctctt
agcactttagaggagtctgcttttcattcagttggcaacctggaaaccctcgccttgtat
gataatcccctggcctgtgactgccgactgttatgggttttcagacgacgctggcgactg
aacttcaacaggcaacagccgacctgtgcctctcccgagtttgtccaaggcaaagagttc
aaagacttcccagatgttctgcagccgaactacttcacatgtcgcaaatcaaggattaga
gatcgcaagccccagcagaaatttgttgacgagggagccattgttcatttcgcttgtcaa
gcagatggagatcctgctccagtgataatgtggctatccccacagaaaaagttcatcacc
agcaagacaatcggaaggctctccgtgctgccagacggtacccttgaagtgcgctatgcc
cagattcaagacaatggaacatatgtgtgtatagctagcaacgcaggcggaaatgacacc
tccctttctcacctgcatattcatagctactcgcccgactggccacaccagcccaataag
acgtttgccttcatttccaaccagcccacagaaacaggtgctaatggcacaagagccaac
gtcccattcccgtttgatataaagacgttgatcattgcaaccacaatgggcttcatctct
tttcttggtgttgtcttgttttgtctggtactgctcttcctttggagcagaggaaaaggc
aacactaaacacaatatcgagatcgagtatgtgccacggaaatcagacgctggcatgagc
agcagcacagtggatgctcctcgcaagttcaacatgaaaatgatttaa
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