Hippoglossus stenolepis (Pacific halibut): 118109733
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Entry
118109733 CDS
T08308
Symbol
lsp1a
Name
(RefSeq) non-muscle caldesmon
KO
K12327
caldesmon
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04270
Vascular smooth muscle contraction
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
118109733 (lsp1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
hsp04812
]
118109733 (lsp1a)
Cytoskeleton proteins [BR:
hsp04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Others
118109733 (lsp1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Caldesmon
Motif
Other DBs
NCBI-GeneID:
118109733
NCBI-ProteinID:
XP_035012969
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Position
5:6170123..6205526
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AA seq
564 aa
AA seq
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MSNALLRRNSSKQGLQNLMRLTAQRSIEDAEEVERERRRRARESFRRGSSGSTPGESSPE
NETQTEEKMFDSDFKPSSSPSLEEDEGFSDWTQRRELRRQQRLQELGQGGQEDEEENTIN
KAPSVKTVQASATSSSRLQQQEQEGMEKARMEVERTKEREEVAVRAERARREKDGQDEEK
RKREEVMTRRREDVQRPKTEMEKRKEVKVSYTSKVFLQQEPKHNGDATNEEVVSHINSKT
KRSTRRATEPEEAEAILETEQRLEKIRRSLQVKESQDLEQLRHGQAEAEQELEELKRRRE
ERRRVRQEEEHRREEEEQQRLAKEEEERRRMKDDIERRRMEAAERMKSLSTSSVDGEEMF
SPFSPKAPTHKITERTESLNRSLKKSNSFKKTQPLILMAKIDDKLEQYAHAVENSQEARA
VKASLTDLPSSPEVVASKKNLFEAGEAWSQSPTKGATSKDTDGLKVGVANLITQWVKGPS
DGSRQSSSRATDVKPGDVMQKKNMWEIIGDSSEGPGQKANKGSPAGKKYKFIVTGHGKYN
KIPMDDKSGGEFMNKQSDLCHGDY
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacgcactgctgaggagaaactccagcaaacagggtttgcaaaacctgatgagg
ctgacggctcagaggagcatcgaggacgcggaggaggtggagagggaacgtcgtcgtaga
gctcgagagtctttccgacggggcagcagtggttcaacacccggagagtcctctccagag
aacgagacgcagacagaggagaagatgttcgatagcgacttcaagcccagcagctctccc
tctctggaggaggacgaaggcttcagcgactggactcagcgcagagagcttcggaggcag
cagcgcctgcaggagctcggccagggaggccaggaggacgaggaggagaacacgataaac
aaagctccatccgtaaagaccgtccaggcctcggccacatcctccagccgactccagcaa
caggagcaggaagggatggaaaaggccaggatggaggtggagaggacgaaggagcgtgag
gaggtggctgttcgagccgagagggcgaggagggagaaagacggacaggacgaggagaag
aggaagagggaggaggtgatgactaggagaagggaggatgtgcaaaggccaaaaacagaa
atggagaaaagaaaagaagttaaagtctcctacacatcgaaggttttccttcaacaggag
ccgaaacacaatggagacgcaacaaatgaggaagtggtgtcacacatcaacagcaaaaca
aaaagatctactaggagagctacagagccggaggaggcggaggccatcctggagacggag
cagcgtctggagaagatccgacggagcctccaggtaaaggagagccaggacctggagcag
ctgagacacggacaggccgaggccgagcaggagctggaggagctgaagaggagaagggag
gagagacgccgagtcaggcaagaagaggagcaccggagggaggaggaggagcagcaaagg
ctggctaaagaggaggaggagcgtagacgtatgaaggacgacatcgagaggaggaggatg
gaggcagcagagaggatgaagagcctgagcacgtccagcgtggacggggaagagatgttc
agtcccttcagtccaaaagctcccacacacaagatcacagagagaacagagtccctgaac
cgctcactgaagaaaagtaacagctttaagaagacgcagcctctcatactgatggccaag
atcgacgacaagctggagcagtacgcccacgccgtggagaactcacaagaggcgcgagca
gtgaaggcatctctgactgacctgcccagctcacctgaggtcgtcgcctccaagaagaac
ctgtttgaggccggagaggcctggagccagagtcccaccaagggagcaactagcaaggac
acggatggtctgaaggtgggcgtggccaacctgatcacccagtgggtcaaaggcccctct
gatggcagcagacagtcgtccagcagagcaacagatgtgaagcctggagacgtgatgcag
aagaagaacatgtgggagatcatcggagattcgtcagaaggaccgggtcaaaaagccaat
aagggatcaccagctggtaaaaagtataaatttatcgtcactggtcacggcaaatataac
aagatccccatggacgacaagagtggaggagaatttatgaacaaacagtctgatttgtgt
catggagattactga
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