Hippoglossus stenolepis (Pacific halibut): 118109741
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Entry
118109741 CDS
T08308
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118109741 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsp03019
]
118109741 (edc4)
Messenger RNA biogenesis [BR:
hsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118109741 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
118109741 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_Prp19
Beta-prop_EDC4L
WDR55
PIN_8
EIF3I
Nrap_D3
Motif
Other DBs
NCBI-GeneID:
118109741
NCBI-ProteinID:
XP_035012985
LinkDB
All DBs
Position
5:complement(25773993..25796602)
Genome browser
AA seq
1396 aa
AA seq
DB search
MASGSDIDIEGATQHLRDILKLDRPSNSADAQSSGAQRKPSFNGELNGLLGAVGLLGSTD
RSTMSDSTAPISTDLCSTQESQIICLSGDDGSTCISITSSNVEIVASQDSSINSKARGSN
KVKIQPVAKYDWEHKYYYGRLIAVSNSFLAYAIRGANNHAMIRVLSLSFAERSLLKGFTG
AVTDLAFAHLDSSLLGCVDEAGNLMVWQLTCTGNKILDQIVIHIRRPDETPLNSHRRLIW
CPFILDDNEENQDDASQTLALLHEDRAEVWDLEVLRANHSSWPVDASDVKEGLITVKGHT
QRVSEGALSPDGTVLATASHDGYIKFWQIYIEGRQDKPSSPFSRCLHELQPHGGRPLSCL
LFCDNHKRQDPEVPFWRFLITGADQNQELKLWCTVSWTCLQTIRFSPDPFNSSALPSLKA
SLDLAAEYLILTDVQRKVLYVMELRQDMEKGKANFTAVSEFLLTHPVLSFGVRDVAHSRL
QHTEVLPAEEDSESMTTEGVQGPTESKSGIQIKLYCVHTKTLQDVQIWFQPNARSSSALF
LPHSDSQDGFAAFSDHLTDQSSDKESGSGSQNDLRKIPSLPAPADFLSNSVSGSGPMPKL
MTPDAFMTPSTSVPASPGSSASSLTIVTATSSNSDSTNRALDDHSHSPNRAESSSSSLTL
SASTSSPRAASAVLLPGLENLQALASPSGLLSLDNSQIMDSPILQNLASPTRARSPDVIS
SASTAMSQDMPEIASQTLQLQRGLMSSLEPLPLSALQTDSMASAASALHLLTSPRTANNS
LLALELGGADGPVSGAIESEPRLSHTPSLLENALSQENPGVGGGSSDGNVSHTPWPAAPD
ITRETRNSLRDNGLGDCSREESKVHMNSPYHRRSYHLSQNDSQDTGAEQSDPDDEVASLA
SSSGNCGSRSSHRISVKDWKTSPRGSPKLKRKIKKDDGEMAQSRQMDSAQMNVEVQEELL
MLLRSQQRELTELRGQIETMQSSIMAQVDHVLSNHQEQEQRRLERVLAESQNHQQQLQEQ
LSQHLSHALTSALTNRMDKVLRDEMKKTLPQTISKSLEPVTGQLNNTIAAKLTAVEVTLK
DNVSKVVKSKNTTDAIGRAAAEAMQGPIQAAYKDAFQSIVLPVFERGCQSMFQQINDSFK
QGTQDYIQQLETHMKNRKQREQEARDPIVGQLQQMIDSFQTSSDQLANNITANVRGEVQH
QIQMMVGNLQETILSHVQRIVKGEVGLAMKEQQAVVTSSIMQAMRSAAGTPVPTAHLDYQ
TQQANILQLLQQGQLNQAFQQALSATDLNLVLYVCETIDSQQVFGQHPCPLSQPVLLSLI
QQLSSNLSTRSELKISYLEDAVMNLDHGDPLTRDHMSSVLAQVRPKLFAFLQQDPHSLLS
KRARRLMMMLQGLVNH
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccggctcggatatagacatcgagggggcgacccagcacctccgggacatcctg
aagctcgaccgtcccagcaacagcgccgatgcacaatcaagtggtgctcagaggaagcct
tcttttaatggagagctgaatgggttgctgggggcagtcggccttctgggaagcactgat
aggtccaccatgtcagactctaccgcacccatctccacagacctctgcagcacccaggag
agtcagataatctgcctctccggtgatgatggctccacctgcatctccatcacatccagc
aatgtggagattgtggcaagtcaagactccagcatcaacagcaaggctcggggcagcaac
aaggtgaaaattcaaccggttgccaagtacgactgggaacacaagtattattatggcaga
ctgatagctgtgtccaactccttcctcgcttatgccatcagaggagccaacaaccatgca
atgattcgtgtcctgagtctgtcttttgctgagcgttccctgctgaagggattcacaggg
gccgtcacagatctggcttttgcccacctcgactcctctctgttgggttgtgtagatgag
gcgggcaacctaatggtctggcaactcacctgcactggaaacaagattctagatcagata
gtgattcatataagacggccagatgaaactcccctgaactcccacagacgcctcatctgg
tgtccgttcattctggatgacaacgaggagaatcaggacgacgccagccagaccctggcc
cttctacatgaagacagggctgaggtgtgggacctggaagtcttgagagccaaccacagc
agttggcctgtcgatgcctcagatgtcaaggaaggcctcatcacagtgaagggacatact
cagcgagtcagtgaaggagccttgtctccagacggaaccgtgttagccacagccagccat
gatggatacatcaagttctggcagatatacatagaaggacgacaggacaagcccagctct
ccgttttccagatgtctgcacgaattgcaacctcacggaggacgtcccctctcctgcctt
cttttctgtgacaaccacaagagacaggacccagaggttcctttctggcgtttcctcata
acgggagctgatcagaaccaggagttgaagctgtggtgcactgtttcctggacctgttta
cagaccatcaggttctctccagatccgttcaactcctcagctctgccaagtttgaaggcc
agtctggacctcgctgctgagtatctcatcctcactgatgtacagaggaaggttttgtat
gtgatggagctgcggcaggacatggagaaagggaaggctaatttcacagctgtgtcagag
tttctgctgactcaccctgtgctcagcttcggagtccgggacgtcgcccacagccgactg
caacacactgaggtcctccctgcagaggaggacagtgagagcatgactacagagggcgtt
caaggacccacagagtccaagtctggaatccagattaaactctactgtgttcacactaag
actctgcaggatgtccagatctggtttcaacccaacgcacgttccagttctgcactgttc
ctgcctcattctgattctcaggatggttttgctgctttttcggaccatctcactgaccag
agttctgacaaagagtcaggaagtggatcccagaacgacctgcggaagatcccatctcta
cccgctcctgctgacttcctgtccaactctgtctctggcagtgggccgatgcccaagctg
atgactcctgatgccttcatgacaccaagcacttcggtaccagcatcacccggcagcagc
gccagcagtctgaccatcgtaacggcaaccagcagcaactctgactcgactaacagagct
ctagacgatcacagtcacagtcctaacagagctgagagcagcagcagtagtctcacactc
tctgcctccaccagcagcccaagagctgcttccgctgtactgctgccaggactggagaac
ctacaggctttggcgtcccctagtggtcttctttcacttgacaactcccagatcatggac
tcgccaatcctgcaaaatctggcctctccgaccagggcccgctcccctgatgtcatctcc
tccgcctccacggccatgtcccaggacatgccggagatcgcatcccagacgctgcagctt
cagcgtggactcatgtccagcttggagcctttaccactttctgcgcttcagacagacagc
atggcatctgctgcctctgctctgcacctgctcacctctccacgcacagccaacaacagt
cttttagccctggaacttggaggtgcagatgggccagtaagtggggctatagagtcagag
cctagactcagccacactccctctttgctggagaatgccttatcgcaggagaaccctggg
gtaggaggagggtcctccgatggaaacgttagccacacaccttggccagctgcacccgac
atcaccagagaaaccaggaacagtctcagggacaacggcctgggagactgttcaagggaa
gagtcaaaggtgcacatgaactcaccttaccatcgacgctcgtatcacctctcacagaac
gacagtcaggacaccggtgcagagcagagcgaccctgatgatgaggtggccagcctggcg
tcgtcttcaggaaactgtggctctcgctcctctcacaggatctctgtgaaggactggaag
acgtcaccacgaggttcaccaaaactgaagaggaagatcaagaaggatgacggtgaaatg
gctcagtccaggcaaatggactcagctcagatgaatgtagaagttcaggaggagctgttg
atgctcctgcgtagccagcagagggagctgactgagctgcgtggacagatcgaaaccatg
cagagctccataatggcccaggtcgatcatgtcctgtccaaccaccaggagcaagaacag
cgcagactggaacgagttctggccgagagtcagaatcaccagcagcagcttcaggagcag
ctcagccagcatctcagccacgccctcacctccgccctcaccaacagaatggacaaagtg
ctacgggatgaaatgaagaaaaccctcccacaaacaatttcaaagagcctggagcctgtg
acaggtcagctgaacaacacaattgctgccaagctgaccgctgtggaggtcaccctgaag
gacaacgtcagcaaggtggtcaaatccaagaacacgacggatgcaattggtcgagcggca
gctgaagcgatgcaggggccaatccaggccgcatacaaagatgccttccagagcatcgtg
ctgcccgtgtttgagagaggctgccagtccatgtttcagcaaatcaacgacagcttcaaa
caaggaacccaagactacatccagcagctggagactcacatgaagaacagaaagcagaga
gagcaggaggcccgagaccccatcgtgggccagctccaacagatgattgacagcttccaa
acctccagtgaccaactggccaataacatcacagctaacgtccgaggcgaagtccagcac
cagatccagatgatggtgggaaatttgcaggagactatcctcagtcacgttcagcggatt
gttaaaggggaggtgggcctggccatgaaggagcagcaggctgtggtcacctccagcatc
atgcaggcgatgaggtcggctgccggcacgcccgtccccacagcacacctcgactaccag
acacagcaggccaacatcctgcagctcctccagcagggccagctcaaccaggctttccag
caggctctgtcagccacagatctgaacctggtgttgtatgtgtgtgagaccatcgactct
cagcaggtgtttggtcagcacccctgccccctgagccagcccgtcctgctgtccctcatc
cagcagctctcctccaacctctccacccgctctgagctcaaaatcagttacctggaggac
gcggtgatgaatctggaccacggcgacccgctgaccagagaccacatgtcctccgtgttg
gcccaggtcagacccaaactctttgcgttcctgcagcaggacccccacagcctgctcagc
aagagggcgcggcgcctgatgatgatgctgcagggtctcgtcaaccactag
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integrated database retrieval system
