Hippoglossus stenolepis (Pacific halibut): 118109803
Help
Entry
118109803 CDS
T08308
Symbol
sf3b3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118109803 (sf3b3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsp03021
]
118109803 (sf3b3)
03041 Spliceosome [BR:
hsp03041
]
118109803 (sf3b3)
03036 Chromosome and associated proteins [BR:
hsp03036
]
118109803 (sf3b3)
Transcription machinery [BR:
hsp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
118109803 (sf3b3)
Spliceosome [BR:
hsp03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
118109803 (sf3b3)
Complex B
118109803 (sf3b3)
Complex C
U2 SnRNP specific factors
118109803 (sf3b3)
Chromosome and associated proteins [BR:
hsp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
118109803 (sf3b3)
TFTC complex
118109803 (sf3b3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_EML
Motif
Other DBs
NCBI-GeneID:
118109803
NCBI-ProteinID:
XP_035013087
LinkDB
All DBs
Position
5:complement(25215302..25237724)
Genome browser
AA seq
1217 aa
AA seq
DB search
MFLYNITLQRATGITHAIHGNFSGTKLQEIVVSRGKILEIIRPDANTGKVHTLLTVEVFG
IIRSLMAFRLTGGTKDYIVIGSDSGRIVILEYHPSKNMFEKIHQETFGKSGCRRIVPGQF
LAVDPKGRAVMIGAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEALEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKVTLETDEEMVTEIRLKYFDTIPVATAMCVLKTGFLFVSSEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQENLSPIMSCQIADLANEDT
PQLYVACGRGPRSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVRCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPTDCLQPLSMQALPAQPESLCIVEMGGVEKQDELGEKGTI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQCTPRKFVIHPESNNLIVIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPEAIFGSPKAGAGQWASIVRLINPIQGTTLDQVQLEQNEAAFSVAVCRFPNTG
DDWYVLVGVARDMILNPRSAAGGFIYTYRLTGGGEKLEFVHKTPVEDVPLAIAPFQGRIL
VGVGKLLRIYDLGKKKLLRKCENKHVPNLVSSIHTIGQRVIVTDVQESLFWVRYRRNENQ
LIIFADDTYPRWVTTACLLDYDTMASADKFGNISIVRLPPNTSDDVDEDPTGNKALWDRG
LLNGASQKAEVIVNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHLEMHMRSEFPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMDPHKQKSVAEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgttcctgtacaacatcaccctgcagcgcgccactggcatcacacatgccatccatgga
aacttctcaggaaccaagctgcaggagattgttgtttccaggggaaagatcttggaaata
atacgtccagatgccaacacgggaaaggtgcacactctgctcacagtggaggtgtttggc
atcataaggtctctgatggcattcagactcacaggaggaaccaaagattacattgttatc
ggaagtgacagtggtcgcattgtcatcctggaatatcatccatcaaaaaacatgtttgag
aagatccaccaggaaacattcgggaagagcggatgtcggcgtattgttcccggacagttt
ctggctgtcgacccaaagggcagagccgttatgataggagcaatcgagaaacagaagctg
gtttatattctgaacagagatgcagcagcgaggctgaccatctcctcaccactggaagca
cacaaagcgaacacactggtgtaccacgtagtcggagtcgacgttggctttgagaatccc
atgtttgcgtgcttagaaatggactatgaggaagctgacaacgacccaacaggagaagct
gctgccaacacgcaacagactctcaccttttacgagctggaccttggcttaaatcacgtg
gtccgcaagtacagcgaggctttggaagagcacggaaacttcctcatcaccgttcccggt
ggttccgatgggccgagtggagttctgatctgctcagaaaactacatcacttacaagaat
ttcggagaccagcctgacattcgctgtcctattccacgacgcaggaatgacttggatgac
ccggagcgtggcatgatcttcgtctgctcagccacacacaagaccaagtctatgttcttc
ttcctggcccagacggagcagggagacatcttcaaggttactctggagacagatgaagaa
atggtcacagaaatcaggctgaagtactttgacacgatccccgtggcaacagccatgtgt
gttctgaagactggcttcttgttcgtttcttcagagtttggaaaccattacctttaccag
atcgctcacctgggtgatgatgatgaagaacctgagttctcatctgcgatgccactggag
gagggagacaccttcttcttccagcctcgtcccctcaagaaccttgtgctggtggatgaa
caggagaacttatcacccatcatgtcctgtcagattgctgatttggccaatgaagataca
cctcagctgtatgtggcctgcggacgaggacccaggtctactctcagggtccttcgtcac
ggactggaggtttcagagatggctgtgtccgagctgcccggtaaccccaatgccgtgtgg
accgtgcgtagacacgtggaagacgagtttgatgcctacatcattgtgtctttcgtcaac
gccactctggttctgtccatcggagagactgtggaggaagtgacagattctgggtttctg
ggaacaacccccaccctgtcctgctcactgcttggtgaagacgcgttggtgcaggtttac
ccagatggcatccgccacattcgagcagacaagcgtgtgaatgagtggaagactcctggc
aagaaaaccattgtccgctgcgcagtgaaccagcggcaggtggtgatcgccctcactgga
ggggagctggtctactttgagatggacccgtctggccagctgaacgagtacacagagcgg
aaagagatgtccgcagatgtggtttgcatgagcctggcaaacgttccacctggtgagcag
cgctcccggttcctggcggttggactggtcgacaacactgttcgaatcatctccctggac
cctacggactgtctgcagccgttgagtatgcaggcccttcccgcccagccggagagtctc
tgtatcgtagagatgggaggtgtcgagaaacaagatgagcttggagaaaagggaaccatt
ggattcctctacctcaacattggacttcagaacggtgtgctactgagaactgttctggac
ccagtcaccggcgacctgtcagatacacgaacacgctacctggggtcacgacctgtcaaa
ctcttcagagtcaggatgcagggacaggaagctgtgctggcaatgtccagtcgctcttgg
ctcagctactcgtaccagtctcgcttccatctcacccctctgtcatatgagactctggag
tacgcctctggctttgcctccgagcaatgtccagaaggtatagtggccatttccaccaac
acactgagaattttggctttggagaagttgggagccgtcttcaatcaggtggcctttcct
ctgcagtgcactcccagaaagtttgtgatccacccagagagcaataacctcattgtgatc
gagactgaccacaacgcctacacggaggcgaccaaagctcagcggaagcaacagatggct
gaggagatggtggaggctgctggggaggatgaaagggaactggccgctgagatggccgct
gccttcctcaacgagaatctcccagaagccatcttcggttcgcctaaagctggagccggg
cagtgggcctcaatcgtgcgactgatcaaccccatacagggcacaacgttggaccaggtg
cagctggaacagaacgaagcagcgttcagtgttgcagtgtgtcgcttccccaacacggga
gatgactggtatgttctggttggtgtagccagagacatgattctcaaccccagatcggcg
gccggcggctttatctacacctacaggctcactggtggaggggagaagctggagtttgtg
cacaagaccccagtagaagatgtgcctttggccattgctccattccagggacgaattctg
gtgggagttggtaaactcctgagaatctatgacctcggcaaaaagaagctgctgcgcaag
tgtgaaaacaagcacgtacccaacctggtgtctagtatccacaccatcggccagcgagtg
attgtcaccgacgtccaggagagtctgttctgggttcggtatcgacgtaacgagaaccag
ctcattatcttcgccgatgacacgtatccacgctgggtgacgacggcctgtctccttgac
tatgacacaatggcatctgccgacaagtttgggaacatcagcatcgtgcgtcttcccccc
aacaccagcgacgacgtggatgaagaccccacaggaaacaaagccttatgggacagaggc
ctcctcaatggagcatcacagaaggctgaggtgatcgtcaactaccacgtaggtgagacg
gtgttgtctctgcagaaaaccactctgatccccggaggttcagagtccctggtgtacacc
acgctgtctggaggcatcggcatactggtcccattcacctcacatgaggatcatgacttt
ttccagcatttagagatgcacatgcgctcagagttccctccactctgcggtagagaccat
ctcagcttcagatcctactacttcccagtaaagaatgtgatcgatggagacctgtgcgag
cagtttaacagcatggaccctcacaagcagaagagtgtggcagaggagctggaccggacc
cccccagaggtctctaagaagctggaggatattcgcacacgttacgccttctaa
DBGET
integrated database retrieval system
