Hippoglossus stenolepis (Pacific halibut): 118109817
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Entry
118109817 CDS
T08308
Symbol
ctcf
Name
(RefSeq) transcriptional repressor CTCF
KO
K23195
transcriptional repressor CTCF
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hsp03000
]
118109817 (ctcf)
03036 Chromosome and associated proteins [BR:
hsp03036
]
118109817 (ctcf)
Transcription factors [BR:
hsp03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
118109817 (ctcf)
Chromosome and associated proteins [BR:
hsp03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
118109817 (ctcf)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_jaz
zf-C2H2_REST
Zf-C2H2_ZNF451_C
zf-C2H2_7th_ZNF462
zf-met
Zf-C2H2_ZNF451
zf-C2HE
zf-C2H2_6
zf-C2H2_15
zf-C2H2_ZN142
zf-WIZ
Motif
Other DBs
NCBI-GeneID:
118109817
NCBI-ProteinID:
XP_035013112
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Position
5:complement(1715718..1730750)
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AA seq
820 aa
AA seq
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MDAGPSEGVGEVEVHSQDAMVADLLQQAAEAGGVVEGQAGVVLEQGHGEEMVAAAQAQQQ
LMEAGVGVEDGPGVEMMVMDSLDPTLLQMKTEVIDAAVGGSSACSAHQATVTTVDQTQII
TLQVVNMEEQAALGLGELQLVQVPVSATTVEALQQGTFVDTTAMPKDGDPVICHTLPLPE
GFQVVKVGANGEVETVEQEEEGGQAHHEEEDEEVGNQLLEGEDGPIQTPNDDTNWAKDPD
YQPPSGMLKKTKKGKKSRLRYAEGDKDMDVSVYDFEEEQQEGLLSEVNAEKVVGNMKPPK
PTKIKKKGVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPHKCHLCGRAFRTVTLLRNHL
NTHTGTRPHKCTDCDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSH
TGERPFQCSLCSYASRDTYKLKRHMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTEN
VAKFHCPHCDTVIARKSDLGVHLRKQHSFIETGKKCRYCDAVFHERYALIQHQKSHKNEK
RFKCDMCDYCCRQERHMVMHRRTHTGEKPYACSQCEKTFRQKQLLDMHFKRYHDPNFIPT
AFVCPKCSKTFTRRNTMARHSENCSGEVEDAENGTPTPKRGRRGRKRKMRSRRDDDDDSE
EDPVDPDEEEEGEGEEESSLLQEDEDPESMELDQAPAAIPVPAPDEPPVKRKRGRPPKNA
PKPPTPIKSVRVAAKTTAAAAIIQVEDESTGAVENIIVKKEEGDTSAATPLEQGVALTVE
GVGLEGEGVETVELAVNEETAAAAANGDLTPEMILSMMDR
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atggatgcagggccatcagagggtgtaggggaggtggaggtccacagccaggacgccatg
gttgctgacctcctccagcaagctgcagaggccgggggcgtggtagagggacaagctgga
gtcgtccttgaacaaggtcatggggaagaaatggtagcagccgcccaggcccagcaacag
ctaatggaggccggggttggtgtagaagatggaccaggtgttgaaatgatggttatggac
tcactggaccccaccttgctgcagatgaagactgaggtgatagatgctgcagtggggggg
tcatcagcttgttctgctcaccaagcaactgtaacaacagtggaccagactcaaatcatc
acactacaggtggttaacatggaggagcaggcagctttaggcctgggagagctgcagctg
gtccaggtgccagtttctgccaccactgtggaggccctgcagcaaggcacctttgttgac
accactgcaatgccaaaggatggagacccagtcatttgccacaccctgccacttccggag
ggcttccaggtagttaaggttggtgctaatggggaggtggagacagtggagcaagaagag
gagggaggacaagcccaccatgaagaggaagatgaggaggtggggaaccagctgttggaa
ggggaagatggacccattcagactccaaatgatgacacaaactgggctaaagatccagac
tatcagcctccatctggaatgttgaaaaagaccaaaaagggaaaaaagagtcgcctgcgt
tacgctgaaggcgataaggatatggacgtcagtgtctatgactttgaagaagagcagcag
gagggccttctgtctgaggtcaatgctgagaaagtggtgggcaacatgaaaccacccaaa
cctacaaagatcaagaagaaaggagtgaagaagacatttcagtgtgaactgtgcagctac
acctgccctcgacgctccaacctggacagacacatgaagagccacacagatgagagacca
cataaatgtcatttgtgtggaagagcctttaggacggtcaccttgctaagaaaccatctc
aacacacacaccggaactcgtccacacaagtgcacagactgtgatatggcttttgtgact
agcggagagctggttcgtcatcgtcgctacaaacacacacatgagaaacccttcaaatgc
tccatgtgcgactatgccagtgtggaggtgagcaaactaaagcgtcacattcgatcccac
actggtgagcgtccattccagtgcagtctctgcagctacgccagtagagacacgtacaag
ctgaagagacacatgaggacacactcaggagagaaaccttatgagtgctacatctgccac
gcccgttttacccagagtggaaccatgaaaatgcacattctgcagaaacacacggaaaac
gtggcgaaattccactgtccacactgtgacacggttatcgcacggaagagtgacttgggt
gtccatcttcgaaagcagcactcgtttattgagactggaaagaagtgtcgttactgtgat
gcagttttccacgagcgctacgctctgatccagcaccagaagtcccataagaacgagaaa
aggttcaaatgcgacatgtgtgactactgctgccgccaggagcgacacatggtgatgcat
cgtcgaacccacactggagagaaaccatatgcctgcagccagtgtgaaaaaaccttcaga
cagaagcagctgctggacatgcacttcaaacgctaccacgaccccaactttatccccacc
gccttcgtctgccccaagtgcagcaagaccttcactcgcaggaacaccatggcacgccac
tctgagaactgcagtggtgaggttgaggacgctgagaacggaactcctaccccaaagaga
gggagaagaggaagaaagagaaagatgaggagcaggagagatgacgatgatgacagtgag
gaggatcccgttgatcccgatgaggaggaagagggtgagggagaggaagaatcatcactg
ctacaggaagatgaggacccagaaagcatggaattggaccaggcccctgccgccatcccc
gtcccagcccccgacgagccaccagtcaagaggaaacgaggccgaccccctaagaatgcc
cctaagcctccgacacctatcaagtcagtcagagtggctgccaagacaacggctgctgct
gccatcattcaggtggaggatgagagcactggagcggtggagaacatcatagtgaagaag
gaggagggtgacacgtctgcagcgacacctctggagcagggagtggccctgacggtggag
ggggttgggctggagggggaaggggtggagactgttgagctggctgtgaatgaagaaacg
gcagctgctgccgccaatggcgatctaacgccagagatgatcctgagcatgatggaccgg
tga
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