Hippoglossus stenolepis (Pacific halibut): 118109837
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Entry
118109837 CDS
T08308
Symbol
caprin1b
Name
(RefSeq) caprin-1b isoform X1
KO
K18743
caprin-1
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsp03019
]
118109837 (caprin1b)
Messenger RNA biogenesis [BR:
hsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
118109837 (caprin1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Caprin-1_C
Caprin-1_dimer
DUF5891
Motif
Other DBs
NCBI-GeneID:
118109837
NCBI-ProteinID:
XP_035013150
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All DBs
Position
5:12733865..12744833
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AA seq
684 aa
AA seq
DB search
MPSAMNANRAVQSASPDVGSAPGLMGNFTFGGQSDVLKQVLCIIDKKARNMEKKKSKLDD
YQVRKNNGERLNQDQLEALSKYQEITYNLEFSRELQKTFMALGQDVQKVVKKSARREQLQ
RDEAEQRRLKTILELQFLLDRLGDETVRQDLKQGLCGSPLLTDTDLAAFDEFYKLVGPDR
DQNVRLVDKYEEASVHLWDLLEGRDKAVVGTTYKALKETLDQVLLSGYFDKSQSQSHQNG
VCEEEEEEEPVAAAVVAAAESSEAEEQTVDPETEIIEEFTEPIAVETTEFVNRQFIPDGT
YSGSEKEQGDEWTTETEAVSAMQQQQPVQPAAPPVALETHPMNSTSPVPPSDPLVRKQVV
QDLMAQMQGTYNFMQDSMLDFDGQPIDPAIVSAQPMAPAQNMDLTQMVCPPESRLSQPNT
VPVQPEPTQVPIVSPTPPPMYQTSHTPDPRPLTETIDPNQTSMSLSSEQPPPSTALPPAS
PTQVFQPVSKAPQSSGINVNAAPFQSMQTVFNLNAPVPPADETEALNQANQYQNNYNPAF
DNQAQHPVEQTEMQSEQLQSAVGAFHSQDQSGGHQQPSQQGPGFGRQGQSFYNSRGMSRG
GPRNARGMINGYRGSSNGFRGGYDGYRPPFANTQNSGYGQTQFNTPRDYSNGNYQRDGYQ
QNYKRGAGQGPRGVSRGNTQAMRS
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgccctcagcaatgaatgcaaacagagcagtgcagtctgcgagcccagatgtgggatcc
gctccagggttgatgggcaattttacattcggtggacagtctgatgtcttgaagcaggtg
ctgtgcatcatcgacaagaaggcccgcaacatggagaagaaaaagagcaaactggatgat
tatcaagtcaggaagaataatggggagcgactcaaccaggaccagctggaggccctctcc
aaataccaggagatcacgtataacttggaattttcccgagagttgcagaagactttcatg
gcactgggacaagatgtccagaaggtggtgaagaagtctgcgcggcgggagcagctgcag
cgcgacgaggcagagcagaggaggctgaagacgatcctggagctgcagttcctcctggac
cggctgggagacgagacggtgcggcaggacctgaagcagggactctgtggatcaccgctg
ctgaccgacacagatcttgcagcttttgatgagttctacaaattagtgggaccagaccgt
gatcaaaatgtcaggttggtcgacaagtatgaagaagcatctgtgcacctctgggacctg
ctggaagggagggacaaggctgtggttggaacaacatacaaggctctgaaagagactttg
gaccaggttctgctgagtgggtactttgacaagtctcagtctcagtctcatcaaaatgga
gtgtgtgaggaggaagaggaggaagagccagtggcagcagcagttgtggcagcagctgaa
tcgtcagaagcagaagagcagactgttgatccagaaactgaaataattgaggagttcaca
gagcccattgcagtggaaacaacagagtttgtaaatagacagttcattccagacggcaca
tacagtggaagtgagaaggagcagggggatgagtggaccacggaaacagaggcagtcagt
gccatgcagcagcagcagcccgtgcagcctgcagctccccctgttgccttggagactcac
cccatgaactcaacatctcctgtgccaccttccgaccccctggtcaggaagcaggtggtg
caggatttaatggcacagatgcagggaacgtacaacttcatgcaggactccatgctggac
tttgacggacagcccattgacccggccattgtatcggcacagcccatggcccctgctcaa
aacatggacttaacacagatggtgtgtcctcctgagtcccggctatcacaacccaacact
gttcctgtccaacctgagcccacgcaagtccccattgtctccccaacaccgccccccatg
tatcagacctcacacacgccagatcctcgacccttaacagaaactatcgaccccaaccag
acctcaatgtccttatcatcggagcagcctcccccctcgactgctctcccccctgcctct
ccgacgcaggttttccagcctgtttccaaagctcctcaaagcagtggcatcaatgtcaat
gctgcaccattccagtcaatgcagacagtgttcaaccttaatgccccagtcccaccagct
gatgagacggaggctttgaaccaggccaaccaataccagaacaactacaacccggccttc
gataaccaggcgcagcatcctgtggagcagacggagatgcagtcagaacaactgcagtct
gcagttggtgctttccattcccaagaccagtcaggaggccaccagcagccttctcagcag
ggcccaggcttcggcaggcagggtcagtccttctacaacagcagaggcatgtctcgtggc
ggacctcgtaacgccaggggcatgatcaatggctacagaggctcatcaaatggattcaga
ggtggctatgatggttatcgtccgccgttcgccaacactcaaaactctggctacggacag
acccagttcaacacacctcgggattactcaaatggaaattatcagagggatggttaccaa
cagaactacaagcgcggagctggtcagggacccaggggagtgtcgagaggcaacactcag
gcaatgcgatcctga
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