Hippoglossus stenolepis (Pacific halibut): 118109847
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Entry
118109847 CDS
T08308
Symbol
cnot4a
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118109847 (cnot4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hsp03000
]
118109847 (cnot4a)
03019 Messenger RNA biogenesis [BR:
hsp03019
]
118109847 (cnot4a)
04121 Ubiquitin system [BR:
hsp04121
]
118109847 (cnot4a)
Enzymes [BR:
hsp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
118109847 (cnot4a)
Transcription factors [BR:
hsp03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
118109847 (cnot4a)
Messenger RNA biogenesis [BR:
hsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118109847 (cnot4a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
118109847 (cnot4a)
Ubiquitin system [BR:
hsp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
118109847 (cnot4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
zf-C3HC4_2
zf-RING_2
DZR_2
Med7
RDD1
zf-CCCH_2
zf-C3HC4
Torus
Motif
Other DBs
NCBI-GeneID:
118109847
NCBI-ProteinID:
XP_035013163
LinkDB
All DBs
Position
5:11346350..11356308
Genome browser
AA seq
803 aa
AA seq
DB search
MSHSPEMKDDPMECPLCMEPLEIDDVNFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEEIQRIKNEKKQKQNEKKQKVTENRKHLASVRVVQRNLVFVVGLSQRL
ADPEVLKRPEYFGRFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKSMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQDLYKINPSFLQPPACGTEKSKSKSNSTQRSNNSNGKDGWPTLSGHNKLANGLSEDRKS
PPLLDYLDQDVITSDGLDTDLGPGQRTSLSPFSSNCDSNSPSDKPSESIGMVNGETLQPI
PTSDSPSPPPGLTKPSLVVPISVSDLTARSPFEGAAAESQSLFSDNSNFRHPNPLPAGLP
PFPSSPRGSSDWPMTPEPQSLFTSDTIPVSSSTDWQAAFGFGSSSKQQDDDLGFDPFDVT
RKALADLIEKELSVQDQSPLSPGLLPHGSNHGPGLPPLNPSAASHHFPSGLPRLPQLHHR
AIYSSFSFPGSQNSQASQQQPAARHPWMGVPTRNNLTHLNHSASAASHSNFLDLNLPPQH
NTGLGGIPISENSGSIDGLNVKEWQDGLRALLPNININFGGLPNSSSSSSSSSSNSVNHI
GGPTGPVGISHSLSWDGTASWMDPAIITGRNYNAGIPASVGNSLDCLQDDNPPHWLKSLQ
ALTEMDGPASSVVTTPQPLHSGLLDAHLPLHHRAAGGWAPYMPPPTANPASQYHSPPPGF
QTAFRPPGQPATELLQSAAVDRH
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atgtcccacagccctgaaatgaaggatgaccccatggagtgccctctgtgcatggagccg
ctggaaattgacgacgtcaacttcttcccctgcacctgtggctaccagatctgccgcttc
tgttggcatcgcatccgcacagatgagaacggcctgtgccctgcctgcagaaagccgtac
ccagaggacccggctgtgtacaagcctctgtcacaggaggagatccaaaggataaagaat
gaaaagaagcagaaacagaacgagaagaagcagaaggtgacagaaaaccgcaaacatctg
gcaagtgtcagagtggtccagagaaatctggtgtttgtggttgggctctcacagcggctc
gccgacccggaggtcctaaaacgaccagagtattttgggaggttcgggaaaatccataaa
gtggtcatcaacaatagcacatcttatgccggttcacaggggcctagtgctagcgcttat
gtcacttacatccgctctgaagacgctttaagagcaatacagtgtgtgaacaatgtggtt
gttgatggcagaacactcaaggcttctttaggcacaacaaagtactgcagttacttcctt
aaaagtatgcagtgtcccaaacctgattgtatgtatctacatgagctgggggatgaagcg
gctagctttactaaagaggagatgcaggcgggaaaacatcaagagtacgagcaaaaactc
ctccaagacctctataaaattaaccctagctttctacaacctccagcatgtggtacagag
aagtcgaagagtaaatccaactccacacagagatccaacaatagcaatgggaaagatggg
tggccgacgctgtcagggcataacaaactggccaatgggctttcagaggaccgcaagtcc
cctccgctgctagactatctagaccaagacgttattacttcagatgggctagatacagac
ctgggtcctggtcagcgtacaagcctgtcccccttctcctccaactgtgacagtaacagt
cccagtgacaaaccttcagaatcaatcggtatggtgaatggagagactttacaaccgata
cccaccagtgactccccctcccctcctccgggtttaaccaagcccagcctggtggtgccc
atcagtgtgtcagacctcacagcccgttcccccttcgagggtgcggcagccgagtcccag
tcgctcttctcagacaacagcaacttcagacaccctaacccactccctgccggcctgccc
cccttccccagctccccccgcggcagctctgactggcccatgacccctgaaccacagagc
ctcttcacatcagacacaataccagtgtcttcttccacagactggcaggcggcctttggc
ttcggctcgtccagcaaacagcaggatgacgacttgggcttcgatcccttcgacgtcacc
cgcaaggctttggccgacctgatagagaaggagctgtcggtgcaggatcagagtcccttg
tccccggggctcctcccccacgggagcaatcacggtcccggcctgccacccctcaaccca
agcgccgcctcccaccacttccccagtggcctgccacgccttccccagctccaccacaga
gccatctacagctcgttcagcttccccggcagtcagaacagccaggccagtcaacagcag
ccagctgccagacacccctggatgggcgtccccacacgaaataacctcacacacttgaac
cactcagccagtgctgcctcacacagtaatttcctggacctgaatctgccccctcagcac
aacacagggctgggagggatccccatctcagaaaacagcggctctatagatggcttaaat
gtaaaagagtggcaggacggcctcagagctctcctgcccaacatcaatatcaatttcggg
ggtctcccaaactcctcttcgtcttcatcctcctcatcctccaacagtgttaatcacatc
ggtgggccgacagggccagtaggcatctcacacagcctgagctgggatggtacagccagt
tggatggaccctgctatcatcacaggtagaaactacaatgcaggcatcccggcctcggta
ggcaacagtttagactgtctccaggacgacaacccaccacactggctcaaatccctgcag
gcactcacagagatggacggcccagccagttcagtggtgaccacgccccagcccctccac
agcggcctcctcgacgcccacctcccactccaccacagagccgccggcggctgggctccc
tacatgcccccacccacagccaaccccgccagccagtaccactccccgcccccaggcttc
cagaccgccttcagacccccaggacagcccgccacagagctgctacagagtgccgccgtg
gaccgccactga
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