Hippoglossus stenolepis (Pacific halibut): 118109931
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Entry
118109931 CDS
T08308
Name
(RefSeq) laminin subunit beta-1-like isoform X1
KO
K05636
laminin, beta 1
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04510
Focal adhesion
hsp04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118109931
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118109931
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
Motif
Other DBs
NCBI-GeneID:
118109931
NCBI-ProteinID:
XP_047195787
LinkDB
All DBs
Position
5:complement(28976914..29068169)
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AA seq
1750 aa
AA seq
DB search
MTQLQLALLLVLQVCTCAQEGGASVGGDLDDVILPELSDICTEGSCYPATGDLLIGRAHQ
LSSTSTCGLRRPEPFCIVSHLQEEKKCFACDSAALYDELAEQTHSHRVENVVTTFAPNRL
KTWWQSENGQENVTIQLDLEAEFHFTHLIMTFKTFRPAAMVIERSSDFGKTWQVYRYFAY
DCETSFTAIFRGPMQKVDDVMCDSRYSDIEPSTEGEVIFRVLDPAFRINDPYSPKIQNML
KITNLRVKFTKLHTLGDNLLDSRMEIKEKYYYAIYDMVVRGNCFCYGHASECAPIHSDGQ
TREDMVHGHCRCNHNTKGLNCELCQDFYHDLPWRPAEGRNTNACKKCNCNQHSDSCHFDM
AVFVASGNVSGGVCDDCQHNTAGHNCEQCKPFYYQHPERDVRDPNICQPCSCDPLGSLNG
GSCDQMTDVRTGLIAGQCRCKVNVEGERCERCKQAHYGLSDTPDGCSACTCSPVGTLPGG
NPCDSETGSCFCKRLVIGRDCDQCVSEHWGLSNDMDGCRPCDCDLGGAINNQCDQGTGQC
ICKDHMFGRRCDQVESGFYFIALDHYTYEAEDANLGPGVMVVQRPHPQDRSPTWTGIGLV
NVPEGAFLEFSVENIPHSMEYDIIIRYEPQLPDQWEEVLMTVMRPGPITADSRCINTVPD
DDNQMMSLHPGSRYVVLPRPVCFESHLNYTVRLSLPLYSALSDVQSPYTLIDSIVLMPHC
KNLEIFTASEGGDSSGNSGWDIFQRYRCLENSQSVVKTPMTDICRNFIFSISAMLHQGAK
ECQCDLQGSLSTVCVPSGGQCQCRPHVVGRNCDTCAPATFQFGPNGCRECACDPQGSQNP
FCDQLSGQCVCVAGAYGRQCDRCLPGHWGFPTCRTCPCNGHADECDPSTGYCISCRDHST
GHSCDRCLDGFYGDPMLGSGDHCRPCMCPDGPSSRRQFAGSCYRSDDSQQAICVCNTGYR
GARCDECSPGYYGNPGEVGGQCQPCQCNNNIDMLDPESCNAQTGECLRCLYHSEGAACQS
CKLGYYGNALLQDCRKCVCNKLGSDTSSCASGDCHCDGSSGQCHCLLNVIGQHCDRCAPD
TWNMASGRGCQLCDCEPKHSYGTSCNEISGQCSCRPGFGGRTCSECRELFWGDPEVKCHG
CDCDPRGVSEHQCNKVSGHCVCVEGVSGPRCDTCARGFSGIFPDCLRCHRCFAEWDNVIG
QVTNQTHRLVNKVNALKASGVSGPYRKSIDNIERSAADIWVLLNQNPASQPLTEIQHLLQ
QASDLMRALSQMLSHTEQTLVQAEEQDSAADSKLDSVTSDAQKLERTVQELLDQVEFIKN
SDIRGATDSITKYFLLSEAAEARANSSTIDAGSSVETSAALRQLTEDKLNQTREEFLRRH
SEHAQKLDDLAGELQTLDLSEISHKTCGSPLADQDLCTSCGGEGCDGVVMTANSAWRKTQ
ESEQEIISAIGEVEKLSKMVSEVKLKADEAKLSAQDVLMKTNRTKQKVDQSNDELRSLIR
QIRDFLTQDAADLESIELVANEVLAMQMPTTPAQLQNLTEEIRQKVGELGHVETILQQST
DNIQRAENLLDQARRASEEAADVKESAEKMKKALEEARRAQTAASSAIQQAAGDIQNTNN
LLSIVQSETTEAELKLTNATKRLQRLEQDVTLLIDKAVNVTMSSEQTNQDAESITKIAEE
VKKDLGSDLKAKYATVGQLIDHKAGGVADAKKRAVSLQQEAKQLLLQASDKLRLLKDLEK
SSTKTNKLWR
NT seq
5253 nt
NT seq
+upstream
nt +downstream
nt
atgacgcagcttcagctcgcgctgcttctcgtcctacaggtgtgcacctgtgctcaggag
ggaggggcctctgtgggcggagacctggatgatgtcatcctcccggagctcagtgacatt
tgcactgaaggcagctgttacccagcaacaggagaccttctgattggccgagctcaccaa
ctgtcttccacctccacttgtggtctgaggcgacctgaaccgttctgcatcgtcagccac
ctgcaggaagagaagaagtgttttgcctgcgactcggcggcgctctatgacgagctggct
gagcagacacacagccatcgtgtcgagaatgtcgtgactacgtttgctccgaacagactg
aagacgtggtggcagtctgaaaacggtcaggagaacgtcaccattcagctggatctggag
gcagagtttcacttcactcacctcatcatgaccttcaagacgtttcgtcctgctgccatg
gtgattgagcgatcatcggactttgggaagacgtggcaggtttatcgttacttcgcatac
gactgcgaaacatcttttaccgccatcttccgaggtccaatgcagaaggttgatgatgtc
atgtgtgactcacgttactccgacattgagccatccactgagggagaggttattttcaga
gttctggatccggcgttcaggatcaacgacccttacagccctaaaatccagaacatgtta
aagatcactaacctgcgagtgaagttcaccaaactgcacacacttggagacaatttactc
gactctcgtatggagatcaaagagaagtattactacgccatctacgacatggttgtccga
ggaaactgcttctgctatggacacgcctctgagtgtgcccccatccacagtgatggacag
acccgggaagacatggttcatggtcactgcaggtgtaaccacaacactaaaggtctgaac
tgtgaactgtgtcaggatttctaccacgatcttccctggagaccagcagagggccgtaat
acaaacgcctgcaagaagtgtaactgtaaccaacactctgactcatgccacttcgacatg
gccgtgttcgtggcttcgggaaatgtcagcgggggcgtctgtgacgactgtcagcacaac
acagctggacacaactgtgagcagtgtaaaccgttctactaccaacatccagagagagat
gtgagggaccccaacatctgccagccctgtagctgtgaccctctgggttcgttgaatgga
ggatcatgtgaccagatgaccgatgttagaaccggtcttatcgccggtcagtgtcgctgt
aaagtcaatgtggagggagaacgctgcgagcgctgcaaacaggcgcattacggactgagt
gacacacctgacggatgttcagcatgtacctgtagccctgtaggaacacttccaggagga
aatccctgtgacagtgaaacaggaagttgtttctgtaaacgtctggtgattggccgagac
tgtgaccagtgtgtgtcggagcactggggcctcagtaatgatatggacggctgcagacca
tgtgactgtgacctcggaggagccatcaacaaccagtgtgatcaagggactggtcagtgc
atctgcaaagatcacatgtttggtcgtcgctgcgatcaggtcgagtctggattttacttc
atcgctctggatcactacacctatgaggccgaggatgccaatcttggacctggagtgatg
gtggtgcagaggccccaccctcaggaccgcagtcccacctggacaggtattggcctggtc
aatgtcccagagggggccttcctggagttttcagtggagaacatccctcactccatggag
tatgacatcatcatccgctatgaaccgcagctgcccgaccaatgggaggaggttctgatg
acagtgatgaggcctgggccaatcacagcagacagccgctgtattaatactgtacctgat
gatgacaaccagatgatgtcacttcatcctggctcacggtatgtggttcttcccagacca
gtttgttttgaatctcatctgaactacaccgttcgcctcagtctgcctctgtactcagcg
ctcagtgacgtccagtctccgtacacactcatcgactcgatcgtgttgatgccgcactgt
aaaaacctggagatcttcacagcctcagagggaggagactccagtggcaacagcggttgg
gatattttccagcgttatcgttgtttagagaatagccagagcgttgtcaagacaccaatg
acagatatctgcagaaacttcatcttcagcatctccgccatgttgcaccagggagctaaa
gaatgccagtgtgaccttcagggctcactcagcaccgtgtgtgttcccagtgggggtcaa
tgtcagtgtcgcccccatgtggtcggaagaaactgtgacacatgtgctccggccacattc
cagttcggacccaacggctgcagagaatgtgcatgtgaccctcaaggttcacaaaatcca
ttttgtgatcagctcagcggacagtgtgtctgtgttgccggtgcgtatggtcgacagtgt
gatcgctgtctgccgggtcactgggggtttcctacctgtcgaacctgcccatgcaatggc
cacgctgacgagtgcgaccccagcactggatactgcatcagctgcagggaccacagcact
ggacacagctgtgacaggtgtctagacggtttctatggtgaccccatgttggggtcaggt
gaccactgtcgtccctgcatgtgtcccgatggccccagcagccggcggcagtttgcagga
agctgttaccgaagtgacgactcacagcaggcgatctgtgtctgcaacactggatacaga
ggtgctcgctgcgatgagtgctcacctggttactatggaaaccctggtgaggtggggggt
cagtgtcaaccgtgtcagtgcaacaacaacatcgacatgttggacccagagtcttgcaac
gctcaaaccggcgagtgtctgcgctgcctgtaccacagcgagggcgccgcctgccagagc
tgcaaactgggttactacggcaacgcgctgctgcaggactgcagaaagtgtgtttgtaac
aagctcggcagcgacacctccagctgtgcgtccggtgactgtcactgtgacggcagcagc
ggtcagtgtcactgtctcttgaacgtgattggtcaacactgcgaccgctgtgccccggac
acctggaacatggcgagcggccgcggctgtcagctctgcgactgtgaacccaaacactcg
tatgggacgtcctgcaacgagatcagtggtcagtgttcctgtcgccccggcttcggagga
agaacctgcagcgagtgtcgagagctgttctggggagatccagaggtcaaatgtcacggc
tgtgactgcgaccctcgtggcgtctctgaacatcagtgtaacaaagtcagtggtcactgc
gtctgtgtggagggcgtgtctggaccacgttgtgacacgtgcgcacgtggattctcagga
atcttccccgactgcctccgctgccaccgttgctttgctgaatgggacaatgtcatcggt
caggtgaccaatcagacgcaccgccttgttaacaaggtcaatgccctcaaagccagtgga
gtgagcggaccgtacaggaagtccatcgacaacatcgagaggagcgccgcggacatctgg
gtcctcctgaaccagaacccagcttcacaaccgctcactgagatccagcacctgctccaa
caggccagtgacctgatgagggccctgagccagatgttgagccacacagaacagactctg
gtccaggcagaggaacaggactcggctgcagattctaaactggactctgtgacgtcagac
gctcagaaactggagcgcacggttcaggagctgctggatcaagtggagttcatcaaaaac
tctgacatcagaggggcgacagacagcatcactaagtacttcctgctgtctgaggcagct
gaagctcgagccaactcctccaccatcgatgctggaagctctgtggaaacctctgccgct
ctacggcagctcacagaggacaaactcaaccaaaccagagaggagttcctgaggagacac
agtgagcacgctcagaaactggatgacctggctggagagctgcagactctggacctatca
gagatcagccataagacatgtggcagtccattagcggatcaggatttgtgcaccagctgt
ggaggcgaaggatgtgacggcgtggtgatgacggccaacagtgcgtggaggaagactcaa
gagtcagaacaggaaattatcagtgccatcggggaagtggaaaaactgtctaagatggtg
tcagaggtcaagctgaaggcagatgaagcgaaactgagcgctcaggacgtcctgatgaag
accaacagaaccaaacagaaagtggaccagagtaacgatgagctgagaagtctcatcaga
cagatcagagactttttaacacaggatgccgcagacctagagagcatcgagctggtggct
aacgaggttctggcaatgcagatgccgactacgccggcacagctgcaaaacctcacagaa
gagatccgacagaaggtgggagaactgggacatgtggagaccatactgcagcagagtact
gacaacatccagagagctgagaacctgctggaccaggcccgtcgcgccagtgaggaggca
gctgatgtgaaggaatctgcagagaaaatgaaaaaagctctggaagaagctcggagagct
cagaccgcagccagcagcgccatccagcaggctgccggcgacatccagaataccaacaac
ctgctgtctatagtgcagtcagagacaacagaagcagaactgaagctgaccaacgccacc
aaaaggctgcagaggcttgagcaggacgtaacattactaatagacaaagctgtgaatgtc
actatgagctctgaacagaccaatcaggatgcagaaagcatcacaaagatagcagaggag
gtgaagaaagacctggggtccgacctgaaggctaagtatgccacagtggggcagctgatt
gatcacaaggcagggggtgtggctgatgccaagaagagggcggtgtcactgcaacaggaa
gccaaacagttgttgttgcaggccagcgacaagttgcggctgctgaaagatctggagaag
tcgtctacgaaaaccaacaaactctggaggtga
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integrated database retrieval system
