Hippoglossus stenolepis (Pacific halibut): 118110024
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Entry
118110024 CDS
T08308
Name
(RefSeq) transcription initiation factor TFIID subunit 4 isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
118110024
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsp03021
]
118110024
03036 Chromosome and associated proteins [BR:
hsp03036
]
118110024
Transcription machinery [BR:
hsp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
118110024
Coactivators
SAGA/TFTC/STAGA complex
118110024
Chromosome and associated proteins [BR:
hsp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
118110024
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
118110024
NCBI-ProteinID:
XP_035013457
LinkDB
All DBs
Position
5:28777301..28791355
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AA seq
973 aa
AA seq
DB search
MAGASDPLEDMLFTEVDEKAVSDLVGSLESQLGDRKTPAPSLSDGNREAAPAAAAQFSGK
VRDQVGSAEPQQGHPKAGLTQGPGANEPLSGPSLSSSTSSVATGAVITTGAGLQTVGAAP
PTASPGPGPVTLPTPPAAAASFHRAAVLAPSAAPSSSAVPVADGSRSGSPALLSLNGNGG
AAKLVNSPAVAPPAGGSTVISAVSAGGSAVINPMTSQPTFPGPAPTVVLQRHPGPAASVT
QNGMDPKVVTQGAPPASSPQVMNHSTPLMHAKMLVPSQPVSGNTVILTSTASAVQSPITQ
TVSSPAAITLTGVKPAMNGVAQPAVTVVRPPGGPVMATSLQQQRPAMVASSTRAAAPQLP
LAVRPQQQTTIQLPPGFTMPAGMVLVRTETGQLVMVPQQVLAQAQAKTQQAQTVANITQR
PGTPTAGAAIRVSTATTAPVTPHTVRLAAPAPTRMVQSPSTTTVQKAITVAPGGAAVSVK
MTTPQKAPTVITAGGMPAAKPAAALTNTTPAATATPPNRVTVVSQEMQENVKKCKNFLAT
LIKLASHNSPSPDTSKNVKALVQDLLDAKIEPEEFTTRLQAELKSSPQPYLIPFLKKSLP
ALRQSLLSSQQSLSVPSTSTPALAAPGSITAIRPRLPVSPASSTIKLNTPLTNTTALAVG
RAGVQTVQTRSPVVISQTLRTQATLIRGSPTIVGKSLVHLAAQANQKKLSDPGGGTFRDD
DDINDVASMAGVNLNEENARILATSSELVGTKIRSCKDEAFLPTGLLHRRILDTAKKLGV
SEVPLEVVNFISHATQSRLRSLLETVSAVAQHRTDGGKDEDHHEPSSDVRSQLRFFEQLE
RMEKQRKDEQEREMLLKAAKSRARQEDPEQARLKQKAKEMQQQELAQMRQRDANLTALAA
IGPRKKRKLDSPGGAAAGPEVASGSGVGSSVSPSSRQQLRQRITRVNLRDFIFCLEQDRS
TARSLMLYKALLK
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atggcgggagcctccgacccactggaggacatgctcttcacggaggtggatgaaaaagcc
gtcagcgacctggtgggttcgctcgagtctcagctgggcgacagaaagactcccgcccct
tcgctttccgacgggaaccgggaggcagctccggcggccgcggctcagttctcagggaaa
gtgcgcgatcaagtggggtctgctgagccgcaacaagggcatccgaaagcggggttaacc
cagggacccggcgccaacgagccgctctccggtccgagcctctcctcctctacctcctcc
gtcgctaccggggccgtgatcaccaccggagccgggctacaaactgttggagctgctccc
ccgactgcttcccccggaccgggacccgtaactttgcccactccgcccgccgccgctgct
agcttccaccgggcggctgtcctggctccgagcgcggctcccagctcctccgccgtcccg
gtggcggacggttcccggagcggatctcccgctctgctcagtttaaacggaaacggcgga
gctgcaaagttggtgaactcgcccgcggtcgcgccaccggccggaggcagcaccgtgatc
agtgctgtcagtgccggggggtccgcggtcatcaaccccatgacttctcagcccactttc
ccgggaccggctcccaccgtggtcctgcagagacaccccggccccgcggccagcgtcacc
cagaacgggatggaccctaaggtggtgacccagggcgcccccccagcctccagccctcag
gtgatgaaccacagcacccccctgatgcacgccaagatgctggtgcccagtcagcctgtg
tccggaaacaccgtcatcctgaccagcaccgcctctgcagtccagtcccccatcacccag
accgtgtccagtccggctgccatcaccctgacaggggtcaaacctgccatgaacggggtg
gctcagcctgcggtgactgtggtgaggcctccgggcggcccggtgatggccacctccctc
cagcagcagagacccgcaatggtggcgagctcgacccgggcagctgcccctcaacttcct
ctggctgtccggccccagcagcagaccaccatccagctgccccccggcttcaccatgcct
gcaggtatggttctggtgcggacggagacgggtcagctggtcatggtccctcagcaggtc
ctggctcaagctcaggccaagacccaacaggcccagactgtggccaacatcacccagaga
cctggcacaccgacggctggggccgccatccgggtcagcaccgccaccacggctcctgtc
acacctcacaccgtccgcctggcggcacccgctccgaccaggatggttcagtctccctcc
accaccaccgtacagaaggccatcaccgtggcccctggtggtgcagcggtgtctgtgaaa
atgacgacacctcagaaggctccaacggtgataacagccggggggatgcccgcagccaaa
cctgccgccgctctgaccaacacgacccctgctgccacagccacgccccccaacagagtc
accgtggtgtcgcaggagatgcaggagaacgtgaagaaatgcaagaacttcctggccaca
ctcatcaagctggcgtcccacaattctccctccccagatacctccaagaatgtgaaggcc
ctggtgcaggacctgctcgatgctaagatcgagccggaggagttcaccactcggctgcag
gctgagctgaagtcctcccctcagccctacctcattcccttcctcaagaaaagtctccct
gccctgcgtcagtctctgctcagcagccagcagtctctgagtgtccccagcacctccaca
ccagccctggccgcccccggctccatcaccgccatcagaccccggctgcccgtcagtccg
gcgagcagcaccatcaaactgaacacgccgctcactaacacaacagctctggccgtgggc
agagccggagttcagacggtccagactcgttcacctgtcgtcatcagtcagactctcaga
actcaagcgacgctcatcagaggatctccgaccatcgtcggcaagagtctggttcacctg
gcagctcaagccaatcagaagaaactaagcgacccagggggcgggacgttcagagatgac
gatgacatcaacgacgtggcgtccatggctggcgtcaaccttaacgaggaaaatgcccgt
atcctggcaaccagctcggagctggtgggcacaaagatccgctcgtgtaaagacgaagcc
ttcctgcccactggtctgctgcaccgccgcatcctggacacagcaaagaagctgggtgtg
agcgaggtgccgctggaggtggtgaacttcatttctcacgccactcagtccagactgcgc
tcgctgctggagacggtgtcggccgtcgctcagcatcgtacagacggaggaaaggatgaa
gatcatcatgaaccgtcgtcagacgttcgctcgcagcttcgcttcttcgagcaactggag
cgaatggagaaacaaaggaaagatgaacaggagagagagatgctgctgaaggctgccaag
agtcgtgcgagacaagaggatccagaacaggctcgtctgaagcagaaggccaaagagatg
cagcagcaagagttggctcagatgcgacaacgagacgccaacctcacagccctcgccgcc
atcggaccacgcaagaaacgcaagctggactccccgggaggagcagcggcgggcccagag
gtggcctcaggctcgggtgtcggctcctctgtgtccccctcctcccgccagcagctccgt
cagcgaatcactcgagttaacctcagggacttcatcttctgtctggagcaggaccgcagc
acggcccgctcgctgatgctctacaaggcgctgctgaaatga
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