Hippoglossus stenolepis (Pacific halibut): 118110101
Help
Entry
118110101 CDS
T08308
Name
(RefSeq) PDZ domain-containing RING finger protein 4 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
hsp04121
]
118110101
Enzymes [BR:
hsp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
118110101
Ubiquitin system [BR:
hsp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
118110101
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
118110101
NCBI-ProteinID:
XP_035013594
LinkDB
All DBs
Position
5:complement(10907643..11042273)
Genome browser
AA seq
884 aa
AA seq
DB search
MASQRKSDTDHRGAGVCQRGCGLPLPAEDALKAEHCCVEALRTVTDALEERSAAVEHGAR
MSRLRWNRREQLLLAQVCRLQNQAQLAALQYQRRLHQYMVHINSIAQQMVGHCKSDVETA
ADTQGHRSEESTRAEPQEQVEEPEVNGKELSKSNHEETLEAFCGAKEPVVVQVIRRTPSG
RPHGPLQEIHVVDVCTQTDITFEHIMALAKLRPSTPPVPDVCPFLLSDSCHSLHTMDQEF
YEGTDYLSPIPADGERTEEFEYEEVELYRLNSQEKLGLTLCYRTDEEEDVAIYVSEICPN
SIAARDGRIREGDRILQINGQDVQDREEAMAALSNDECRNIVLLVARPEMQLEEAWLDDE
HSEFLEQLKMEMLEEQQREEVELAALQEEQENEQRVEDDKPTCSTLPHHKSSVLSIKDRM
ESSEHNVLAQIQRRLSQCLRDNRDTHCTIGSTRLEDKDDEDDGEMEGDRFQQLLELKCQI
RNSGEYDLFYSRRSTIECSVGEQGGVQHELRLLNEELRSIELECQNIMQAHKLRKGQLSP
STGQSAPSIKNQSLHHGEPTKGKLTDIHERLEKSDKDSSSAYNTAESSRSTPLAMDRSPE
HSLQRMVSLTNQRNLCSSLASAHSLSSSPIPVCRAPVQGISSSPDHSNPSESEHTPQAEE
EGKGTLKTNACQIPYFSPSHSSQQRQTNIPAHARHYQSYMQLIQQRSAVEYAQSQLSLLS
VCKEPQRPINEPKMEWKVKIRSDGTRYITKRPVRDKILRERALKIKEERSGGMTTDDDAM
SEMKMGRYWSKEERKQHLVRAKEQRERREFMQRSRLESLKENPQSSSEGRKEVSIIELSH
KKMMKKRNKKILDNWMTIQELMTHGTKAPEGAKVHNAFLSVTTV
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgcagaggaagtcggacacggatcaccgcggtgcgggtgtttgccagcgggga
tgcgggctccctctgcccgccgaggacgccctcaaagcggagcactgctgcgtggaggcg
ctccgcacggtcaccgatgcgctggaggagaggagcgccgctgtggagcacggagcccgg
atgtcgaggctcaggtggaacaggagggagcagctcctgctggcccaggtgtgcaggctc
cagaaccaggctcagctcgctgctctccagtaccagcgcagactgcaccagtacatggtg
cacatcaacagcatcgcgcagcagatggttggacactgcaagagtgatgtggagacagct
gctgacacgcagggccaccgatcagaggaatccacacgtgcagagccacaggagcaggtc
gaggagcctgaggtgaatggaaaggagctgtccaagtccaatcatgaggagaccttggag
gccttctgtggtgccaaggagcccgtcgtggtgcaggtcatcaggcggacccccagcggc
cgaccccacggcccccttcaggaaatccatgtggtggacgtgtgcactcagaccgacatc
acctttgaacacatcatggcgctggcaaagctgcggccttcgacccctcctgtgcctgac
gtctgtcccttcctgctctctgacagctgtcactctctccatacaatggatcaggaattc
tatgaagggacagactacctctcccctattcctgctgatggagagaggacagaggagttt
gaatacgaggaagtggaattgtatcgactcaacagccaagagaagctggggttgactctg
tgctacaggacggacgaagaggaagatgtcgctatctatgtcagtgagatctgtccaaac
agcatcgctgccagagacggacgcatccgagagggggatcgcattttgcagattaatggc
caggatgtacaagaccgagaagaagcaatggctgcactctccaatgacgagtgtcggaac
atcgtgctgctggttgccagacctgagatgcagctggaggaggcctggctggatgatgag
cacagcgagttcctggagcagctgaagatggaaatgctggaggagcagcagagagaggag
gtggaattagctgccttacaggaggagcaggagaatgaacagagagtagaagatgataag
cccacctgttcaacacttcctcatcacaagagcagcgtactgagtataaaggacagaatg
gaaagctcggagcataatgtcctggctcagatccagagacgtctgtcccagtgcctgaga
gacaaccgggacacacactgtaccatcggctccacgcggctagaggacaaagacgacgag
gacgatggtgagatggagggtgatcgattccaacagctgttggagcttaagtgtcagatc
cgtaacagcggtgagtacgacctgttctacagccgccgcagcaccatcgagtgcagcgtg
ggggagcagggcggcgtacagcacgagctgcgtttgctcaacgaggagctgcgcagcatc
gaacttgaatgtcagaacatcatgcaggcccacaagcttcgtaagggacagctgtctccc
tcaacgggccaatctgcaccctccatcaaaaaccaaagcctccaccacggcgagcccaca
aagggtaagctgacagacattcatgagaggctggagaaatcggacaaggacagctccagt
gcctataacacagcggagagctcacgcagtacccctctggcgatggaccgctccccagag
cattcgctccagaggatggttagtctcaccaaccagaggaacctctgcagcagccttgcc
tctgcccactctcttagctccagccccatccccgtgtgccgtgctcctgtccaaggcata
agcagcagccccgaccacagcaatccatctgagtcggagcatactcctcaggctgaggag
gagggcaaagggacactaaagacaaatgcttgccagattccttacttctctccatcccac
agttcccagcagaggcagaccaacatcccagctcatgcccgccattaccagagctacatg
cagctgatccagcagcgctcagctgtggaatatgctcagagccagctcagcctgctcagt
gtgtgcaaagagcctcagcggcccattaatgagcccaagatggagtggaaggtcaagatc
cgcagtgatggaacccgctacatcactaagaggccggtgagagacaagatcctgagggag
cgagccctgaagattaaagaggagcgtagcggcgggatgactacagatgacgatgcaatg
agtgaaatgaagatgggaaggtactggagtaaagaggaaaggaagcagcacctggtcagg
gcaaaagaacagagagaaagacgggagttcatgcagcgtagtcgactggaaagcttgaag
gaaaatcctcagagcagcagcgagggtcgcaaggaagtcagcatcatagagctcagccac
aagaagatgatgaagaaacgcaacaagaagatccttgacaactggatgaccatccaggag
ctgatgactcatggcactaaggcccctgagggagccaaggtgcacaatgccttcctatca
gtcactactgtataa
DBGET
integrated database retrieval system
