Hippoglossus stenolepis (Pacific halibut): 118110114
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Entry
118110114 CDS
T08308
Symbol
cftr
Name
(RefSeq) cystic fibrosis transmembrane conductance regulator
KO
K05031
cystic fibrosis transmembrane conductance regulator [EC:
5.6.1.6
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp02010
ABC transporters
hsp04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
118110114 (cftr)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
118110114 (cftr)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
hsp02000
]
118110114 (cftr)
Enzymes [BR:
hsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.6 channel-conductance-controlling ATPase
118110114 (cftr)
Transporters [BR:
hsp02000
]
ABC transporters, eukaryotic type
ABCC (CFTR/MRP) subfamily
ABCC7 subgroup
118110114 (cftr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CFTR_R
ABC_membrane
ABC_tran
AAA_21
DUF87
SMC_N
AAA_29
AAA_16
RsgA_GTPase
nSTAND3
AAA_22
T2SSE
AAA_23
MMR_HSR1
FtsK_SpoIIIE
NB-ARC
nSTAND1
Zeta_toxin
Dynamin_N
MeaB
Motif
Other DBs
NCBI-GeneID:
118110114
NCBI-ProteinID:
XP_035013620
LinkDB
All DBs
Position
5:4390761..4432528
Genome browser
AA seq
1512 aa
AA seq
DB search
MQKSPVEDANFLSKFFFWWMTPLLRKGFRKKLELTDVYKAPSFDLADNLSERLEREWDRE
VASAKNKPRLMRALARCFFGPFAFFGVLLYLGEASKTVQPQLLGRIIASFDPFHAPERSQ
GFFLALGLCLLFTARFLLLQPAIFGLHHLGMQIRIALFSLIYKKTLKLSSRVLDKISTGQ
LVSLMSTHLNKLDESLGLAHFVWITPLQCILCVGLLWELIEVNGFCALAALTLLGIIQAW
LSQKMGPHRVKRAGMISRRLALTSEIVENIHSVKAYGWEEVMETIIKNIRQDEMTLTRKI
GSLRYFYSASYFFSAILVIVSAIVPHALSKGIILRRIFTTASYCMVLRMTLTRQLPGSIQ
MWYDTLALIKKIEEFLMKEEYRVLEYNLTTSEVELVNVSASWDEGIGELFEKIKQESKAN
GHLNGDAGLFFTNLYVTPVLKNINLYLEKGKMLAVAGSTGSGKSSLLMMILGELVPSEGK
IRHSGRISFSPQTSWIMPGTIRDNILFGLTYDEYRYTSIIKACQLEEDFALLPEKDKTLL
VEGGVTLSGGQRARLGLARAVYKDADLYLLDAPFTHLDIVTEKEIFEKCVCKLMASKTRI
VVTSKLEHLKRADKIILLHNGDCYFYGTFSELQAQRPDFSSLLLGLQAYDNINAERRSSI
LTETLRRVSVDETAGFRGPEPIRQSFRQQPPPIIGSGSQGHPVGDGYPEKRKQSLILSPL
AAARKFSFIGNSQQTLNAPQSSIIEDGVCELSERRFSVVPEDDQVEEVLPRGNLYHHGLQ
HFNGQRRQSVLAFITNAHGQERREQMQSSFRRKLSITPQCDLASELDIYARRLSKDSVYD
ISEEVDEEDMEQCFADDRENVFETTSWSTYLRYITTNKSLVYVLIFIVLVFVIEVAGSVI
GIYLITEKIWRDGANPSSPNFISEQHPNASSPPGHLAVIVTKTSAYYIIYIYVATSESVL
ALGFFRGLPLVHTLLTVSKRLHEQMFSAVLRAPMAVLNTMKTGRIMNRFTKDMATIDDML
PLVLFDLIQLTLIVTGAIFTVSIIRPYIFIAAIPLAVIFVILRKYFLRTGQQLKLLEAEA
RSPIFSHLIISLKGLWTIRAFGRQTYFEMLFHKALNTHTATWFHYLSTLRWFLFRCDMIF
VLFFSAAAFIAVGTNKDKPGEIGIIVALAMLILGTFQWAVITSITVDGLMRSVDRVFKFI
DLPSEEPMPGKSSGKGGPDLIIDNPHAQDCWPNRGQMVIQGLTAKYTEAGRSILSDISFS
VEGGQSMGLLGRTGSGKSTLLSALLRLASTDGEISIDGVSWNSVSLHTWRKAFGVVPQKV
FILTGTFRMNLDPHERHSDEELWRVAEEVGLKTVIEQFPDKLDFQLEDGGNVLSNGHKQL
MCLARSILSKARILLLDEPSAYLDPITLQVLRKTLRQAFSGCTVILSEHRVEPLLECQSF
LMIEGSSMKTYDSLQKLLNETSHLKQAMSPADRLRLFPTLHRLNSSKRAAPQTAKISSLP
EEAEDEVQDTRL
NT seq
4539 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagtcacctgtggaagatgcaaacttcctctccaagtttttcttctggtggatg
acaccgctgctgaggaagggcttcagaaagaaattggagctgactgatgtgtacaaggct
ccttcatttgatctggcagacaacctctccgagagactcgaaagagaatgggacagagag
gtggcgtcagccaagaacaagcccaggctgatgcgagcgctggcccgctgcttctttggc
cccttcgccttctttggtgtcctcctctatctcggggaggcgtctaagacagtgcagcca
cagcttttgggtcgtatcatcgcatcctttgacccgttccatgctccagagcggagtcag
ggattcttcctggccctgggcctgtgcctcctcttcaccgcccgcttcctcctgctgcag
cccgccatctttggcctgcatcacctgggtatgcagatccgaatcgccctcttcagtctt
atatacaagaagaccctgaagttatccagccgtgtcttggacaagatcagcaccggtcag
ctagtcagtctaatgtccacccacctcaacaagctagatgagagcctgggtctggcccat
tttgtgtggatcacccccctgcagtgtatcctgtgtgtgggtctgctatgggaactgatc
gaggtgaacggcttctgcgccctggcagcactgaccctgctgggtatcatccaggcctgg
ctctcacagaagatgggacctcatcgggtaaaacgagcagggatgatcagccgccgcctg
gccctcacctctgagatcgtggagaacatccactctgtgaaggcgtatggctgggaggag
gtgatggagaccatcatcaagaacataaggcaggacgagatgacactgacgaggaagatc
ggttctctgcgttacttctacagtgcttcttacttcttctctgccatcttggttatcgta
tcagccattgtgcctcatgcactcagcaaaggcatcatactgcgtcgaatcttcaccaca
gcctcttactgcatggttctgcgtatgacgctgacccgtcagctgccgggatccatccag
atgtggtacgacacgctggcactgatcaagaagattgaggaattcttgatgaaggaagag
tacagagtgctggagtacaacctcaccacgagtgaagtagaactggtcaatgtgtctgca
tcgtgggatgagggcatcggtgagctgtttgagaagattaagcaggagagcaaagcaaat
ggacacctgaacggtgacgccggcctcttcttcaccaacctatacgtcacacctgtcctt
aaaaacatcaacctgtacctggaaaagggcaagatgctggcagtggctggatccactggc
tcaggaaagagttccctgctcatgatgatccttggagagttggtgccatcagagggtaaa
atcagacacagtggccgcatctccttctcaccacagacttcctggatcatgccggggacg
atccgtgacaacatcctgtttggcctgacctacgatgagtaccgctacacctccatcatc
aaggcctgccagctagaagaggactttgccttgctgccagagaaagacaagacgctcctt
gttgaaggcggggtaaccctcagtggtggtcaaagggctcgcctcggcctggccagagct
gtgtacaaagatgccgacctctacctgctggatgcacctttcacccacctggacatcgtg
acagagaaagagatctttgagaaatgcgtctgtaaacttatggcctccaagactcgtatt
gtggtcaccagcaagttggagcatctcaaacgggcagacaaaattattctgctgcacaac
ggcgactgctacttctacggcaccttctcagagctgcaggcccagcgccccgacttcagc
tccctcctccttggccttcaagcttacgataacatcaacgcagagcgacgcagctccatt
ctcacagaaactctccgcagagtctccgtagatgaaactgccggcttccgaggaccagag
ccaattcggcagtcgtttcgccagcaaccacctccaataatcggttctggatctcaaggc
caccctgtgggcgatggctacccagaaaaacgcaaacagtccctcatccttagccccctg
gcagctgcccgcaagttttccttcattgggaactcgcaacagactttaaatgcaccacag
tcctcaataatagaggacggggtttgtgaactttcagagagaagattctctgtggtaccc
gaggatgatcaagtagaggaggtgctccccagggggaacctgtaccaccatgggttgcag
catttcaacgggcagaggcgccagtctgtcctggcattcatcaccaacgcacacggtcaa
gagcggagagagcagatgcagtcgtccttcagaagaaaactgtccattacaccgcagtgc
gatctggcgtctgaactggacatttatgcccgtcgcttatccaaggacagcgtttatgac
attagtgaagaagtggatgaagaagacatggagcaatgctttgcagatgaccgtgagaac
gtctttgaaactacctcatggagcacttacctgcgctacatcaccaccaataagagctta
gtctacgtcctcattttcatcgtcttagtcttcgtcattgaggttgctggttcagtcatt
ggcatttatctcataactgaaaagatctggagggacggcgcaaacccttcatcacccaac
ttcatcagtgagcagcaccccaacgcctcttcgccccccggccacctggcagtaatcgtc
acaaagaccagtgcttattacatcatctatatctacgtggccacttcggagagtgtgctt
gccttgggcttcttcaggggtctcccgttagtgcacacattactcactgtgtccaaaaga
ctgcacgagcagatgttcagcgctgtgctgcgagcccccatggctgtgctcaacaccatg
aagacaggtcgcatcatgaacagattcaccaaggacatggccactatagacgacatgctg
cctctggtcctctttgacctcatacagctgacattgattgttacgggtgccatcttcacc
gtctccatcatacggccgtacatcttcatcgctgctattcctttggctgttatttttgtt
attctcaggaagtactttctacgaactggacagcaacttaaactactggaagctgaagct
cgtagccccatcttctcccacctcatcatctcactgaagggtttatggacaattcgtgca
tttgggcgtcagacctacttcgaaatgctcttccacaaggcgctgaacacccacacagcc
acctggttccactacctgtcaacgctgcgatggttccttttccgctgcgacatgatcttt
gtcctgtttttcagcgcggcggccttcatcgctgtgggaaccaacaaggacaaacccggg
gagattggcatcattgtggccctggcaatgctcatcctggggactttccaatgggctgtc
atcaccagcatcactgtagatggactgatgcgttcagtggatcgggtattcaaattcatc
gacctgccatcagaggagccgatgcccggaaagtctagtggcaaaggaggcccagatctc
atcatcgacaaccctcatgctcaagactgctggcccaaccgcggccagatggttatccag
ggcctcaccgccaaatacacagaggctggtcgttccattctcagtgacatctccttctct
gtggagggggggcagagcatgggtctgctgggtcgaaccggttcagggaagagcaccctg
ctgtccgccctgctgcgtctcgcctccactgatggagaaatctctattgatggtgtctcc
tggaactccgtctccctgcacacctggaggaaggccttcggagtggtgccccagaaagtc
tttattctgactggaactttccggatgaacctggaccctcatgaacgtcacagcgatgag
gagctgtggagggtggctgaggaggtgggtctgaagacagtgatcgagcagtttccagac
aagctggactttcagctggaggacggaggaaacgtgttgagcaatggacacaaacagctg
atgtgtcttgcacgctccatccttagcaaggcccgcatcctgctgctggacgagccctcc
gcctacctcgaccccataacattacaggtcctgaggaagacgctgaggcaggcgttctca
ggctgcaccgtcatcctatcggagcacagagtagagccgctgctcgaatgccaatcattc
ctgatgatcgagggcagctccatgaaaacctacgactccctccagaaacttctgaacgag
acgagccacctgaaacaggccatgagccctgccgaccggctacgcctcttcccaacgctt
caccgcctcaactccagcaagagggcggcgccgcagaccgccaagatctcgtccctgccg
gaggaagctgaggacgaggtccaggacacgcgtctctaa
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integrated database retrieval system
