Hippoglossus stenolepis (Pacific halibut): 118110169
Help
Entry
118110169 CDS
T08308
Symbol
lamb4
Name
(RefSeq) laminin subunit beta-4 isoform X1
KO
K06245
laminin, beta 4
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04510
Focal adhesion
hsp04512
ECM-receptor interaction
hsp04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118110169 (lamb4)
04518 Integrin signaling
118110169 (lamb4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118110169 (lamb4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EGF_laminin
Laminin_N
EGF_LMN_ATRN
LAMININ_IV_B
LAMB1
LAMB4
F5_F8_type_C
Motif
Other DBs
NCBI-GeneID:
118110169
NCBI-ProteinID:
XP_035013706
LinkDB
All DBs
Position
5:complement(29069155..29105949)
Genome browser
AA seq
1801 aa
AA seq
DB search
MMNMFFFFQNPSLIRVCQRNMINMIFIFIIFLPVSQLQDLQDQCPGSSCSPQLGDLMVGR
AAQLSASSTCGLDGAQNYCIIGYLEEEKKCFSCDSRLPYNRYSNPNSHRIENIITTFDLE
RKTKWWQSENGVHQVSIQFNLETVFQFSHLVLTFKSFRPAAMLVERSKDFGQTWKVFRYF
AEDCSLHFPSVSNEAADSVDDIICDSRYSGSEPSTNGEVVLKALDPIFEIRNPYAPNIQD
LITLTNIRVNFTRLFTLGDTLLSRRRRNPLNKYYYALYNMVVRGSCFCNGHASRCTPVDG
RHGDVFTQTGMVHGRCVCQHNTAGNNCERCQDFHHDSPWRPGGGDTAGICRRCNCHGHSD
SCHFDDIHFEATGGISGGVCDNCRHDRMGPHCEQCRPFLFQDPQRAMDDPHACIPCDCDA
AGAHGGGLCEAQTGQCLCKENVEGRRCEHCKHGFFGLRQDDPAGCQVCRCHALGSVGSCD
QLTGSCECDSLASGPLCDRCLEGFWGLGNSAIRCSPCDCDVGGAQSIMCSPEDGQCSCLQ
NMIGRRCSDPAPGFFLPSLDYFLYEAELAAPLPGGSRSSTDAPSSSSSLLNPGVLPECEK
SYREQGFDFKFTDGRVVLVRRTRRLTRRRRQGQIIPRQKTRDQPVTWTGLGLVRVLEGAG
LRFTVDNLQSSMGYQLVIHFETEALSDWLASVSIIMMSPGDGGCSNNPTGSETLILPGNS
RGRGLDSSVCLNAGGRYFVDVVFNKQSGSDGSHILIDSIGLIPRIESVQNFCSQSDLESF
RHFRCIGLAAELQPHDSLPEVCEGLIKSMSARIHNGAVPCRCNFIGSLGPSCSKLGGFCE
CKPNVMGRCCDTCAPMTFDLGLNGCKSCGCDARGSVAQLCDQVRGQCACRSAATGRRCNH
CHTGFWDFPLCRPCECNNLSETCAEETGECLNCREHATGSHCDRCVEGYYGNPVSRQPCQ
PCLCPDVKYSGQFFATSCQHDPQSLSLTCICQEGHTGSRCNRCSPGFYGDLTLPGARCAE
CPCNNNIDLGDRNACNSLTGECLGCRHNTVGPRCQSCKLGYYGNALVQDCKECSCDRRGT
EVTRCPLGSSCFCDPSTGQCPCRTGVVGVLCGQCEDGYWNLDGPSGCQPCSCDPVNSFSN
ICNKVMGQCPCRPEFGGRQCDECGENHFGNPDLQCISCDCNLEGTKRPSCDPETGECICR
TGVTGIFCDECALGYSSAFPACEECHPCTALWAESVTDVHRAAQKMRTFIPRHGKDLRPG
ESHPRHQMLQMHSKLDSLTNLTGLSLQKLEKVENLCVRIGKLKDAVDPNMILIDPSPLLD
TEMENIRQEFKKLLKSVKENVMELPHEEEEEDADELLDEIQKILTRFMLDEKRVKSATKA
LDDSVDIRQEVKHKLSVCGSRGDVTPVEKKITELSVVNLNRQICGRPGLDNCSGCGGALC
VLAPGQRKCGGSSCDGVVPISHHASEQSERAKEQLLSLPSRLEESKNKMNSMKQAAQDSK
DQAKNLHERINERLDTFEREKNKTRELIQQTKDYLMDEMVPIEDIEKMARAVLNIQLPRS
PAQIRSMINEINNLLSNTAHVQDELKKLEEPVRRTKDLLQKAQEVQERTKDMDWTEISRD
TYEAERAQDKANNDLETANRDRDTTKAQVQDIKDKLNKFETNLMNNRPEDLRNQIEALKK
KTEQNRAVAQEAQEAAQSAINTTMNLDNVMTFFEVLKQRTSNQSAQGEAGERLKKIIEEV
ENLKRQMEDKLRNIQGVEQRIQQLIRRKENKSAEVSQMLETVESLRQEISKRAEVYASCT
S
NT seq
5406 nt
NT seq
+upstream
nt +downstream
nt
atgatgaacatgttttttttctttcagaatccatcattgatcagagtctgtcagagaaac
atgatcaacatgatcttcatcttcatcatttttcttccagtgagtcagctccaggacctc
caggaccagtgtcctggcagctcgtgtagtcctcagctgggtgacctgatggtgggtcga
gctgctcagctctcagcctcatcaacctgtggtctggatggagctcagaactactgcatc
atcggatacttggaggaggaaaagaaatgtttctcatgtgactcacgtctgccgtacaat
cgctatagcaacccaaacagccaccgcatcgagaacatcatcacaacctttgaccttgaa
agaaaaacaaaatggtggcagtctgagaacggtgttcatcaggtcagtatccagttcaat
ctggagaccgtgttccagttcagccacttggttctcaccttcaagagtttccgtccagca
gccatgttggttgagcgatcgaaggattttggacaaacgtggaaagtttttcgttatttt
gcagaagactgttcacttcatttcccttcagtgtccaatgaggcggctgacagtgttgat
gacatcatctgtgacagtagatactctggatcagaaccgtccaccaatggagaggtggtg
ctgaaagcgctggatccaatatttgaaatacgaaacccgtatgcaccaaatatccaagat
ctgatcactttgactaatatccgggtgaacttcactcgtctcttcacgctcggtgacact
ctgctgagtcgaagacgcaggaaccctctgaataaatattactatgctctttacaacatg
gtagtccgaggaagctgcttctgtaacggacacgccagcaggtgcacacctgtggacgga
cgacatggggatgtcttcacccaaactggcatggttcatggtcgttgtgtttgtcaacac
aacacagctggaaacaactgtgagagatgtcaggactttcaccacgactccccctggagg
ccgggaggaggagacacagctggcatctgcaggaggtgtaactgtcatggtcactcagac
tcttgtcacttcgacgacattcattttgaagcgacgggtggcattagcggtggcgtgtgt
gacaactgccgccatgacaggatgggtcctcactgtgaacagtgtcgaccttttctattt
caggatcctcagagagcaatggacgaccctcacgcctgcataccttgtgactgtgatgca
gcaggagctcatggcggcggtctctgtgaagctcagactggtcagtgtctctgtaaagaa
aacgtggagggtcgacgctgcgagcactgcaaacatggcttcttcggcctgaggcaggac
gacccggccggttgtcaggtgtgcaggtgtcatgctttgggaagtgttgggtcatgtgat
cagctgacaggaagttgtgaatgtgacagtttggcgagcggcccgctgtgtgatcgatgt
ctggaaggtttctggggtttaggaaactcagcgatcagatgttcgccatgtgactgtgac
gtcggaggagctcaaagcatcatgtgttctccagaggatggacagtgtagctgtttacaa
aacatgattggtcgacgctgctctgaccccgcccctggtttcttcctaccttcacttgac
tacttcctgtatgaggcagagctcgcagctccacttcctggaggaagccgttcttctact
gatgctccatcatcttcttcttctctgttgaatccaggtgtgttacctgagtgtgagaaa
tcttacagagagcagggttttgactttaaattcaccgacggacgagtggttttggttcgg
aggactcgtcgactcacccgcaggaggagacaggggcagattatcccccgtcagaagaca
cgtgatcagccagtcacctggaccggcctgggattggtcagggtgttagagggggctggg
cttcgattcactgtggataacctacaatcatcaatgggttaccaattagtgattcacttt
gaaacagaggctctgtctgattggctggcttcagttagcatcatcatgatgtcaccaggt
gacggtggctgcagtaacaacccaacaggaagtgaaactctgattcttcctggaaactcc
agaggacgtggtctggattcttcagtgtgcctgaatgcaggaggtcgttactttgttgac
gtcgtctttaacaaacagtctggatctgatggatctcacatcctcattgactcgataggt
ctgattccaagaatagagtctgtccagaacttctgctctcaaagtgaccttgaatcgttc
cgccactttcgttgcatcggattggctgctgagctccaaccacatgactcactcccagaa
gtctgtgagggactgatcaagagcatgtcagcacgaatccacaacggagcagttccttgc
aggtgtaacttcataggctctctaggaccatcttgtagtaaactaggtgggttctgtgaa
tgtaaacccaatgtgatgggccgttgctgtgatacctgtgcaccaatgacatttgacttg
ggactcaacggctgcaaatcgtgtgggtgtgacgctcgtggttcagtggcgcagctgtgt
gatcaggtcagaggtcagtgtgcgtgtcggtcagccgcgacggggcgacgttgcaatcac
tgccacacaggattctgggatttccccttgtgtcgaccctgtgaatgtaacaatctatct
gagacgtgtgctgaagagaccggggagtgtctgaactgcagggaacacgccaccggatcg
cactgtgacagatgtgtggagggttactatggaaaccccgtctccagacagccctgtcag
ccctgcttgtgcccagacgttaagtacagtggacaattctttgccacttcctgccaacat
gacccacaatccctcagtctgacctgcatttgccaggaggggcacacaggttcacgatgc
aacagatgcagccctggtttctatggagacctgacgttgccaggtgcccgttgtgcagag
tgtccctgcaacaacaacatcgacctgggcgaccgcaacgcctgcaacagcctgacaggt
gaatgtctgggctgccgccacaacacggtgggaccacgctgccaaagctgcaaacttggt
tactatggaaacgctctggtccaagactgcaaagaatgctcctgtgaccggcgtgggacg
gaggtgactcgttgccctctggggagttcttgtttctgtgatccaagtacaggacaatgt
ccgtgcaggacgggtgtcgtgggagtcctctgtggccaatgtgaggatggatactggaac
ctggacggaccgtcaggatgtcagccctgcagctgtgatcctgtcaactccttctccaac
atctgcaacaaggtgatgggacagtgtccatgtcgtcctgagtttggagggagacaatgt
gacgaatgtggagaaaatcattttgggaatccagacctgcagtgtatctcttgtgactgt
aacctggagggaaccaagcgtccatcatgtgaccctgaaaccggggagtgtatctgtcga
actggagtcaccggtatcttctgtgatgagtgcgccctcggctacagctcggcattccca
gcgtgcgaggagtgccacccgtgcaccgctctctgggctgaaagtgtcacggatgtccat
cgagcagcacagaagatgagaaccttcatccctcgccacggcaaagacctgcggcctgga
gagagtcacccccggcaccagatgctgcagatgcactccaagctggacagcctcaccaat
ctgacaggactgtcattgcagaagttggagaaggtggaaaatctttgtgtgaggattggg
aagttgaaagatgccgttgatccaaacatgatcctgatcgatccgtctcctcttctcgac
accgaaatggaaaacattcgtcaggagtttaagaagctgctgaaaagtgtgaaggagaat
gtgatggagctcccacatgaagaagaagaagaagatgcggacgagctgctggacgagatc
cagaagattctgacacgtttcatgttggatgagaaaagagtaaaaagtgcaaccaaagct
ttagacgactccgtggacatcagacaggaagtgaaacacaaactgagcgtgtgcggcagc
agaggagacgtgacgccagtggagaagaagatcacagagctcagcgtggtcaacctaaac
cgacagatctgtggaagaccaggtctggacaactgttctggatgtggtggagctctgtgt
gttctggctccagggcaaaggaaatgtggaggttcaagctgtgacggagtcgtacccatc
agtcaccacgcttcagaacaatcagagagagcgaaggaacaactcctgtcactcccatcg
agacttgaggagtccaagaacaagatgaacagcatgaaacaggcagcccaggactccaaa
gaccaggctaaaaatctgcacgagcggatcaacgagcgactcgacaccttcgaaagagag
aagaacaaaaccagggagctgatccagcaaaccaaagactacctgatggatgagatggtt
cctattgaagacatcgagaaaatggccagagctgttctgaacatccagctgccacgatcc
cctgctcagatcagatcaatgatcaatgaaatcaataatctgctctcaaacactgcacat
gtccaggatgagctgaagaagctggaggagcctgtgaggagaaccaaggacctgctgcag
aaagctcaggaagtccaggagaggacaaaggacatggattggacagagatcagcagagac
acttatgaagctgagagagctcaggacaaagccaacaatgacctggaaacagccaacaga
gacagagacacgaccaaagctcaagtccaagatattaaagacaaattgaacaagtttgag
acgaatctgatgaataatcgacctgaagatctgagaaaccaaattgaagccctgaagaag
aaaacggaacaaaacagagcggtggcccaagaggctcaggaggctgctcagtcagccatt
aatacgacaatgaatttggacaatgtgatgacattttttgaggttttgaagcaaagaacc
tcgaatcagtcggctcagggtgaagctggagaacgactgaagaagattatagaggaggtg
gagaacttgaaaagacaaatggaggacaaactcagaaatatacaaggtgtggagcagagg
atccagcagttgatcagaagaaaagagaacaaatctgctgaagtttctcagatgttggaa
acagttgaatctttacgacaggaaatctccaaacgagccgaagtttacgcctcctgtact
tcataa
DBGET
integrated database retrieval system
