Hippoglossus stenolepis (Pacific halibut): 118110267
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Entry
118110267 CDS
T08308
Name
(RefSeq) LOW QUALITY PROTEIN: cyclic nucleotide-gated cation channel beta-1-like
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
118110267
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
hsp04040
]
118110267
Ion channels [BR:
hsp04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
118110267
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
cNMP_binding
Trypan_PARP
Stonustoxin_helical
SPESP1
Motif
Other DBs
NCBI-GeneID:
118110267
NCBI-ProteinID:
XP_047196034
LinkDB
All DBs
Position
5:complement(24318137..24338860)
Genome browser
AA seq
1606 aa
AA seq
DB search
MFNWVVKVVPQPPEAPDEPAKTPAVPPKIREVIPSVKSPPLKNTEEVSEDSQAHTGVLGW
LSNGFVSTLPQPSNSPRLGRANDSRTEDGERSGVIGWVAQGLTKVLPQPDDKYRETNNEE
HTEIYDVETMPDFDPLPHIPVVELVSDDEDADAESLTPQFPPNVVKWIKEIIPQPVILPP
GAVMIDNSPKVSRSRSSVDKVLSPPPESLSGISIDTDSKVSHVVGWFMSGLGLKLPQPAI
APKDEIECAAQVLQKASSKLKPDMVLEDVDSDNEGHHRPAPPSTLLTPPSPMTSQQQDTM
QQTHCSSLPVAPIPAQVQADANPVPVGLSENSTKISQEDAETQTGRWTPFIESIKREAED
SAFATMEERLLVERVEMTRVAEEVARHAAEMAVRQMASEGHSIRLSLDSAELLEEPDDAE
NEESLAEDDEDLEEAVVPTLLELELKEDAEPQRTSPSPPPSPEPVKISEPEPKPEPEPEP
EPESEPEPEPEAVTKTHEAKSNAQPVTQQPQKAEPIGEVTDADKAAEKEEEDTGDDCGAP
VSCDTFKSCLMRIPHTSECLGNINAFFKENGISPPKIPSMPKLPTQFSDVTQYLPSLPPE
LRQEFSQIRLTQIPRNISQYLTDCLPKSSEGSADSTLSSLAQSFSSIPQKLSQFPTRTQQ
YFSNVRNRLNSLMPQDAKKQQQQKQKKDKNPQDVELNRLVRHSPLSPPHHPHLRSRSPSP
SSPNGSTLELPNVPSYPRLPPIVSPPSKQLNATSRQLSGLSNPAFFIEDDSDVSPVRPAE
SSSLSIRPAVNVEDVDSDHERKGEGAGGGRGGRGGGEEQSAIPKILTPQDPKFTTLTVPV
TPSGGRQSKGDKDSSGRNHRTIWTKIRKLQSQSEDDEDEGNFPARAWPSQTSLHDTDDVL
KERPASSASQTSTVVNDRLQELVRMFKERTEKAKEKLIDPDSSDEDSTVPSPPQPAPAGQ
LLVGEKEAQAGPSGGRGGGGEEGGGVESEAEEEQARGCCNGKAPRCILACFHYRFPASID
AFTNLMYVLWMFLVSLAWNWNAWFIPVRWAFPYQTPDNIYYWLLTDYLCDLIYILDITIF
QPRLQFVRGGDIVSDKKDMRKNYMKTKRFKFDVASLVPLELFYFKTGINPLLRLPRLLKI
NSFFEFNERLEAILTKAYIYRVIRTTTYLLYCLHCNACLYYWGSAFTGLGSTKWVYNGEG
NSYIRCYYFAVKTLITIGGLPDPTTLFEIVFQLINYFVGVFAFSIMIGQMRDVVGAATAG
QTYYRTCMDNTIKYMSSYRIPKDVQNRVKTWYNYTWQSQGMLDEQELLCQLPDKMRLDIA
IDVNYSIVSKVPLFQGCDRQMIFDMLKSLRSVVYLPGDYVCKKGEVGREMYIIKAGEVQV
VGGPDGKTVFVTLRAGSVFGEISLLSVGGGNRRTANVIAHGFANLFILDKKDLNEILVHY
PESKKLLRKKARKMLTKGKKPEPKEEAKEAPPAPSTAVRPETPRLLRAALEMTEKSTGLK
GALAEVRERTNKSFISLHPSIASSMPPPSPTSSSGPDRDGDTPSPVFAGSATFRSASRCH
SNGSLGPRSASQCCSHADETLATDQSEEDVCEDEGSGAEKRKGRRS
NT seq
4821 nt
NT seq
+upstream
nt +downstream
nt
atgtttaactgggtggtgaaagtggtgccccaaccccccgaagctccagatgaacctgcc
aagacccctgctgttccccccaaaatcagagaggtcataccttcagtgaagagtcctcca
ctgaaaaacacagaggaagtttcagaagacagtcaggcccacactggagtattaggctgg
ttgtctaatgggttcgtcagcactctgccgcagccgtccaactcccctcgactcggcagg
gccaatgactccaggacagaagatggagaaaggtctggagtgatcggctgggtcgctcag
ggtctgaccaaggttctgcctcaacccgacgacaagtacagagagaccaacaacgaggag
cacaccgagatctatgatgttgaaacaatgccagatttcgatcccctcccacacatccca
gtggtggagctggtgtcagatgacgaggacgcagacgcagaaagtctgaccccccagttc
cccccgaatgtggtgaagtggataaaggagatcatccctcagccagttatactgccccct
ggtgctgttatgatagacaattcacccaaggtgtcccgctcccgctcctctgtggacaaa
gttctgtctccaccacctgagtctctcagtggaatctcaatcgatactgacagcaaagtg
tcccatgtggtcggctggttcatgtccggtctgggcctgaagctgcctcagcctgcgatt
gcccccaaagacgaaatcgagtgtgcagctcaagttcttcagaaagcttcatccaaactc
aaacctgacatggtcctagaagacgtggactcagacaacgagggtcatcacagacctgca
ccaccgtccacattgttgactcccccatcaccgatgacaagccagcagcaggacacgatg
cagcagacgcactgcagttcactgccggtggcgcccatcccggcccaggtgcaggctgat
gccaatccagtgccagtaggactttcagagaactcgacgaagatatctcaggaagatgcc
gagactcagacgggccgctggacgccgtttattgagagcatcaagagggaggctgaagat
tcggcctttgctaccatggaggaacgtctgctggtggagcgcgtggagatgacccgtgtg
gccgaggaggtggccaggcacgcggcggagatggccgtcagacagatggccagtgaggga
cactccatcaggctctcgctggacagtgcagagctgctggaggagcctgacgacgctgaa
aatgaagagagtcttgcagaggacgatgaagacctagaagaggctgtggtacctacctta
ttagaactagagctaaaggaggatgcagagccacagcggacgtccccctccccacctcca
agtcctgaacccgttaagatctctgaaccagagccaaaacctgagccagaacctgaacct
gaacctgaatcagaaccagaaccagaaccagaagcagtgactaagacccatgaagccaaa
tccaacgctcagcctgtgacgcagcagccacagaaagcagagccaatcggagaagtcact
gacgctgacaaagctgcagagaaagaggaggaagatactggggatgactgtggtgctcca
gtcagctgtgatacatttaagagctgcctgatgcgcattcctcacacctccgagtgcctc
ggcaatatcaacgcgttcttcaaagagaacggcatctcccccccgaaaataccctccatg
cccaagctacccacccagttctctgatgtgacccagtacttgccctccctcccccctgaa
ttacgccaggagttctcccagatcagactcacgcagatcccccgaaacatctcgcagtac
ctgaccgactgtttgcccaaaagctcggagggttcggccgactccactctgtccagtctc
gcccagagcttctcaagcatcccgcagaagctctcccagttccccacccggacgcagcag
tacttcagcaacgtccggaaccgcctcaacagccttatgcctcaagatgctaagaaacaa
caacagcaaaaacagaagaaagacaagaacccgcaagacgtagaactcaaccggctcgtc
cgacactcccctctctctcctcctcaccatcctcacctccggtcccgctccccgtctcca
tcctcccccaatggtagcaccctcgagttgcccaatgtgccgtcctatccgcgcctgcca
ccgattgtcagccccccgtcaaagcagctcaacgccacatcccgccagctgtcgggtctg
tccaacccggccttcttcatcgaagatgactcagacgtttcgccagtcagacccgcagag
agctccagcctcagcattcgtccagccgtcaatgtggaggacgtggactcagaccatgag
agaaaaggagaaggagcaggaggaggaagaggaggaagaggaggaggggaggaacagagt
gctatccccaaaatcctcaccccacaggaccccaaatttacaaccctcactgtccctgtg
accccgtctggaggtcgtcagagtaaaggagataaagacagtagtggaaggaatcatagg
accatctggacaaagatcaggaagcttcaatctcaaagtgaagatgacgaggatgaagga
aacttcccagccagggcctggcccagccagaccagcctgcacgacacagatgacgttctg
aaagaacgtccggcgtcctcggccagtcagaccagcacggtggtgaacgatcggttgcag
gagctggtgcggatgtttaaagagagaacggagaaggccaaggagaaactcattgaccct
gacagctcagacgaagacagcaccgtcccctcacctcctcagccggctcctgcagggcag
ctgctggtgggagagaaggaggcacaggcaggtccatcaggaggaagaggaggaggagga
gaagaaggaggaggagtggagagtgaggcggaggaggagcaggcgaggggctgctgcaat
gggaaagctcctcggtgcattcttgcctgttttcactatcgtttccctgccagcatcgac
gccttcaccaacctgatgtatgtgctgtggatgttcctggtttctctcgcgtggaactgg
aacgcctggttcatccccgtgcgctgggccttcccctatcagactccggacaacatttac
tactggctgctgaccgactacctgtgtgacctcatctacatcctggacatcaccatcttc
cagccacgtctgcagtttgttcgtgggggggacatcgtgagcgacaaaaaggacatgaga
aagaattacatgaagaccaaacgcttcaagtttgatgtcgccagcctcgttcccctggag
ctcttctacttcaagaccggcatcaaccccctgctccgtttaccacggctgctgaagatc
aactccttcttcgagttcaacgagcgtctggaggccatcttgactaaagcctacatctac
agggtgatccgtaccaccacctatcttctgtactgtctccactgtaacgcctgtctctac
tactggggctcggccttcacaggactgggttccactaagtgggtttacaatggagagggc
aacagttacattcgctgttactactttgcggtgaagaccctgatcaccatcggaggtcta
ccagaccccaccaccctgtttgagatcgtctttcaactcatcaactactttgttggagtc
tttgccttctctatcatgataggacagatgcgtgatgtggtcggtgcagccaccgcgggt
cagacctactaccgcacgtgcatggacaacactattaaatacatgtcgtcataccgcatc
cctaaagacgtccagaaccgcgtgaagacctggtacaactacacctggcagtctcaaggc
atgctggacgagcaggagctgctgtgtcagctgccggataaaatgcgtctggacattgct
atagatgtcaactactccatcgtgagcaaagtcccactgttccagggttgtgacagacag
atgatctttgatatgctgaaaagccttcgctctgtcgtctacctgccgggagactacgtc
tgcaagaagggtgaggtggggcgggagatgtacatcattaaagcgggggaggtgcaggtg
gttgggggacctgatgggaagacggtgttcgtcactctcagagcaggatccgtttttgga
gagatcagtttgctttcagtaggcgggggtaataggcgcacagccaatgtgattgctcat
ggatttgccaatctcttcatcctggacaagaaagacctgaacgagatcctggtccactac
cccgagtccaagaaactgctccgcaagaaggccaggaagatgctgaccaagggaaagaaa
cctgagcccaaagaagaggcgaaggaagcacctcctgcaccgtcgactgccgtcaggccg
gagactcccagactgctgagagccgccctggagatgaccgagaagtcgactggactgaaa
ggagctctggctgaagtcagagagaggaccaacaagtccttcatctcattacatccctcc
atcgcttcctccatgcctcctccgtctcccacctccagctctggacccgacagagacggg
gacacgccctcacccgtctttgccggctctgcgacattccgctctgcttcccgctgccat
agcaacggctctttggggcctcgctccgcatcacagtgctgcagccacgcagacgaaacg
ctcgccacggaccaaagcgaggaggacgtctgtgaggacgaagggagcggggccgagaag
aggaaaggtcggaggagttag
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