Hippoglossus stenolepis (Pacific halibut): 118111041
Help
Entry
118111041 CDS
T08308
Name
(RefSeq) dihydropyridine-sensitive L-type skeletal muscle calcium channel subunit alpha-1 isoform X1
KO
K04857
voltage-dependent calcium channel L type alpha-1S
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04010
MAPK signaling pathway
hsp04020
Calcium signaling pathway
hsp04260
Cardiac muscle contraction
hsp04261
Adrenergic signaling in cardiomyocytes
hsp04270
Vascular smooth muscle contraction
hsp04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
118111041
04020 Calcium signaling pathway
118111041
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
118111041
09153 Circulatory system
04260 Cardiac muscle contraction
118111041
04261 Adrenergic signaling in cardiomyocytes
118111041
04270 Vascular smooth muscle contraction
118111041
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
hsp04040
]
118111041
Ion channels [BR:
hsp04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
118111041
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
CAC1F_C
Motif
Other DBs
NCBI-GeneID:
118111041
NCBI-ProteinID:
XP_035015202
LinkDB
All DBs
Position
6:13284321..13306906
Genome browser
AA seq
1877 aa
AA seq
DB search
MASNADAAKPVIMNEEELKRKQREKLKKLQATGGNPRPARTLFLFGLKNPFRKACINIVE
WKTFEIIILLTIFANCVALAVFLPMPEEDSNNTNENLESLEYIFLIIFTLECFLKIVAYG
LFFHEGAYLRNCWNILDFVIVFMGLFTFALDTIHLIADMPVEKGGGFDMKALRAFRVLRP
LRLVSGVPSLQVVMNSILKAMLPLLHIALLVFLLVTIYAIMGLELFKCKMHKTCYYTGTN
IYATAEAELPAPCAQAGNGRRCLINGTECRPGWEGPNNGITHFDNIGFAMLTVYQCITME
GWTKVLYWVNDAIGYEWPWVYFVPLILIGSFFVLNLVLGVLSGEFTKEREKARSRGEFQK
LRERQQLDEDLHGYMEWITHAEVLDADREGKGLLPLTNGDSDADSLYDLEGKSRVIYYYR
LARRWNRFFRMKCLVYVKTRSFYWLVMFLVLLNTLTIATEYHHQSDKLTSLQDVASRVLL
VLFVIEMFVKMYALGPRAYFMSLFNRFDFFVVLCGILEMIMMSVGSVAPLGFSVLRCIRL
LRILKVTKYWTSLSNLVASLLNSVRSIASLLLLLFLFIVIFSLLGMQVFGGKFNFPYHRP
SRSNFDNFPQALISVFQILTGEEWTTIMYNGIMAYGGPVIPGILVAIYFIVLFVCGNYIL
LNVFLAIAVDNLAEAESLTSAQKEKAEEKLKRRLLRSKMPDKTDEERERIAKKLAEQRAK
MEGMPTTAKLKIDEFESNVNEVKDPFPPADFPGDDEEEEPEIPISPRPRPMADLQLKEEA
VPLPEASSFFIFGPQNKFRKLCYKIINASSFTNLILLFILLSSISLAAEDPIDPKSYRNK
VMVRSSMTQQTVTFERRPRLITILLSVFFFQILAYADIVFTTVFTIEIVLKMTVYGAFMH
TGSFCRNSFNILDLLVVSVSLLSMGMESSAISVVKILRVLRVLRPLRAINRAKGLKHVVQ
CVFVAIKTIGNIVLVTMLLNFMFACIGVQLFKGKFYSCTDPSKMTGEECQGSFLKPMENS
LQDTVLAEREWLNSDFNFDNVLNGMLALFTVSTFEGWPKLLYRAIDSDAEDMGPIFNNRV
DVSIYFIVYIILIAFFMMNIFVGFVIVTFQEQGEQEYKNCELDKNQRQCVQYALKARPLR
CYIPKNPYQYRVWYIVTSCYFEYLMFFLIMLNTLCLGMQHCNQSDHVTKLSDMLNLIFTV
LFTVEMILKLMAFKARGYFGDPWNVFDFIIVIGSVVDVILSEVDTALASSGGLYCLHGCA
ETNPMQVIAASENASVSITFFRLFRVMRLVKLLNRSEGIRNLLWTFIKSFQALPHVALLI
IMLFFIYAVIGMQIFGKVALVDGTQVNRNNNFQTFPQAVLMLFRCATGEAWQDVMMASMY
GKKCDPKSDFLPGEEFTCGSNFAVFYFLSFYCLCAFLILNLFVAVIMDNFDYLTRDWSLL
GPHHLDEFKKIWAEYDPEATGRIKHLDVVTLLRRIQPPLGFGKFCPHRAACKRLVGMNMP
LNSDGTVTFNATLFALVRTALKIKTEGNFEQANEELRAIIKKIWKRTSMKLLDQVIPPIG
DDEVTVGKFYATFLLQDCLRKFLKRQEEYYGYRPTKKNASGPEIQAGLRSIDEETAPEMH
RTISGDLQNEEELDRAMEEAGEEGIYQRTHGLFGNRVDSFSSEPTNAQSPQMTSQRPLKF
SDSQPEPSPDFPTTEFFPSATRNNTNNNAFADFSFEREGSPVEFSNPSEDAEPGNRRSWS
IPVRTDRTQVPYDPNYGDNQSQSSHTAADQLVHEALVKGGLASLARDGDFVSASKQEMAD
AMRIPMAEMEGMARGILNERSGSMTSVKKRRAVPEPPSGPSVAKQATRQPDPAVRRKRRP
IPLVPSVPEQAEADSEV
NT seq
5634 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccaacgcagatgcggccaagccggtcatcatgaatgaagaggagctgaagcgg
aagcagagggagaagctgaagaagctgcaggccacggggggcaaccctcgaccggcgaga
accctcttcctcttcggactcaagaatcccttccgcaaggcctgcattaacatcgtagag
tggaaaacctttgagatcatcatcttattgaccatctttgcaaactgtgtggctctggct
gtgttcctgcccatgcctgaagaagatagtaataacaccaacgaaaacttggagagtttg
gagtatatcttcctgatcatcttcacgttagagtgctttctgaagatagtggcgtatggg
ctcttcttccatgaaggcgcctatttacggaactgttggaacatattggactttgtcatc
gtcttcatgggactcttcacctttgctttggatacgatccatttgatagcagacatgcca
gtggagaagggtggggggtttgacatgaaggcactgagagccttcagagtgctgcgaccc
ctgcgcctcgtctctggagtccccagcctgcaggtggtgatgaactccatcctcaaggcc
atgctgcctctgctgcacatcgccctgctcgtctttttactggtcaccatctatgccatc
atgggactggagctcttcaagtgcaaaatgcataagacctgttactacactggcacaaat
atctatgctacagcagaggctgagctgcctgctccctgcgctcaggccggtaacggacgc
cgttgcctcatcaacggcacggagtgtcggccaggctgggaaggtcccaacaatggcatc
acccactttgacaacattggttttgccatgttgactgtctaccagtgtatcaccatggag
ggatggaccaaagtgctctactgggtcaatgatgccataggatacgaatggccctgggtc
tactttgttcccctcatcctgattggttccttcttcgtgctaaacctggttctgggtgtg
ctcagcggagagtttaccaaagagagagaaaaggcaaggtcacgtggagagtttcagaag
ttgcgagagcgtcagcagctggatgaagacctgcatggctacatggagtggatcactcat
gctgaagtcctggatgccgatcgcgagggcaaaggtctgctgcctttgaccaacggggac
tctgacgcagacagcctgtatgacctggagggcaagagtcgagtcatctactattaccgc
ttggcccgtcgctggaatcgcttcttcaggatgaagtgcctggtgtatgtgaaaaccagg
agcttttactggttggtgatgttcctcgttttactcaacaccctgaccatagcgaccgag
taccaccaccagtctgacaagctcacttccctacaagatgttgccagtcgtgtgctgctg
gtgctgtttgtcatcgagatgtttgtgaagatgtatgctctgggtcctagagcctatttc
atgtctctctttaaccgctttgacttcttcgtggtgctgtgcggtatcctggagatgatc
atgatgtctgtaggatccgtggcccctctgggtttctcggtgctcaggtgtattcggctg
ctgaggatcctcaaagtcacaaagtactggacctctctgagtaatcttgtggcctccctc
ctcaactctgtccgctccattgcctccctgctcctcctcctcttcctcttcatcgtcatc
ttctcgctcctcggtatgcaggtgtttggggggaaattcaactttccctaccacagaccc
agtcgcagtaactttgacaatttccctcaggccctcatcagtgtgttccagatcctcaca
ggagaggagtggaccaccatcatgtataacggcatcatggcctatggagggcctgtcatc
cctggcatcctggtcgccatctacttcatcgtcctctttgtctgtggaaactatatcctc
ctcaatgtcttcttggccatcgccgtcgacaacctggctgaggctgagagtctgacttcg
gcgcagaaagaaaaggcagaggagaagttgaagaggaggttactaaggtccaaaatgcct
gacaagactgatgaggagagggagcggattgctaagaaactggcagagcagagagccaag
atggagggcatgcccaccacagccaagctcaaaattgatgaatttgagtccaacgtcaat
gaagtgaaagacccattcccacctgccgacttcccaggtgatgacgaggaggaagagccc
gaaatccccatcagccctcggccccgaccgatggcggacctgcagctgaaggaagaagcg
gttccattgcctgaagccagctccttcttcatctttggccctcagaacaagttccgaaag
ttgtgctacaagatcatcaacgcctcgtccttcaccaacttgatcctcctgttcatcctg
ctgtcctccatctccctggcagcggaggaccccatcgatcccaagtcctacagaaacaag
gtgatggtcagatccagcatgacacaacagacagtaacttttgagagaaggccacgtttg
ataacaatcctgctgtctgtgtttttcttccagatcttggcctatgctgacatcgtcttc
acaaccgtgttcaccattgagattgtgctcaagatgacagtgtacggagcgttcatgcac
acaggctctttctgccgtaactccttcaacatcctggatctgcttgtggtgtctgtctcc
ctgctgtctatgggaatggaatccagtgccatctctgtggtgaagattctcagggtgttg
agggtgctcaggcctctcagggccatcaaccgagctaaaggcttaaagcatgttgtccag
tgtgtgtttgtcgccatcaaaaccatcggaaacatcgtcctggtcaccatgctgctgaat
ttcatgtttgcctgtatcggggtacaactctttaagggtaaattctacagctgcacagac
ccatccaaaatgaccggggaggaatgccagggatccttcttgaagcccatggagaattcc
ctgcaagacacagtgctggccgagagagagtggctcaacagtgacttcaactttgacaat
gtgctcaacggcatgctggctctcttcactgtctccacatttgagggctggccaaaactg
ttgtacagagccatcgattcagacgcagaggacatgggtcccatcttcaacaaccgcgtg
gacgtgtccatctacttcatcgtctacatcatcctcatcgccttcttcatgatgaacatc
ttcgtgggcttcgtcattgtcaccttccaggagcagggcgagcaggagtataagaactgt
gagctggacaagaaccagcgtcagtgtgtgcagtacgccctgaaggctcgtcctctgagg
tgttacatccccaaaaacccctaccagtacagggtctggtacatcgtcacctcctgctac
tttgagtacctcatgttcttcctaatcatgctcaacaccttgtgtctggggatgcagcac
tgtaaccagtccgaccatgtgaccaagctgtcagacatgctgaacttgatcttcaccgtg
ctcttcaccgtcgagatgattctcaagctcatggccttcaaagcgagaggctacttcgga
gacccctggaacgtctttgatttcattatcgtcatcggtagcgtcgttgatgtcatcctg
agtgaagtcgatactgccctggcctccagtggaggactgtactgtctccatggctgtgct
gagacgaatcctatgcaagtaattgcggcttcagaaaacgcttcagtttccatcacgttc
ttccgactcttccgtgtcatgcgtctggtcaagctgctgaaccgctcggagggcatccgt
aacctgctctggactttcatcaagtccttccaggctctccctcacgtagctctgctcatc
atcatgctcttctttatctacgctgtcatcgggatgcagatcttcggaaaggtcgcctta
gtggacggcacccaggtcaaccgcaacaacaacttccagacattccctcaggctgttctg
atgttattccgatgtgcaactggagaggcttggcaggacgtcatgatggcttcgatgtac
gggaagaagtgtgaccctaagtctgacttcctgccaggagaggagttcacctgcgggtcc
aacttcgctgtcttctacttccttagcttctactgtctctgtgcattcttgatcctcaac
ctgtttgtcgctgtcatcatggataactttgactacctgacccgtgattggtccctgctc
ggtcctcatcatctggatgagtttaagaagatctgggctgaatacgaccctgaagcaact
gggagaattaaacatctggatgtggtgacgctgctgcgacgcatccagcctccactgggc
tttggcaagttctgtcctcatcgagctgcgtgcaagcgtttggttggtatgaacatgcct
ctcaacagtgacggcacggtcaccttcaacgccaccctgtttgctctggtcagaactgct
ctcaagatcaaaactgaaggtaatttcgagcaggccaatgaggagctgcgggccattata
aagaaaatctggaaacgcaccagtatgaaactcttagaccaggtcatccccccgatagga
gatgatgaggtgactgtggggaaattctacgccaccttcctgctccaggactgtttacgc
aaattcttgaagcggcaggaggagtattacggctacaggcccacgaagaagaacgcctca
ggcccagagatccaggcggggctgaggagtatcgatgaagagacagctccagagatgcac
aggaccatttcaggagacctgcagaatgaggaagagttggacagagccatggaggaggct
ggagaagagggaatttaccagcgcacacacggtctgttcggtaaccgggtggactcattc
tcctctgaacccaccaacgctcagtccccacagatgaccagtcagcggcctctcaagttc
tccgacagccaacctgagccttcaccagacttccccactaccgaatttttcccctcagcc
acgaggaacaacactaacaacaacgccttcgcagatttttcatttgaaagagagggcagc
cccgtagagttttccaatcccagtgaggacgcagagccaggtaacaggcgctcctggagc
atccctgtgagaacagacagaacacaggtcccgtatgacccgaactatggtgacaatcag
agtcagagctcccacactgcagccgaccagctcgtccacgaggctctagtgaagggcggt
ctcgcctccctggctagagacggtgactttgtgtctgcctctaagcaggagatggctgat
gccatgcgtatccccatggccgagatggaaggaatggctcggggcatcctgaacgaacgc
tccggcagtatgacctctgtcaaaaagagacgcgccgtccccgaacctccttctggccca
tctgtggccaaacaggcaacaaggcagccagaccccgctgtgaggaggaagagacgtccc
atccccctggttccctctgtacctgagcaggcagaggccgactctgaagtttag
DBGET
integrated database retrieval system
