Hippoglossus stenolepis (Pacific halibut): 118111138
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Entry
118111138 CDS
T08308
Symbol
scn8aa
Name
(RefSeq) sodium channel, voltage gated, type VIII, alpha subunit a isoform X3
KO
K04840
voltage-gated sodium channel type VIII alpha
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
118111138 (scn8aa)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
hsp04040
]
118111138 (scn8aa)
Ion channels [BR:
hsp04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
118111138 (scn8aa)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
PKD_channel
IQ_SCN5A_C
GPHH
Neur_chan_memb
FraC
HpsJ
Motif
Other DBs
NCBI-GeneID:
118111138
NCBI-ProteinID:
XP_035015381
LinkDB
All DBs
Position
6:complement(13753540..13797982)
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AA seq
1967 aa
AA seq
DB search
MALPLIAPPGPNSYKKFTVESLAIIEQRIAEEKNKKPPKQDSSYRDDDDENKPRPNTDLE
AGRSLPYIYGDIPKGMVAIPLEDLDPFYLNSQKTFIVLNRGKTIFRFSATPALYFISPLN
PVRRVAIKILIHSLFSMIIMCTILTNCIFMTFSDPPEWSKQVEYTFTGIYTFESLVKITA
RGFCIDGFTFLRDPWNWLDFMVISMAYITEFVDLGNVSALRTFRVLRALKTISVIPGLKT
IVGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRHKCVVWPINITENYMSSSTKG
FDWKEYIMNDTNFYFLPGQLDALLCGNSSDSGRCPEGFTCMKAGRNPNYGYTSFDSFGWA
FLALFRLMTQDFWENLYMLTLRAAGKTYMIFFVLVIFVGSFYLVNLILAVVAMAYEEQNQ
ATMEEAIRKEEEFKAMLDQLKRQQEDAQTAAMATSAGTVSEDAVEDDGGGRLSCSSSEMS
KLSSKSAKERRNRKKKWRQKEQDKEKGDSEKFVKSESDDGSKRSRFRFPDNRLGRKSSIM
NQSLLSIPGSPFLSRHNSKSSIFSFKGRNKDVGSENEFADDEHSTVEECEERRGSLFSPY
RRNSYSGFHGKRNSTVDCNGVVSLIGPGPGGRLLPEVKIDKAATDDSPTTEVEVKKKLSG
SLMVSVDQLNTSFGRKERANSVMSVITNTLVEELEESQRKCPPCWYKFSNTFLIWECSPN
WIKIKEIVNLIVMDPFVDLAITICIVLNTLFMAMEHYPMTPDFEHMLSVGNLVFTGIFAG
EMLFKLVAMDPYYYFQEAWNCFDGFIVTLSLVELALADVEGLSVLRSFRLLRVFKLAKSW
PTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKDCVCKIAKECELPRWH
MNDFFHSFLIVFRVLCGEWIETMWDCMEVAGQGMCLLVFMMVMVIGNLVVLNLFLALLLS
SFSADNLAATDDDGEPNNLQISVKRIKVGIAWIKVKMRILMATLLKKPPMEDEQKPLDDM
YDKKLNCIANHTGVDINRDLDYAKNGNGTTSGIGSSVGKYMIDEDHMSFIHNPNLTVCVP
IAVGESDFENLNTEDFSSESENENSKELDDTSSSEGSTIDIKPDVVEEVVVEPVEEYLEP
EACWTDGCVAKYKCCDVPINVGWGKPWWFLRKTCFLIVEHNWFETLIIFMILLSSGALAF
EDVYIEQRKTIRIILEYADRVFTYIFILEMLLKWVAYGFVKYFTNAWCWLDFFIVDVSIV
SLVANALGYSDLGPIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIF
WLIFSIMGVNLFAGKYYYCFNQTSEEYFSVDVVNNKTQCEALIQQNFTEVRWKNVKINFD
NVGAGYLALLQVATFKGWMDIMYAAVDSREVEDQPDYEVNIYMYIYFVVFIIFGSFFTLN
LFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPQNMIQGMVFD
FVTQQVFDISIMILICLNMVTMMVETDDQSDDTENVLYWVNFIFIVVFTTEFLLKLFALR
HYYFTNGWNIFDVVVVILSIVGMFLADIIEKYFVSPTLFRVIRLARIGRILRLIKGAKGI
RTLLFALMMSLPALFNIGLLLFLVMFIFSIFGMSNFGYVKHGAGVDDLYNFETFGNSMII
LFMITTSAGWDGLLLPILNYPPDCNPRYENPGTSVKGDCGNPSVGIFFFVMYIIISFLIV
VNMYIAIILENFSVATEESADPLSEDDFETFYEIWEKFDPTASQFITFAKLSDFADALEH
PLRVPKPNTIELIAMDMPMVSGDRIHCLDILFAFTKRVLGDSGELDMLRQQMEERFVQAN
PSKVSYEPITTTLRRKQEDVSARTIQNAYRCHLIRRGIIFKRRTFTNNKLENGGTNQEKK
ESTPSTASLPSYDSVTKPDKEKQDENKEEWARKEKDKNQKDEWESKC
NT seq
5904 nt
NT seq
+upstream
nt +downstream
nt
atggctttaccccttattgcaccgccaggacctaatagctacaagaagtttactgtggaa
tctttggcaatcattgagcagcgcatcgctgaggagaaaaacaagaagccacccaagcag
gacagcagctaccgtgacgacgatgacgagaacaagccaaggcccaacaccgacctggag
gctgggaggagcctgccctacatctacggggacatccctaaaggaatggtggctatacca
ttggaggacctggacccattctacctgaactctcaaaaaacatttatagtgctaaataga
gggaagacaatcttccgttttagtgccacacctgccttgtacttcataagtcctttaaat
ccggttaggcgagtagctattaaaattttgatacattctcttttcagcatgatcataatg
tgtactattttgaccaactgtatattcatgacctttagtgatcctcccgagtggtcaaaa
caagtagagtacacattcacaggaatttatacatttgagtcgcttgtaaaaatcacggca
cgaggattctgtatagacgggtttacattcctaagagatccatggaactggctggatttc
atggtcatttcgatggcatatataacagagtttgtggacctgggcaatgtatctgcgctg
agaacattcagagttctccgagcattgaaaactatctctgtcattccaggactgaagacc
atcgtcggcgccctgatccagtctgtgaagaagctctcggatgtgatgatcctgaccgtc
ttctgcctgagcgtcttcgccctcatcggcctccagctcttcatgggcaacttgcggcac
aagtgtgtggtctggccgatcaacatcaccgagaactacatgtccagcagcaccaagggc
tttgactggaaagagtacatcatgaacgacaccaacttctacttcctgcctggccagtta
gacgctcttctctgtgggaacagctccgactctggccgctgcccggagggcttcacatgc
atgaaagctgggaggaatccgaactatggctacaccagctttgacagcttcggctgggcc
ttcctggctctcttccgactcatgacacaggacttctgggaaaacctctacatgctgact
ctgagggcggcggggaagacctacatgatcttctttgtgctggtgatctttgtgggatct
ttctacttggtgaatctcatcctggctgtggtggccatggcttatgaggagcagaaccag
gccaccatggaggaggccattcgtaaggaggaggaattcaaggccatgctggatcagctc
aagagacagcaggaggacgcccagactgctgccatggcaacctctgcaggcacagtgtca
gaggatgcggtagaggatgacggaggggggcgtctctcgtgcagctcctctgagatgtcg
aaactcagctccaagagcgccaaagagcgtcgcaaccgtaagaagaaatggcggcagaaa
gagcaggataaggagaaaggcgacagcgagaagtttgtcaagtcagagtcagatgacggc
agcaagaggagccgcttccgtttccctgataaccggctgggtcgaaagtcttccattatg
aaccagtccctactcagcatacccggctcgccgttcctgtcccgccacaacagtaagagc
agcatcttcagtttcaaggggcgcaacaaggacgtgggttcagagaacgagttcgccgac
gatgagcacagcacggtcgaggagtgcgaggagcgccggggctccctgttcagcccgtac
cggcggaacagctacagcggcttccacggcaagaggaacagcacggtggattgcaatggc
gtggtgtcgctcatcggccctgggcccggtggacgccttctgcctgaggtgaaaatagat
aaggcagctactgacgacagtccgactactgaggttgaggtgaagaagaagctgtcgggc
tccctgatggtgtctgtggaccagctcaatacctcctttgggcggaaagagcgggccaac
agtgtcatgagcgtcattaccaacacactagtggaggaactggaggagtctcagcgcaag
tgtccgccttgctggtataagttttctaacacattcctgatctgggagtgctcccccaat
tggattaagatcaaggagattgtgaacctgatagtcatggaccccttcgtggatttagcc
atcaccatctgcatcgtcctcaacaccctcttcatggccatggagcactaccccatgacc
cccgactttgagcacatgctgtctgtgggcaatctggttttcacggggatctttgcaggg
gagatgcttttcaagctggttgctatggatccatattactacttccaggaagcctggaac
tgttttgatggattcattgtgacgctgagtttagtggagctggctctggctgatgtcgaa
ggcctgtctgtgctgcggtcattccgattgctgagagtgtttaagctggccaagtcatgg
ccaaccctcaacatgctgatcaagatcattggtaactcggtgggagccctcgggaacttg
actctggtgctggccattatcgtcttcatctttgctgtggtgggcatgcagctgtttggt
aagagctacaaagactgtgtgtgcaagatagccaaggaatgtgagctgccccgctggcac
atgaacgacttcttccactccttcctgatcgtcttccgggtgctgtgcggcgagtggatc
gagaccatgtgggactgcatggaagtggcgggccagggcatgtgcctcctcgtcttcatg
atggtcatggtcatcggcaacctggtggtgttgaacttgttccttgccttgttgctgagc
tcgttcagcgccgacaacttggctgcgacagatgatgacggcgagcccaacaacctgcag
atttcagtcaagcgcataaaggtagggatcgcatggataaaagtgaagatgcggatactg
atggccaccctgctaaagaaaccaccgatggaggatgagcagaagcctttggacgacatg
tacgacaagaagctgaactgcatcgctaatcacactggggtggacatcaaccgcgacctg
gactacgccaagaacggcaacggcaccactagcggtataggcagcagcgtggggaagtac
atgatcgacgaggaccacatgtctttcatccacaacccaaatctgaccgtctgcgtgccc
atagctgtgggagagtccgactttgagaacctcaacacggaggacttcagtagcgagtcg
gaaaatgagaacagcaaagagctggatgacaccagctcgtcagagggcagcaccatcgac
atcaagccagatgtggtggaggaggtggtagtggagccggtggaggaatacttggaacca
gaggcctgctggacagatggttgcgtggcaaagtataagtgctgtgacgttccgatcaac
gtgggctgggggaagccctggtggttcctgagaaaaacctgcttcctgattgtggagcac
aactggtttgaaaccctcatcatcttcatgatcctcctcagcagtggcgccctggccttt
gaggacgtgtacatcgagcagaggaagaccattcggatcattctggagtacgccgacagg
gttttcacctacatcttcatcctggagatgttgctgaagtgggtcgcctacggttttgtc
aagtacttcaccaacgcctggtgctggctggacttcttcattgtggatgtgtctatagtc
agccttgtagctaatgcgctgggctactccgatctagggcccattaaatcactcaggaca
ctaagggccttgagacccctcagagccttgtcacgttttgaagggatgagggtggtagtc
aacgccttggtgggtgccatcccttccattatgaatgtgttgctggtttgcctcatcttt
tggctgattttcagtatcatgggggtcaacctgtttgcgggcaagtactactactgtttc
aatcagacgtccgaggaatacttctcagttgacgtggtcaacaacaagacccagtgtgag
gccctcattcagcaaaactttactgaggtcaggtggaagaacgtcaagatcaactttgac
aatgtgggcgccggctacctcgccctgctgcaagtggccacgttcaaaggctggatggac
attatgtacgcggctgtggattccagagaggtggaagaccaaccagactacgaagtcaac
atctacatgtacatctactttgtggttttcatcatattcggctccttcttcaccctcaac
ctcttcattggtgtgatcattgacaacttcaaccagcaaaagaaaaagtttggaggtcag
gacatcttcatgacagaggaacagaagaagtactacaacgccatgaaaaaactggggtct
aaaaagccgcaaaagcctattcctcgaccacagaacatgatccagggaatggtgtttgac
ttcgtgacgcagcaggttttcgacatctccatcatgatactgatctgcctcaacatggtc
accatgatggtggaaacagacgatcagtcggacgatacggagaacgtcctctactgggtc
aacttcatcttcattgtagtcttcaccacagagttcctgcttaagctctttgcccttcgc
cactattacttcaccaacggctggaatattttcgacgtggtggtggtcatcctgtctatt
gttggtatgttcttggctgacatcattgagaagtactttgtgtcaccaaccctgttcagg
gtgatcaggctggctcgtatcggtcgtatcctccgtctgattaaaggagcgaagggcatc
cggacattgctctttgctttgatgatgtccctgccagccctgttcaacattggcttactg
ctcttcctggtcatgttcatcttctccatcttcggcatgtctaactttggctacgtgaag
cacggagcgggcgttgacgacctgtacaactttgaaacctttggcaacagcatgattatt
ctgtttatgatcactacgtcggctggatgggacggcttgctgctgccgatcctcaactac
ccaccagactgcaacccccgctacgagaaccccgggacatctgtgaagggggactgtggt
aatccctcagtggggatcttcttttttgtcatgtacatcatcatttctttcctgattgtg
gtcaacatgtacattgccatcatcttggagaacttcagtgtggctacagaagaaagtgct
gatccactcagtgaggacgactttgagaccttctacgagatctgggagaagtttgaccca
actgcctctcagttcatcactttcgccaagctgtctgactttgcagacgcattggagcat
ccacttcgcgtgccaaagcccaacactatagaactaattgccatggacatgcccatggtg
agtggcgaccgcattcactgcctggacatcctgtttgccttcacaaagcgtgtgctgggt
gacagtggtgagttggacatgctgaggcagcagatggaagagcgttttgtgcaagccaac
ccctccaaggtgtcgtatgaacccatcaccaccacactgcgccgcaaacaggaagatgtc
tctgccagaactatccagaacgcctaccgctgtcacctcatcaggcgtggcatcatcttc
aagcgccgcacttttacgaacaataagcttgaaaatggtgggaccaaccaggagaagaaa
gagagcacgccatccacagcctctctcccctcttacgacagcgtgaccaaacctgacaag
gagaagcaggatgaaaacaaggaggagtgggccaggaaagagaaggacaaaaaccaaaaa
gatgagtgggaatccaagtgttag
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