Hippoglossus stenolepis (Pacific halibut): 118111194
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Entry
118111194 CDS
T08308
Symbol
hdac6
Name
(RefSeq) LOW QUALITY PROTEIN: histone deacetylase 6
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
hsp01009
]
118111194 (hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsp03019
]
118111194 (hdac6)
04131 Membrane trafficking [BR:
hsp04131
]
118111194 (hdac6)
03036 Chromosome and associated proteins [BR:
hsp03036
]
118111194 (hdac6)
Enzymes [BR:
hsp01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
118111194 (hdac6)
Protein phosphatases and associated proteins [BR:
hsp01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
118111194 (hdac6)
Messenger RNA biogenesis [BR:
hsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
118111194 (hdac6)
Membrane trafficking [BR:
hsp04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
118111194 (hdac6)
Chromosome and associated proteins [BR:
hsp03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
118111194 (hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
118111194
NCBI-ProteinID:
XP_047196344
LinkDB
All DBs
Position
6:1726244..1737023
Genome browser
AA seq
1095 aa
AA seq
DB search
MKSEPDPPGSGPKSVRRSPRPSPQNEGKETRRGGESLKEMKRRGKVDRSRDQMEDELNNR
LKTLDLSSRSSVSGTGLVYSDIFTHHQNLWEPSHVESPHRVTSIMKELETQELLSHCIRV
EPREATEDELLLAHMKPYVDMIKSTQTMSESELHTLSEKYDSVYLHPESFKVCASAVGSV
LQLVDRVMTSELRNGFAVIRPPGHHAQANEPNGFCVFNSVAIAARYAQVKHSASRVLIVD
WDVHHGQGIQYLFQEDPSVLYFSVHRYEQGSFWPHLAESDGGFVGSGRAEGLTMNLAWDK
TGMTDADYITAFQQLLLPVAYEFQPQLVLVSAGFDAAAGDQKGECVSPQCFHVLTHLLMS
LAEGRLVLALEGGYNLQSTAEGVAACVRALLGGACPSLTPPTATSDSALQSLSRTVSAQY
PHWASLQVLGGVSLAEGSVIRAMTDEQSTEWPSSAPSVVTTTGLVYDERMMEHLNLWDRH
HPEQPQRIAKIFSKHQQLGLVDRCQRIPARLATEEELTMCHSKQHVKLIKSSSVMKSRDL
HKLGEEFNSIFFNNQSFHSAQLAAGGCFNXVERILRGEVSNGVAIVRPPGHHAETDSPCG
FCFFNTAALAARHAQKISHPAPLRVLILDWDVHHGNGTQHMFEDDDSVLYISLHRYDNGI
FFPSSEDAAPNRVGVAKGAGFNVNVAWSGGRMGDSDYLAAFHHVVMPIATEFNPGLVLVS
AGFDAARGDPLGGYHVTPEGYAHLTHLLMSLAGGRVLLVLEGGYNLSSISDSMALCTSML
LGDPPPSLVTPLPPPHHCAVATIIEVIRHHAPYWRSLRINIPESVRASLPSLKHRGKRSS
KGKGRKSEQSGTDRPPLPPAGAKDLMAEHSLDQLTQGLASLDISHTSVSHTPATSTPVGG
ARSKVRPSPEVTCEGEVKAESSSVAVCEQNQSADSTLPQTQIVVGDEAAGRAGGELEAAG
ACGWSKPQMCVELTCGGGTDESSLYVVDPLSWCPHLDSVKPLPSSGINIYMPCQDCGSEA
ENWICLTCYQVLCGRYVNEHMVTHGVVSEHPLVLSFSDLSVWCYRCESYVHNQVLFEAKN
AAHCAKFGEEIPPWS
NT seq
3288 nt
NT seq
+upstream
nt +downstream
nt
atgaagtctgaaccggatcctccaggatctggacctaagtcagtcagaagatctcctcgt
ccgtcccctcagaatgaaggaaaggagacaagaagaggaggagagagtctcaaggagatg
aagaggagaggaaaggtggatagaagcagagatcagatggaggacgagctaaacaacaga
ctgaagacactggacctgtccagcagatcctcagtcagtggtactggtcttgtttactct
gacatcttcactcatcatcagaacctgtgggaaccaagtcatgtagagagtccacacaga
gtgacgtccatcatgaaggagctggagacacaagagctgctgtctcactgcatcagagtg
gagcccagagaagctacagaggacgagctgcttctcgctcacatgaaaccttatgtggac
atgataaaatcgactcagacgatgtcagagagtgaactacacactctgtctgagaaatac
gactctgtttacctgcatcctgagtccttcaaggtgtgtgcctcggcggtgggttcggtg
ctacagctggttgatcgggtgatgacctctgaactcaggaatggattcgctgtcatcaga
cctccaggtcatcacgctcaggccaacgagccaaacggcttctgtgtgttcaacagcgtc
gccatcgctgctcgctacgctcaggtcaaacactcagccagcagagtgttgatagtggac
tgggatgtgcatcatggtcaggggatccagtacctgtttcaggaagaccccagtgtcctg
tacttcagcgtccacaggtacgagcagggatctttctggcctcacctggccgagtctgac
ggggggttcgtgggcagtggacgagctgaaggactaaccatgaacctggcctgggacaag
acggggatgactgatgctgattacatcactgcttttcaacaactgttgctgccggtcgcc
tacgagtttcagcctcagctcgttctggtctctgctggattcgatgctgcagccggagat
caaaagggggagtgtgtgagtcctcagtgtttccatgttctgactcacttgttgatgagt
ttggctgaaggtcgactcgttctggctctcgagggaggttataacctgcagtcgacagca
gagggcgttgcagcctgtgtcagagctctgctgggaggagcctgtccttctctgactccg
cccactgctacatctgacagtgccttgcagtcgctctctcggaccgttagtgctcagtat
ccacactgggcgagtctgcaggtgcttggaggcgtctcattggctgagggcagtgtcatc
agagcaatgacggatgagcagagtacggagtggcccagctccgccccctctgttgtcact
acaacaggtctggtttatgatgagaggatgatggagcatctgaacctgtgggaccgacat
cacccggagcaaccgcagagaatcgccaagatcttctctaaacaccagcagctcggattg
gtcgaccgctgccagcggataccagcgcgcctagcaacagaggaggagctgaccatgtgt
cacagtaagcaacatgtgaagctcattaaatcgtcgtcggtgatgaagtccagagatctt
cataaacttggagaagagtttaattcgattttcttcaacaaccagagttttcattctgct
cagcttgcggccggaggctgttttaacnctgtggagagaatcctgagaggagaggtgagt
aacggcgtggcgatcgtgcgacctcctggacatcacgcagagacagactctccatgtggc
ttctgcttctttaacacggcagcgctcgccgctcgccatgcccagaaaatctcccatcct
gccccactgagagtcctcatcctggactgggacgttcaccatggcaacgggacacaacac
atgttcgaggacgatgacagcgtcctgtacatctccctccatcgctatgacaacgggata
ttctttccatcgtcagaggacgccgccccaaaccgagtgggtgtggccaaaggggcaggg
tttaacgtcaacgtggcgtggagcggaggacggatgggcgactctgactacctcgctgct
tttcatcacgttgtcatgccgatagctaccgagtttaaccccggtctggtcctggtgtcg
gccgggttcgatgcagcgcggggtgacccgctaggcggatatcatgtgacccctgaggga
tacgcccacctcacacacctgctgatgtcactggccggggggcgggtcctcctcgtactg
gagggaggttacaacctgtcgtccatctctgactccatggcgttgtgcaccagcatgttg
ctaggagaccctcctccatcccttgtgaccccactcccccctcctcatcactgcgctgtg
gcaacaatcatcgaggtcatccgacaccacgccccctactggaggtccttgaggataaac
atcccagagtctgtgcgggcgtctctgccctccctgaagcatcgtgggaaacgtagttcg
aaaggaaaaggcagaaagtcagagcagagcggcacagacagacccccgctgccccctgca
ggagcgaaggacttaatggcggagcacagtcttgaccagctcactcagggattggccagt
ttagacatcagtcacacttcagtcagtcacacgcctgcaacgtccactccagtgggcggg
gccaggtcgaaggtccggcccagcccggaggtcacttgtgagggtgaagtaaaggcggag
tccagcagtgtagccgtatgtgagcagaaccaatcagcagacagcacactgccacagact
cagattgttgttggagacgaggctgctggaagagcggggggggagcttgaggcagcgggg
gcgtgtggttggtcgaagcctcagatgtgtgtggagctgacgtgtggaggaggaacagac
gaatcgtctctatacgtggtcgaccctctctcctggtgtcctcacctggactctgttaag
cccctcccctcctcaggtataaacatctacatgccgtgtcaggactgtggctctgaagct
gagaactggatctgtctcacctgctaccaggtgttgtgtggtcgttatgttaacgaacac
atggtgactcacggggtcgtgtctgaacatcctctggtcctgagcttctcggatctctct
gtgtggtgttaccggtgtgagtcctacgtccacaaccaggttctgtttgaagctaaaaat
gctgctcactgtgcgaagtttggagaagagatccctccatggagctga
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integrated database retrieval system
