Hippoglossus stenolepis (Pacific halibut): 118111288
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Entry
118111288 CDS
T08308
Symbol
prpf6
Name
(RefSeq) pre-mRNA-processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118111288 (prpf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hsp03041
]
118111288 (prpf6)
Spliceosome [BR:
hsp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
118111288 (prpf6)
Complex C
U5 SnRNP specific factors
118111288 (prpf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
TPR_16
Suf
HAT_PRP39_C
HAT_Syf1_CNRKL1_C
HAT_Syf1_CNRKL1_N
TPR_2
TPR_17
TPR_8
TPR_1
ARM_TT21_C
TPR_CcmH_CycH
T7SS_EccA1_N
ARM_TT21_5th
Mt_ATP-synt_B
Motif
Other DBs
NCBI-GeneID:
118111288
NCBI-ProteinID:
XP_035015621
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All DBs
Position
6:9965071..9976855
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AA seq
967 aa
AA seq
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MASSGPKQAPKMSKASQGGAGAAGANGATPATPLASPLMGKKKKPFLGMPAPLGYVPGLG
RGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQMKKNEEDEEDLNDTNYDEFNGYA
GSLFSSGPYEKDDEEADAIYAALDKRMDERRKERRELREKEEIEKYRMERPKIQQQFSDL
KRKLAEVSEEEWLSIPEVGDARNKRQRNPRYEKLTPVPDSFFSKHLQTGEKNTSVDPLQG
LAGLNTPYPGSMTPGLMTPGTGELDMRKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYL
TDLNSMIPTHGGDISDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMK
GTEMCPKSEDVWLEAARLQPGDTAKAVVAQAVRHMPQSVRIYIRAAELETDVRAKKRVLR
KALENVSKSVRLWKTAVELEEPEDARIMLSRAVECCPTSVELWLALARLETYENARRVLN
KARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITSLHANGVEINREQWIQDAEECD
KAGSVATCQAVIRAVIGIGIEEEDRKHTWMEDSDSCVSHGALECARAIYAHSLQVFPSKK
SVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAEDVPAARSILALA
FQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTARVFMKSVKLEWVLGNIEAA
QELCTEALKHYEDFPKLWMMRGQIEEQGENMDKAREAYNQGLKKCPHSTSLWLLLSHLEE
RVGQLTRARAILEKARLKNPQSPELWLDSVRLEFRAGLKNISNTLMAKALQECPNSGILW
AEAVFLEARPQRKTKSVDALKKCEHDPHVLLAVAKLFWSERKITKAREWFLRTVKIDPDL
GDAWGLFYKFELQHGTEEQQEEVRKRCENAEPRHGELWCAESKHVLNWQKKTGEILALVA
SKIKNTF
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atggcgagttctggtcctaaacaggcgcccaaaatgtccaaggcatcgcagggaggcgcc
ggggccgcgggggccaacggtgcgaccccggcaacacctctcgcctctccgctcatgggg
aaaaagaagaagcctttcctggggatgcccgctccgctcggctacgtccccggtctcggc
agaggtgcaactggtttcaccacccgatcagatattggtcctgctcgtgatgccaatgat
ccagtggatgatcggcatgcacccccagggaagaggacggttggggaccaaatgaaaaag
aacgaggaggatgaagaagatctcaatgataccaactatgatgagttcaatggatatgca
ggtagcttgttttccagtggaccctatgagaaagacgacgaagaagcagatgctatatat
gctgcactagacaagaggatggatgaaagacgcaaagaaagaagggagctgagagaaaag
gaagaaattgagaaatatcgtatggagcgacccaagatacagcagcagttttcagatcta
aagagaaagttggcagaggtgtcagaagaagagtggctcagcatccctgaggttggagat
gcaaggaacaagcgacagaggaatccccgctatgaaaagctcacccctgtccctgacagc
ttcttctccaaacacctgcagaccggagaaaaaaacaccagtgttgaccctctgcaaggg
ctggcaggtctgaacaccccttaccctggaagcatgacccctggtctgatgacgccaggg
acaggagagctggacatgaggaaaattggtcaggccaggaacacactcatggatatgagg
ctcagtcaggtttctgactcagtgagtggacagacagtggtggatcctaagggttacctg
acagatctcaactcaatgatccccacacatggaggagacattagtgacatcaagaaggct
cgtctgctgctgaaatcagtgagggagaccaatccccatcacccacctgcctggattgcc
tctgccaggctggaggaggtgactggcaaactacaggtggcgaggaacctgatcatgaaa
ggcaccgagatgtgtcctaagagtgaggacgtgtggctggaggcagcccggctccagcct
ggggacacggctaaagccgtggtagcccaggccgtccgtcacatgccgcagtccgtccgc
atctacatcagagctgcagagctggagacagatgtcagggccaagaaacgagtcctcagg
aaggccctggagaacgtgtccaagtcagttcgactgtggaagacggctgttgagctggag
gagccagaggatgccaggatcatgcttagccgagctgttgagtgttgccctacgagtgtg
gagctgtggctggcactggcccggttagagacgtacgagaacgcccgtcgtgtcctgaac
aaagctcgagagaacattcccactgatcgccacatctggattactgctgctaaattggag
gaggccaatggcaacactcagatggtggagaagatcatcgacagagccatcacctctcta
cacgccaacggcgtagagatcaacagagagcagtggatacaggatgcagaggagtgtgac
aaagcaggcagtgtggctacctgccaggctgtgataagggccgtcatcgggattggtatt
gaggaggaggaccgtaaacacacttggatggaggattcggacagttgtgtgtcccatgga
gcgctggagtgtgccagggccatctacgcccactctctgcaggtgttccccagtaaaaaa
agtgtctggctcagagccgcctactttgagaagaaccacggcaccagagagtctttggag
gccctgctccagagagctgtggctcactgtcccaaggccgaggtcctgtggctgatgggt
gccaagtccaagtggctggctgaggatgtgcctgcagccagaagtatcctggctctggcc
ttccaggctaaccctaacagtgaagagatctggcttgctgctgtcaaactggagtctgag
aataatgagtatgaaagagcccgtcgactgctggccaaggcccgtagcagcgccccaaca
gccagggtatttatgaaatccgtgaagttggagtgggtgctgggaaacatagaagctgcc
caggagctgtgcactgaggccctgaaacactacgaggacttcccaaaactttggatgatg
agaggccagatcgaggagcagggtgaaaacatggacaaggccagagaggcatacaaccaa
gggttgaaaaagtgtccccactcgacatccctgtggttgttgctgtctcatcttgaagag
cgagtgggacagctgaccagagccagagcgatcctggagaaggcaagactcaagaacccc
cagagccccgagctatggctggactcggttagactggagttcagggctggactgaagaac
atctccaacacactcatggccaaagccctgcaggagtgccccaattcaggtatcctgtgg
gctgaggctgtgtttctggaggccaggccccaaaggaaaaccaagagtgtggacgctttg
aagaagtgtgaacacgatccccacgtgttgctcgctgtagccaagctgttttggagtgaa
cgtaagatcaccaaagccagagagtggttcctcaggacggtgaagattgaccccgacctc
ggagatgcttggggtctcttctacaagtttgagctgcaacatgggacagaggaacaacag
gaagaggtgcggaagcgctgtgagaacgcggagccccgccacggagagctatggtgtgcc
gagtccaaacacgtcctgaactggcagaagaagacgggagagatcttagcgctggtggcc
agcaagatcaagaatacattctga
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