Hippoglossus stenolepis (Pacific halibut): 118111329
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Entry
118111329 CDS
T08308
Symbol
cacna1db
Name
(RefSeq) voltage-dependent L-type calcium channel subunit alpha-1D isoform X1
KO
K04851
voltage-dependent calcium channel L type alpha-1D
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04010
MAPK signaling pathway
hsp04020
Calcium signaling pathway
hsp04218
Cellular senescence
hsp04260
Cardiac muscle contraction
hsp04261
Adrenergic signaling in cardiomyocytes
hsp04270
Vascular smooth muscle contraction
hsp04530
Tight junction
hsp04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
118111329 (cacna1db)
04020 Calcium signaling pathway
118111329 (cacna1db)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
118111329 (cacna1db)
09144 Cellular community - eukaryotes
04530 Tight junction
118111329 (cacna1db)
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
118111329 (cacna1db)
09153 Circulatory system
04260 Cardiac muscle contraction
118111329 (cacna1db)
04261 Adrenergic signaling in cardiomyocytes
118111329 (cacna1db)
04270 Vascular smooth muscle contraction
118111329 (cacna1db)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
hsp04040
]
118111329 (cacna1db)
Ion channels [BR:
hsp04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
118111329 (cacna1db)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
CAC1F_C
Ca_chan_IQ
GPHH
PKD_channel
DWNN
PFF1_TM
Motif
Other DBs
NCBI-GeneID:
118111329
NCBI-ProteinID:
XP_035015696
LinkDB
All DBs
Position
6:17683382..17758950
Genome browser
AA seq
2242 aa
AA seq
DB search
MPFIIRGRPLRGAQYPSNKTTTPSTDASALWSESNTRLHQLHPQEQLQAPASTGKPVGTS
YGLLGVNSGNQVVDGTGTSVSPVLAWHAAISAARQAQGDTAKPDTDSRPSVCTTGPAPVG
SLAQRKRQQYAKSKKQGGSTNSRPPRALFCLTLNNPIRRACISLVEWKPFDIFILLSIFA
NCVALAIYIPFPGDDSNSTNQELETVEYAFLIIFTIETFLKIIAYGLVMHQNSYVRNGWN
MLDFVIVIVGLFSVVLEMVTKDADSGGQSGGKPGGFDVKALRAFRVLRPLRLVSGVPSLQ
VVLNSIIKAMVPLLHIALLVLFVIIIYAIIGLELFIGKMHATCYVIQTGVLSEEEPTPCA
VSGHGRHCMFNGTVCREGWQGPNNGITNFDNFLFAMLTVFQCITMEGWTDVLYWMNDAMG
FELPWVYFVSLVIFGSFFVLNLVLGVLSGEFSKEREKAKARGDFQKLREKQQLEEDLKGY
LDWITQAEDIDPENEEEGDEEGKRNRVTLADLTEKKKGKFGWFTQSTETQASMPTSETES
VNTDHHNGEEDKSPCCGPLCQKITKSKCSRQWRRWNRFCRRKCRVAVKSVTFYWLVIILV
FLNTLTIASEHYNQPDWLTAVQDIANKVLLAMFTMEMLVKMYSLGLQAYFVSLFNRFDCF
VVCGGIVETILVEVAIMSPLGISVFRCVRLLRIFKVTRHWASLSNLVASLLNSMKSIASL
LLLLFLFIIIFSLLGMQLFGGKFNFDETVTKRSTFDNFPQALLTVFQILTGEDWNTVMYD
GIMAYGGPSSSGMVVCIYFIILFICGNYILLNVFLAIAVDNLADAESLNTAQKEEEEAKK
RKNSAKDTSTDNNRVEITEASDGETKMPADAMLEEDKELYPAIDSPVCNVDHDNEELPEV
APGPRPQRLSELTIKEKTPPIPEGSAFFIFSSKNPFRVFCHKLINHQIFTNLILVFIMLS
SVSLAAEDPIRNFSARNIILGYFDYAFTAIFTVEILLKMTAFGAFFHKGAFCRNYFNLLD
LLVVGVSLVSFGIQSSAISVVKILRVLRVLRPLRAINRAKGLKHVVQCVFVAIRTIGNIM
IVTTLLQFMFACIGVQLFKGKFYRCTDDAKSSPEECKGTYILYNNGDTAIHTAMHTVMPM
VKERIWHNSDFNFDNVLMAMMALFTVSTFEGWPTLLYKAIDSNKENMGPIYNYRIEISIF
FIIYIIIIAFFMMNIFVGFVIVTFQEQGEKEYKNCELDKNQRQCVEYALKARPLRRYIPK
NPYQYKFWYVVNSTGFEYVMFVLIILNTLCLSIQHHGQSHLFNYAMDVLNMVFTGVFTVE
MILKLIAFKPRNYFADAWNTFDALIVVGSVVDIAITEINNTEDSARISITFFRLFRVMRL
VKLLSRGEGIRTLLWTFIKSFQALPYVALLIAMLFFIYAVIGMQVFGKIAMVDGTQINRN
NNFQTFPQAVLMLFRCATGEAWQEIMLACLPGKLCDPESDYNPGEERTCGSSFAIIYFIS
FYMLCAFLIINLFVAVIMDNFDYLTRDWSILGPHHLDEFKRVWSEYDPEAKGRIKHLDVV
TLLRRIQPPLGFGKLCPHRVACKRLVAMNMPLNSDGTVMFNATLFALVRTALKIKTEGNL
EQANEELRAVIKKIWKRTSMKLLDQVVPPAGDDEVTVGKFYATFLIQDYFRKFKRRKEQG
LVGRPSWERLNTTMALQAGLRTLHDMGPEIRRAISCDLQEDGLVDANGEEEEEIYRRNGS
LFGNHVNHVSGDQQGSSQPTTVTQRPLQILTFSCSSSTEPTQTGRRAGSNDREGETEMNS
SPIQYNHHYHPPHPHNSPHCNSTRNQSPIPSNANLNNANVPSLLSMTSVRQQRCLLKRDR
PSSTKNGSSASTHSKGAHDKTVRSHSTRTRYYEAYIRPESGGGLYPTICREEPGVMDSDE
DRGSGEYFSGEEFHEDDIMLTRDRLSNKEQHDDAEADFDLEVAGGNNQTESYYNDDQQLI
HQDSRRSPRRWFLPSPQASNKPTFSFECLRRRSSQDDAPLSPSCTALPLHLVQQQVMAVA
GLDPRIHRRSPTRSLRSWATPPASPISLNYSPCYTPLIQVDWRSPGSVSSIPGAVKRSSW
YTDGLEGPPSRSQSPSRLQLPAESCSHFLQKRGSATSLVEAVLISEGLGKYAKDPKFVSA
TKHEIADACEMTIDEMESAASNLLNGSVSDDTNGGTGNVSSDTQATAHLRDHSIRDYSDE
EPYVAVKCEEDLKDEMICITSL
NT seq
6729 nt
NT seq
+upstream
nt +downstream
nt
atgccgttcattataaggggaagacccctgaggggggcacagtatcccagcaacaaaaca
accactccctccactgatgcctcggccctctggtcagaaagcaacacccgcctgcaccag
ctccatccacaagagcaactgcaggctccggccagcaccggcaagccagtcggcacctcg
tatggcctccttggggttaacagtggcaatcaggttgtcgatggcactggcaccagtgtc
agcccagtcctcgcttggcacgccgccattagcgcggctcgccaagcacagggcgatact
gcaaagcctgacacagactcacggccctcagtttgcaccactggaccagctcctgtaggc
tcactggcgcagaggaagaggcagcagtacgccaaaagcaaaaaacaaggaggatctacc
aacagcaggccacccagagctctgttctgcctcaccctcaacaacccgatccgccgggcc
tgcatcagcctggtggagtggaaaccatttgatatctttatactgctgtctatttttgcc
aactgtgtggccttagccatctacatccccttccctggagacgactccaattctaccaac
caagagctggaaacagtagagtatgccttcctcatcattttcactatagagacatttctg
aagattattgcctacggcctggtcatgcaccaaaactcctacgtcagaaacggctggaac
atgctggactttgtcattgtcattgtggggttgttcagtgttgttctggagatggtaacc
aaagacgctgactctggtggacagtctggaggcaaacctggggggtttgacgtcaaggcc
ctccgggccttccgcgtgcttcgaccccttcgccttgtctctggagttcccagtttacag
gtggttttaaactccatcattaaagccatggttcccctgcttcacatcgctctgctcgtc
ctcttcgtcatcataatctacgccatcattggcctggaactcttcatcggcaaaatgcat
gccacatgctatgtgatacaaacaggtgtcctctccgaagaagagcccacgccatgtgcg
gtatcagggcacggccgtcactgcatgttcaacggtacagtttgcagagagggctggcag
ggccccaacaacggcatcaccaacttcgacaattttttgtttgccatgctcaccgtgttc
cagtgcatcaccatggagggctggactgatgttctctactggatgaatgatgcaatgggc
tttgagctgccttgggtgtactttgtcagtctggtcatctttggatccttctttgtcctc
aacttggtcctgggtgtgttaagcggagagttttccaaagagcgagagaaggccaaggct
cggggagacttccaaaagctccgtgagaagcagcagttggaggaagacctaaagggctac
ctggactggattacccaggccgaggacatcgaccctgagaacgaggaagaaggagacgag
gagggcaagcgtaaccgggtcacgctggctgacctcactgagaagaagaaagggaagttt
ggctggttcacccagtccacagagacacaggcgagcatgcccacgagtgagacggagtcg
gtgaacacagaccatcacaatggagaggaggacaaatcaccgtgttgtgggccactgtgt
caaaaaattactaagtcaaagtgcagtcgtcagtggcggcggtggaaccggttttgccgc
agaaagtgtcgtgtggctgtgaaatcagtgacgttttattggctggtcatcatcttggtg
ttcctcaacactctcaccatcgcctctgagcactacaaccagcccgactggctgactgca
gtacaggacatagccaacaaggttctcctggcgatgttcaccatggagatgctggtgaag
atgtacagtctggggctgcaggcgtacttcgtgtccctgtttaaccgctttgactgtttc
gtggtgtgcggaggcatcgtagagaccatcctggtggaggtggccatcatgtctcctttg
ggcatctctgttttccgctgtgtacgcctgctcaggatcttcaaagttactcgtcactgg
gcatctctcagtaacctggtggcctctctgctcaactccatgaagtccattgcctccctg
ttgctgctgctcttcctcttcatcatcattttctccctgctcggcatgcagctctttggg
ggcaagttcaactttgatgagacagtgaccaagaggagcacgtttgataatttcccccag
gctctgctcaccgtgttccagatcttgacaggagaagactggaacacagtgatgtatgat
ggtatcatggcgtacggtggtccgtcctcctctggaatggtggtctgcatttacttcatc
atcctcttcatctgtggaaactacatcctactgaacgtcttcttggccatcgccgtcgac
aacctggcagacgcagagagcctcaacacagcacagaaggaggaagaggaggccaagaag
aggaagaacagtgccaaggatacaagcacagataacaatagagtggaaataacagaagcc
agtgatggcgagaccaagatgccagcagacgccatgctagaggaagacaaagagttgtat
cctgccatcgactcgccagtgtgtaacgttgaccatgataatgaagagcttccagaagtg
gcccctggaccccgcccccagaggctttctgaactcactatcaaggagaagactccaccc
atcccggagggcagcgccttcttcatcttcagcagcaaaaacccgtttcgtgtgttctgc
cataagctgatcaaccatcagatctttaccaacctcatcctggtcttcatcatgctcagt
tctgtctctctggctgccgaggaccccatacgcaacttctctgctcgcaatattatactt
ggttattttgactatgctttcaccgcaatctttactgttgagatcctgttgaagatgacg
gcattcggagcgttctttcataaaggagctttctgtagaaactacttcaaccttttagac
ctgctggtcgttggtgtgtctctggtgtcattcggcattcagtcctctgctatctccgta
gtgaagattctccgtgttctcagagtcctccgtccactcagggccatcaacagagccaag
ggactcaagcatgtggtccagtgtgtgtttgtggcgatcaggaccatcggcaatatcatg
attgtcaccaccctgctgcagtttatgttcgcttgtatcggtgtacagctctttaagggg
aaattttatcgatgcacagatgatgcaaagtccagcccggaggagtgcaagggtacatac
attctttacaacaatggggacacggcgatacacacggcgatgcacacggtgatgcccatg
gtgaaggagaggatctggcacaacagtgacttcaactttgacaatgtcctcatggccatg
atggcactcttcaccgtctccacctttgaaggatggcccacactgttgtacaaggccatc
gactccaataaagagaacatgggtcccatctacaactaccgcatcgagatctccatcttc
ttcatcatctacatcatcatcattgccttcttcatgatgaacatctttgttggtttcgtt
atcgtcaccttccaggagcagggggagaaggagtacaagaactgtgagctggacaagaac
cagcgtcagtgtgtggaatacgctcttaaagctcgtcctctgcgacgctacatccccaaa
aacccctaccagtacaagttctggtatgtggtcaactccactgggtttgaatacgtcatg
tttgtcctgatcatcctcaacaccttgtgtctgtctatacagcaccatggtcagtctcat
ctttttaattacgccatggacgtcctcaacatggtctttactggagttttcacagtggag
atgatcctcaagctcatcgccttcaaacccagaaactattttgctgatgcatggaacacg
tttgatgccttaattgttgtgggtagcgtggttgacattgccatcactgagatcaataac
acagaggacagtgctcgcatctccatcaccttcttccgcctgttcagagtgatgcgattg
gtcaaactgctgagcagaggggagggcatcaggactctgctgtggaccttcatcaagtct
ttccaggctcttccctatgttgcactcctgatcgccatgttgttcttcatatatgctgta
ataggaatgcaggtgtttggtaaaatagccatggtggatggaacacaaatcaaccgcaac
aacaactttcaaacttttcctcaagctgtcctgatgctcttcaggtgtgctacaggtgag
gcctggcaggagatcatgctggcctgtctgcctgggaagctgtgtgacccagagtccgac
tacaaccccggagaggagagaacgtgcggcagcagttttgccattatctacttcatcagc
ttctacatgctctgtgcttttctgatcatcaatttgttcgtggctgtcatcatggataac
tttgactatctgacccgtgattggtctattctggggccgcatcacctggatgagtttaaa
cgggtctggtctgaatacgatcctgaagccaagggcaggataaagcacctcgacgtggtg
actctgctgaggaggatccagcctccactgggctttggcaagctctgcccacacagggtg
gcctgtaagcgtctggtggcgatgaacatgcccctgaacagtgacgggactgtcatgttt
aacgccactttgtttgctctggtccgcactgctctcaagattaagactgagggaaatctg
gagcaagccaatgaggagctcagagctgtgataaaaaaaatctggaagaggaccagcatg
aagctgctggaccaagttgttcccccagcaggcgatgacgaggtaacagtggggaagttc
tatgccaccttcctgatacaggactacttcaggaaattcaagaggcgcaaagagcaaggt
cttgtgggaaggccctcgtgggagaggctgaacaccaccatggctttacaagccggcctg
cgcacgctgcatgacatgggaccagagatccgtcgagccatatcatgtgacctgcaggag
gatgggctagtagatgctaatggagaggaagaggaggagatctacaggcgtaatggcagt
ttgtttgggaaccacgtcaaccatgtcagtggcgatcagcaaggctcctctcagccgacc
accgtcactcaacggccgctccagatcctgaccttctcctgcagctcctccactgagccc
acccagactggcaggagagccggcagcaatgacagggagggagagacagagatgaactcc
tcacccatccagtacaatcatcactatcatccccctcatccgcataattcccctcattgt
aattccacccgcaatcaatcgccaataccctccaatgccaacctcaacaatgccaacgtg
ccctcgcttctctccatgaccagtgtgaggcaacagaggtgtctgttaaaacgagaccgc
ccgtcctccaccaaaaatgggtcctcggcatccactcacagcaaaggagcgcatgacaag
actgtgaggtcacattccacgaggacacgctactatgaggcctacattaggccagaaagt
ggtggtggactttaccccaccatttgtcgagaggagccgggcgtcatggacagcgatgag
gatcggggctcaggagagtacttcagcggagaggagtttcatgaggacgacatcatgctc
acaagagacaggctctccaacaaggaacaacatgatgatgcagaggcagactttgatctc
gaggttgccgggggcaacaaccagactgaaagttactataacgatgatcaacagttgatc
caccaagacagcaggcggtcaccaaggagatggtttttaccctcgcctcaagcctccaac
aaaccaacgtttagttttgagtgtctccgcagaagaagtagtcaggacgatgcccctctt
tctccgtcctgcacagctcttccactgcacctggtgcagcaacaggtaatggcggtggcc
ggtcttgatcccagaattcaccgtcggtctccgaccaggtctctgcgatcctgggccacg
cctcctgcttcacccatcagcctcaactactcgccctgctacacgccgctcatacaggtg
gactggcgcagtcctggcagcgtcagcagcatccccggagcagtgaagaggagttcatgg
tacacagacggcctggagggtcctcccagtcgcagccagtccccgtcccgtctgcagtta
cctgctgagagctgttcgcacttcctgcagaagagaggcagtgccaccagtctggtggag
gctgtgttgatctctgagggtctggggaaatacgccaaagaccccaagtttgtctcagcg
accaaacacgagattgcagacgcctgcgagatgaccatcgacgagatggagagcgcggcc
agcaatctcctgaatgggagtgtgagtgatgacaccaacgggggaacgggtaacgtcagc
tcggacacacaagccaccgcacatctcagagaccacagcatccgtgactacagcgacgag
gagccgtacgtggctgtgaaatgcgaagaggacctgaaagatgagatgatatgcatcacg
tcgctatag
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integrated database retrieval system
