Hippoglossus stenolepis (Pacific halibut): 118111351
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Entry
118111351 CDS
T08308
Symbol
exosc10
Name
(RefSeq) exosome component 10
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118111351 (exosc10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsp03019
]
118111351 (exosc10)
Messenger RNA biogenesis [BR:
hsp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
118111351 (exosc10)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Motif
Other DBs
NCBI-GeneID:
118111351
NCBI-ProteinID:
XP_035015754
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All DBs
Position
6:complement(15621742..15631974)
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AA seq
902 aa
AA seq
DB search
MASSKSNDSTNSGLQDSNAGNNDEEKEELCPGFKDVDAFVKYGLGAVLSATKASAGLPQA
GDEYDFYRSFPGFQEFCESQGDKLLHCMSQIMRHHGCRSHIRDQSKLTGLEERFDLVVDS
NDVILERAGILLDEADGVNRSQQPVMPAGFQPPKIVVSSWNRKGSGSSSRAETFRLLHAK
NVARPQLKFKEKVDNSNAPFIPKIFIKPNAIKPLPSYFTNKQIQKERPEDVDVPAALADF
IHQQRTQKPVEDMFAHPYQYELDHLTTPESLLSKPEPQMYTPITETKCSFIDTLEDLVAL
NEKLCRLSEFAVDLEHHSYRSFLGITSLMQISTRDEDFIVDTLQLRGEMYILNEAFTDPS
IVKVFHGSDSDIDWLQRDFGVYVVNLFDTHQASRALNMARHSLDHLLKHFCNVDSDKRYQ
LADWRIRPLPDEMFQYARTDTHYLLYIYDCVRAQLLDFNHGQPGLLQSVWNKSKDISLKR
YLKPIYTEESYLELQRKQKKLFNTQQLTAFRLLFAWRNKLARQEDESTGYVLPTHMMIKI
SEELPKEPQGIIACCNPVPPVVRQQSNELHLLVQQAREMPLLKAEIAAQKSKGLTTIKKP
EVTLFGPHDTSRVSESDLPQFSPNELPVKKGMLFSEDEHQMDDDDDQRTCGLMASAKITL
FEELETKKDQESLSAPHMKARRIIESFENPFRMYLPTSDVHISKNAKFDPSSKIFEISKR
WKLQSMEQQQKELEAKKKAKQEGKEQAKKANEERNKEKQSYQESLANVITIRQQAAESGK
SVGKKRERVASLVGESTPRPTKKLMKSAEKPEKPEKPEKPEKPEKPPQDVFTPFDYTQSD
LKVFADPKSKDNTQFDPNRQSHDGKKKRGPKGQKSNFAAGNRSMSYLTGRSDRGFRHNWP
KR
NT seq
2709 nt
NT seq
+upstream
nt +downstream
nt
atggcttcttcaaagagtaacgactccacgaacagcggccttcaagacagcaatgcagga
aacaacgacgaggaaaaagaggagctgtgtcccgggttcaaagacgtcgacgccttcgtg
aaatatggattgggtgctgtgctatcagccaccaaggcctccgccggcttgcctcaagct
ggagatgaatatgatttctaccggagcttcccgggcttccaggagttctgtgagagtcaa
ggagataagctcctgcactgcatgagtcagataatgcggcaccatggctgcagatctcac
ataagagaccagagcaagctgacagggctggaggagagatttgacttggtcgtggactcg
aatgacgtcatcctcgaaagagcggggattcttcttgatgaagctgatggggtgaatagg
agccagcagcctgtcatgcctgcagggtttcagcctcctaagattgttgtttccagctgg
aatcgcaagggttcaggctctagcagtcgtgccgagacattccgactgctccacgccaag
aacgttgcgaggccgcagctgaaattcaaggaaaaagtagacaacagcaacgcaccattt
attcccaagatcttcatcaagcccaacgcaataaagccccttccttcttattttaccaac
aaacaaatccaaaaagagaggcctgaggatgttgatgtgccagctgccctggctgatttc
attcaccagcaaagaactcagaaacctgttgaagacatgtttgcacacccataccagtat
gaattggatcatcttacaactccagaaagcctcctgtctaagccagaaccacagatgtac
acaccaatcaccgagaccaagtgttccttcatcgacaccctggaggatctggtggcactg
aatgagaagctgtgcagattgtctgaatttgctgttgaccttgagcaccattcctacagg
agtttcctcggcatcacctctctgatgcagatctccaccagggatgaggatttcatcgtc
gacaccttgcagctccgcggcgagatgtacatcctgaacgaagcgttcactgacccgtct
attgtcaaggtgtttcatggttcagactctgacatcgactggctccagagagactttggc
gtgtatgttgtcaaccttttcgacacgcatcaggccagccgggctttaaacatggccaga
cattccctcgaccacctgctcaaacacttctgcaatgtggactccgacaaacgctaccag
ctggccgactggaggattcgccccttgccagatgagatgtttcagtacgcccggacagac
acacactacctcctttacatctatgactgtgtgagggcacagctcttggactttaaccac
gggcagcctggcctgttgcagagtgtctggaacaagagcaaggacatttccctgaagaga
tatttgaaacctatatacacagaggagtcatatttggagctgcagaggaagcagaaaaag
ttgtttaacacccagcagctcactgccttcagactgctgtttgcctggaggaacaagctg
gccaggcaggaagatgaaagcactggatacgtcctgcccacccacatgatgatcaagata
tctgaagagctgcccaaggagcctcagggcatcattgcctgttgtaaccctgtcccccca
gtggtgaggcagcagagcaatgagctccacttgttagtgcagcaagcacgagaaatgccc
ctccttaaggctgagattgctgctcaaaagtctaaggggctcacaaccataaaaaagcca
gaggtgacattgtttggaccccacgatacctccagggtctccgaaagcgacctcccccaa
ttttctcccaatgaactgcctgttaaaaagggaatgctcttctcagaagatgagcaccaa
atggatgatgatgatgatcagagaacatgtggtctcatggcatcagctaaaatcacgctg
tttgaggagctggagacaaagaaagaccaggagtctctttctgctcctcacatgaaagcc
aggcgcatcattgagtcttttgaaaaccctttcagaatgtatttacccaccagtgacgtg
cacatcagcaagaatgccaagtttgacccttcttcaaaaatatttgagattagtaaaaga
tggaaactgcagagtatggaacagcaacagaaggagttggaggccaagaagaaagccaag
caagaaggaaaggaacaggcaaagaaagcgaatgaggaaagaaacaaggagaaacaaagc
taccaggagtctctagcaaacgtcatcaccattcgccaacaagcagcggaatctggaaaa
agtgtcggaaagaaaagggagagggttgccagtttggttggagagtcgactcccagaccg
accaagaaactgatgaaatctgcagagaagccagaaaagccagaaaagccagaaaagcca
gagaagccagagaagcctccccaagatgtcttcacacccttcgactacactcagtcagac
ctcaaagtctttgccgaccccaaatcaaaggacaacacacagtttgatccaaaccggcaa
agccatgatggcaagaaaaagagaggccccaagggacaaaaatccaattttgcagctgga
aacagaagtatgtcgtacctgactgggagatctgacaggggattccggcataactggccc
aaaagataa
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