Hippoglossus stenolepis (Pacific halibut): 118111367
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Entry
118111367 CDS
T08308
Symbol
mbd4
Name
(RefSeq) methyl-CpG-binding domain protein 4 isoform X1
KO
K10801
methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
118111367 (mbd4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
hsp03036
]
118111367 (mbd4)
03400 DNA repair and recombination proteins [BR:
hsp03400
]
118111367 (mbd4)
Chromosome and associated proteins [BR:
hsp03036
]
Eukaryotic type
Heterochromatin formation proteins
MBPs (metylated DNA binding proteins)
118111367 (mbd4)
DNA repair and recombination proteins [BR:
hsp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
118111367 (mbd4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MBD
HhH-GPD
Motif
Other DBs
NCBI-GeneID:
118111367
NCBI-ProteinID:
XP_035015785
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All DBs
Position
6:8555690..8558843
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AA seq
486 aa
AA seq
DB search
MIYSGETTTHLSKCIQLETSGDMNNQSHKDRDDSCHISTMPPGWIREVRQRRAGKTAGKL
DVYIISPQGQKFRSKSSLHAFLLQNEDGSLDINVFDFTTSKGDVITASQIIFPTQIKPKR
RKKKQKETTQDAVEILNPPPTKSKRATSPCRSTKEDNVRSSDDFNHINTDILPEVCRNKT
EETVECCIQAAPSVIVEDVIMQGSPQIVGLREKLLRLAPSSKQKITSSVQVDEQTDSQPS
VPTLTVEPATESENEREEERGEEEMQIHSKGEKKPNSELEIDADSHQDVEEEVLLPDSDV
SSTPVRDSQNKSKSSEDKRKTSPYFSRKSLKDGLSPPRRKAFKKWTPPRSPFNLVQETLF
HDPWKLLVATIFLNKTSGKMAIPALWQFFERYPSAEVTREADWKPMSELMKPLGLYELRS
KALIRFSDEYLTKQWRYPIELHGIGKYGNDSYRIFCVGEWRQVTPKDHMLNKYHAWLWEN
HETLGI
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgatatactctggagaaacaacaacacacctttctaaatgcatccagctggagaccagt
ggcgacatgaataaccaaagtcacaaggacagagatgattcgtgccacatttccacaatg
ccccctggctggatcagggaggtgaggcagaggagagcaggcaagacagcaggcaaactg
gacgtctacataataagtccccaggggcagaagttccggtcaaagtcatccctgcacgct
ttcctcctacaaaatgaagatgggagcttggacatcaacgtctttgatttcaccacatcc
aaaggtgatgtcatcacagcttcacaaataatattccccacccaaattaaaccgaagagg
agaaagaaaaaacagaaggagacaacgcaagatgcagtggaaattctgaatccacctcca
actaaatctaaaagagccacctccccctgcagaagtactaaagaagacaatgtaaggagt
tcagatgactttaaccatattaatactgacattttaccagaagtgtgtagaaataaaact
gaggagactgtggagtgctgcatccaagctgcaccttcagtaatagtggaagatgtgatt
atgcaggggagtcctcagatagtcgggctgagagagaagctactccgactggctccatct
agcaaacagaaaatcacttccagtgttcaggtggacgaacagacagactcgcagccttct
gtcccgacactgactgttgaacctgccactgagagcgagaatgagagagaggaggaaaga
ggtgaagaagagatgcagattcacagcaaaggcgagaaaaagcctaattctgaactggag
attgatgctgacagtcatcaggatgttgaagaggaggtgttgttacccgacagtgatgtc
agctctacaccagtgagagattcccagaataagtccaaaagctcggaagacaaacggaaa
acaagcccttatttcagcagaaaatccttgaaagatggactcagtcctcccaggaggaaa
gcctttaagaaatggacaccccctcgttctccattcaacctcgttcaggaaacccttttc
catgatccctggaagctcctggttgccaccatctttctaaacaagaccagtggcaagatg
gctattccagcactgtggcagttctttgagcgttacccatcagcagaggtgacccgggag
gccgactggaagccgatgtctgaacttatgaagccacttggcctctatgagcttagatcc
aaagcactcatccgtttctcagatgaatatctaactaaacagtggcgttaccccatcgag
ctgcacggtatcgggaagtacggcaacgactcctacaggatcttctgtgtgggagagtgg
agacaggtgacacctaaagatcacatgttaaacaaatatcacgcctggctgtgggagaac
catgaaactcttggaatctga
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