Hippoglossus stenolepis (Pacific halibut): 118111826
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Entry
118111826 CDS
T08308
Symbol
nfkb1
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04010
MAPK signaling pathway
hsp04210
Apoptosis
hsp04218
Cellular senescence
hsp04620
Toll-like receptor signaling pathway
hsp04621
NOD-like receptor signaling pathway
hsp04622
RIG-I-like receptor signaling pathway
hsp04623
Cytosolic DNA-sensing pathway
hsp04625
C-type lectin receptor signaling pathway
hsp04920
Adipocytokine signaling pathway
hsp05132
Salmonella infection
hsp05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
118111826 (nfkb1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
118111826 (nfkb1)
04218 Cellular senescence
118111826 (nfkb1)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
118111826 (nfkb1)
04621 NOD-like receptor signaling pathway
118111826 (nfkb1)
04622 RIG-I-like receptor signaling pathway
118111826 (nfkb1)
04623 Cytosolic DNA-sensing pathway
118111826 (nfkb1)
04625 C-type lectin receptor signaling pathway
118111826 (nfkb1)
09152 Endocrine system
04920 Adipocytokine signaling pathway
118111826 (nfkb1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
118111826 (nfkb1)
09171 Infectious disease: bacterial
05132 Salmonella infection
118111826 (nfkb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hsp03000
]
118111826 (nfkb1)
Transcription factors [BR:
hsp03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
118111826 (nfkb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank_2
Ank
Ank_3
Ank_4
Ank_5
Death
Motif
Other DBs
NCBI-GeneID:
118111826
NCBI-ProteinID:
XP_047196432
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All DBs
Position
7:27545870..27566927
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AA seq
942 aa
AA seq
DB search
MAGEDHYLHSNNQIFDNMIMDAPWEFQPYAAMSQTTSLRTADGPFLQILEQPKQRGFRFR
YGCEGPSHGGLPGASSEKNRKTYPTVKIGNYQGPARVVVQLVTALPTLPQLHAHSLVGKQ
CDKGICITDLQPKDSSISFPNLGILHVTKKNVAKTLEERMIEAFRMGYNCGVSIHPEIDA
LQGEVRVPRDLHDHQRSVISSAASLQAKEMDLSVVRLLFTAFLPDSDGGFSRRLEPVVSE
PIYDSKAPNASNLKIVRMDRTAGCVTGGEEVYLLCDKVQKDDIQVRFYEEDDSAVTWEAL
GDFSPTDVHRQFAIVFKTPKYRDQNLQRPTSVFVQLKRKSDNETSEPKPFTYHPQIIDKE
EVQRKRQKTLPNFQDFSGHGGGGGLYRGGGPAAGGGPGSAGGGAGGFIQGFTTYNYGGGG
GGGGGGFSTGYSAGLAGGGGGGGGGGFSTGYSAGLGGGGGGGAAIKHASQSGTVDDSDPD
DDDSGAAVRASARPGGVEVGGRTEEGGVSVEPEPDTDERWVHGTSRQLEALFHFSVTGDP
VYLLAPQRPLMAAQDEDGDTGLHLAVLHSQQAALKSLTQVVSALPGEEVLNMRNHLYQTP
LHLAVITQQSEAAEALLLAGADPTLTDRHGNTALHLAAQQEGGGAMVQFLLQHQEVRGLM
EHNNTAGLCPIHLAVLANQLSSLRELLEGGANVEAQERSCGRTALHLATEADNVSLAGCL
LLEGNADVDCCTFNGSTPLHTAAGRGSVKLTALLVAAGADPHKENYEPLFFREDECCHDD
ADADEGYIPGTTPFNMAATTQVIELLNGKEYEAKTPHGAVSRPQGDLASLDVGVKQEVCC
ALESEGCWEKLAHSLGLGILNTAFRLSPSPAKTLLDSYEVSGGTVSDLLAGLRSVGECRA
LSILEEALRRSEETSTSVESRVKADVRIDSGVCDSGVELSTA
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggctggagaagaccactaccttcattctaacaatcagattttcgacaacatgattatg
gatgcaccgtgggagtttcagccctacgctgccatgtctcagacgacgtccctgagaaca
gcggacggaccgttcctgcagatcctggagcagccgaagcagcgaggcttcaggttcaga
tacggttgtgaaggtccgtctcacggcggtctgccaggagcgtccagcgagaagaacagg
aagacctaccccaccgtcaagatcggtaactaccagggtccagcccgggttgtggtccag
cttgtgacggcgctccccaccctccctcagcttcacgctcacagtctggtgggaaaacag
tgtgacaaaggaatctgcatcacggacctgcagcccaaagactccagcatcagtttccca
aacctggggattctccatgtaacgaagaagaacgtggcgaagactctggaggagaggatg
atcgaggcgttcaggatgggatacaactgtggcgtctccatccacccagagattgatgcc
ctgcagggggaggttcgagtcccccgagacctccacgatcaccagcgcagtgtgatcagc
agtgcagcgtctctacaggctaaagaaatggacctcagtgtggtgcggctcttgttcacg
gcgttcctccccgacagtgacggaggtttctccagacgactggaacccgtcgtgtctgaa
ccgatctacgacagcaaggctccgaacgcctccaacctgaagatcgtgaggatggatcga
accgccggctgcgtgacgggaggagaggaggtttatctgctgtgcgacaaagtccagaaa
gatgacatccaggtccggttctatgaagaagacgactcggcggtgacctgggaggctctg
ggagatttctcaccgacagacgtccacagacagttcgccatcgtcttcaagactccgaag
taccgagaccagaacctgcagaggccgacgtccgtgttcgtccagctgaagaggaagtcc
gacaacgagaccagtgaacccaaacccttcacctaccacccccagatcatcgacaaggag
gaggtgcagaggaagaggcagaagactttgcccaactttcaggacttcagcggccatgga
ggaggaggaggtctgtacagaggaggaggtccagcagcaggaggaggccctggctctgca
ggaggaggagcaggcggttttatccagggttttactacctataactatggaggaggagga
ggaggaggaggaggaggtttctccacaggatactcagctggtctggcaggaggaggagga
ggaggaggaggaggaggtttctccacaggatactcggctggtctgggaggaggaggagga
ggaggagcagccatcaaacacgcgtctcagagcggcaccgtggacgacagcgatccagac
gacgatgactcgggggccgcggtgcgagcttcagcccggcctggaggcgtggaggtgggg
gggaggacggaggaggggggggtcagtgtggagccagaaccagacacagatgagcggtgg
gtccatgggaccagccgacagttggaggctctcttccacttctctgtaacaggtgaccca
gtttacctgctggctccacagcgccccctgatggcagcgcaggacgaggacggggacacc
gggctccatctggcggtcctccacagccagcaggcggcgctgaagagtctgacccaggtg
gtttctgctctgcctggagaggaagttctcaacatgaggaaccacctgtaccagactcct
ttgcacctggcggtgatcacgcagcagagcgaggcggccgaggcgctgctattggccgga
gccgaccccacgctgaccgatcgccacggcaacacagctcttcacctggcggcacagcag
gaaggaggaggagctatggtccagtttctactacaacaccaggaagtgagaggactgatg
gagcacaacaacacagcaggtctgtgcccgatccacctggctgttctggccaatcagctg
tcttctctcagggagctcctggagggcggggccaacgtggaggctcaggagcgcagctgt
ggaaggaccgccctccacctcgccacggaggccgacaacgtgtcgctggccggctgcctg
ctgctggagggaaacgcagacgtagactgctgcacctttaatggctccacccccctccac
actgctgcagggaggggctccgtcaagctcacagcgctcctggtggcggcaggggccgac
cctcataaagagaactatgagccgctgttcttcagagaggacgagtgttgccatgacgac
gcagacgcagacgaaggctacatcccaggaaccactccgttcaacatggccgccaccacc
caggtgattgagcttctcaacggaaaagagtacgaagccaaaactcctcacggagccgtg
agccgaccacaaggtgacctggcgagcctggatgtgggggtgaagcaggaagtgtgttgt
gccctggagagtgaaggatgctgggagaagctggctcacagtctgggccttgggatccta
aacacggcgttcagactgagcccctcccccgccaagacactgctggacagctacgaggtt
tcgggggggacggtcagtgacctgttggctggtctgaggtcagtgggagagtgcagagcg
ctgagcatcctggaggaggcgctgcgtcgctctgaggaaacgtcgacgagcgtcgagtct
cgggtgaaggcggacgttcggattgacagcggcgtctgtgacagcggggtggagctttcc
acagcgtaa
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