Hippoglossus stenolepis (Pacific halibut): 118111909
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Entry
118111909 CDS
T08308
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
118111909 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsp03021
]
118111909 (polr1a)
Enzymes [BR:
hsp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
118111909 (polr1a)
Transcription machinery [BR:
hsp03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
118111909 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box_2
CDC45
Nop14
DUF4604
Pox_C7_F8A
Motif
Other DBs
NCBI-GeneID:
118111909
NCBI-ProteinID:
XP_035016584
LinkDB
All DBs
Position
7:complement(6038419..6061278)
Genome browser
AA seq
1707 aa
AA seq
DB search
MLFGKDVPWRRLEGLTFGMYSAEEIRKLSVKAITNFRFLDGVGNVAPNGLYDLALGPADS
KEVCSTCCQDFNMCPGHFGHVDLPLPVYNPLFFDKLYLLIRGSCLACHMLTCPRAALHLL
LSQLKLVDHGAMLDVYTIEQVLNQYLEENPKASGDEIAQVLKAFTDKALGVNPEGPEITK
PIKHLVEKKSSLINDFWKINMKTRKCPLCKSGRFPVRREHNSKLIVTMPSGLQTPDNADE
DQLAGKKVYMTASTAREHINSLWEKEGFFLRCLFSGLEECEASAEGDKGFYPDLFFLELL
VVPPCRYRPINRLGDQMFTNGQTVNMQAVMKDCGIIRKLLALIAGENDPQEEEAPEQTDQ
SFLAGITGQTLTDKLYNIWIRLQTHVNIVFDSDMDKMMTEKYPGIRQILEKKDGLFRKHM
MGKRVDYAARSVICPDMYIETNEIGIPMVFATKLTYPQPVTPWNVKELRQAVINGPNIHP
GASMVINEDGRKTILSSSNLAQREAVAKQLLTPCPGPHKMPVKIVNRHIKNGDVLLLNRQ
PTLHRPSIQAHSARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYTLVS
TDQQYLVPKDGKPLAGLIQDHMVSGTRMTIRGCFFTRDQYTELVYRGLTDKPGRVKLLPP
AIIRPQQLWTGKQVVSTLLLNVIPEKAVPLNLIGKSKIPSKAWIQVPPRAAPGYRPDSMC
DSQVVIRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGGTSGKLLSCLARLFTAYLQLYR
GFTLGVEDILVKPGANKRREKIIKESLSIGTKALQAAFKLPSDVDQAEAQSRWQDAHLNP
DQRDFSIADHKFKEVANQVNNDINKVCMPIGLHTSFPDNNLQLMVQSGAKGSTVNTMQIS
CLLGQIELEGRRPPLMPSGKFLPCFQPYDPAPGAGGFVSGRFLTGIKPQEFFFHCMAGRE
GLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDQTVRDSDGSVVQFLYGEDGLDIPKTPFLQ
PRQFPFIEDNYEVIQRSQGLDKILAHLDPQAANQHFAAIQRWKTKREVACPRRGAFLLFA
QKKMAKLKQTEQTTGPDVNGRNAAVQQLVQQWYSLDEVSRSKYSRRSSRCPEPSLGLFRP
DVCFGSVSENFQDITEKFLQNRGMTSQGMVDTHSLRQLLHYKWQRSLCDPGEAVGLLAAQ
SIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIKTPMMSVPVLNNKKALKK
AKTLRKKLTRVCLAEVLQKVDVVESLRVEGHQKLRTFKVSFHFLPAERYCNDKLLSPQQI
LHYMETRFFRLLLEAIKKRSAKLASIAVETRKATPRDNDHNGDGPAGTAGLDDGEGEEEK
DIVDDQENEGDADASDAKRIGKQEEEVDYESDEEDGVEDAEDKEDQEEEVGESEEKNTQE
ESQPECEGVRLDKKKKKKKRAKKGEGEEREEEDMSQMRVNSVLQSNAAIERYCYDHQHEL
WCELDVVLPVSKVHFDLTSVLSTLAQNAVIMETRGLTRCLLNEAKTKTGEKETILNTEGI
NMHEMFKYSDILNINRLYSNEVHAMANTYGIEVALKVIEKEIKDVFAVYGIEVDPRHLSL
VADYMCFEGVYKPLNRHAIRSNSSPLQQMTFETSYKFLKQATMLGSHDQLVSPSACLVVG
KIVRGGTGLFELKQPLQSETREKPHEA
NT seq
5124 nt
NT seq
+upstream
nt +downstream
nt
atgttgtttggaaaagatgtgccgtggcggcgtttggagggcctgacgttcggcatgtac
tctgccgaagagataaggaagttgagtgtgaaggcgatcacgaacttcaggttcctggat
ggagttgggaatgtggctccaaacggtctgtacgacttggccctgggaccagcagacagc
aaagaggtgtgttcaacctgctgtcaggacttcaacatgtgtccgggtcactttggacat
gtggatcttcctctacctgtttacaacccactgttctttgataaactctacctgttgatc
cgcgggtcctgtctggcgtgtcacatgttgacgtgtcccagagcagccctccacctgctg
ctgagccagctgaagttagtggaccatggagccatgctagatgtctacacgatagagcaa
gttcttaaccagtatctggaagagaatcccaaagcctctggagatgagattgcgcaggtg
ctgaaagcgtttacagacaaagccctcggagtgaaccccgaaggtccggagatcaccaaa
ccaattaaacatcttgttgaaaagaagagcagtctgataaatgacttctggaagatcaac
atgaaaacaaggaaatgtccgttgtgcaagagcggaaggtttccagtacgtcgtgagcac
aacagcaagctgattgtaacgatgccgtcaggactgcagacccctgacaatgcggatgaa
gatcaactggctggaaagaaagtgtacatgactgccagcactgccagagaacacatcaac
agtctgtgggagaaagaaggtttctttctgaggtgtctgttctctgggctggaggagtgt
gaagcatcagcagagggagataaaggtttctatcctgacctcttcttcctggagctgctg
gtggttccaccttgcaggtatcgtccaatcaatcgacttggtgaccagatgttcactaac
ggtcagacagtcaacatgcaggctgtcatgaaagactgtggaatcataaggaaacttctg
gctctcatagccggggaaaatgatcctcaggaagaagaggctcctgaacagacagaccag
tcgttcctggctgggatcaccggacagactttgacagataaactctacaacatctggatc
cgactacagacccacgtcaacatcgtgtttgacagtgacatggacaaaatgatgacagag
aaataccctggaatcagacagatcttggagaagaaagatggattgttccggaaacatatg
atgggcaaacgagtggactacgctgcacgatctgtcatctgtccagacatgtacatagaa
accaacgagattggaatacccatggtgtttgccaccaagctgacataccctcagcccgtc
actccatggaacgtgaaggagcttcgccaggccgtcattaacgggcctaacattcacccc
ggcgcttccatggtgataaacgaggatggcaggaaaaccatcctatcatcctccaatctt
gcacagagggaagcggtggctaagcaactgctgacgccttgtcctggtccacataagatg
ccagtgaagatagtgaatcgtcatatcaagaacggagatgttttgttactcaacagacaa
ccgactctgcacagaccctccatacaagcccacagtgcccgcatcctcccaggagagaag
gttttaaggctccattatgcaaactgcaaggcttacaacgctgactttgatggagacgag
atgaatgctcacttccctcagagtgagctaggcagagcagaggcctacacattagtcagc
actgaccagcagtacctagttcctaaggatggtaaacctctagcaggtctgatccaggac
cacatggtgtcaggaacgaggatgacgatacgaggctgtttctttaccagagaccagtac
accgagttggtgtaccgaggattaactgataaaccaggcagagtgaaactgctgccgccg
gccatcatcagacctcagcagctgtggacaggaaagcaggtggtgtccaccctcctactg
aacgtgatcccagagaaagcagtgcctctcaacctgatcggcaaatcaaaaatccccagt
aaggcgtggatccaagtcccgccacgtgctgctccgggatacagacctgacagcatgtgt
gactcacaggtggtgatccgtcagggtgagctgcttgtgggggttctggacaaagctcac
tacggttcctcagcctatggtctggtccactgctgctatgagctttacggaggagggacc
agcgggaaactgctcagctgtctagctcgactttttaccgcctacctgcagctttacaga
ggcttcactttgggtgtggaggacatcctggtgaaacccggcgccaataaacggagggaa
aaaatcatcaaagaatcactcagcattggcaccaaagccctgcaggcagccttcaaactg
ccctccgacgtggatcaagctgaggcccagagccgctggcaggatgctcacctcaaccca
gaccagagagacttcagcatagccgaccacaagttcaaagaagtggctaaccaagtcaac
aatgatatcaacaaggtgtgtatgccaattggactccacacctctttcccagacaacaac
cttcaactgatggtccaatcaggagccaaaggatctactgtgaacaccatgcagatttca
tgtctactaggtcagattgagttagaaggtcgtaggcctccactgatgccctctgggaaa
ttcttgccgtgttttcaaccatatgaccctgcaccgggtgctgggggcttcgtgtctgga
agattcctcacaggcatcaaaccacaggagtttttcttccactgtatggctggcagagaa
ggactggtcgacacagccgtgaaaacctctcgatcaggatacctgcagagatgcgtcata
aagcatctggagggtctggtagtgcagtatgatcaaacggtgagggacagcgatggatcc
gtggtccagtttctgtacggtgaagacgggctggacatccccaagactccgttcctgcag
ccacgacagtttcccttcatagaggacaactatgaggtcatccagagatcccagggcctg
gacaagattttggcacatttggaccctcaggctgccaatcaacactttgcagccatccag
cgctggaagacaaagagagaagtggcatgtccaaggagaggagcgttcttgttgtttgcc
cagaagaagatggcaaaactaaaacagactgaacaaacaacaggtccagatgtcaatggc
agaaatgccgctgtacaacaacttgtacagcagtggtattctctggatgaagttagcaga
tcgaaatacagcaggaggtcctcccgctgccccgagccctcgctaggcttgtttcggcca
gacgtctgctttggatcggtgtctgaaaacttccaagacatcacagagaaatttctgcag
aacagaggcatgacgagtcaaggcatggtcgacactcacagccttcgccagctgttgcac
tataaatggcagcgttcactctgtgatccgggtgaagcggtgggtctgctggctgctcag
tccataggggagccctccacccagatgaccctcaacactttccactttgctggcagagga
gagatgaacgtcactttgggaattcctcgactaagagagatcctcatggtggccagctcc
aacattaaaactcccatgatgagcgttccagtactgaacaacaagaaagccttgaagaag
gcaaagacgctccgtaagaaactcaccagggtttgtctggctgaggttctgcagaaagtg
gacgtggttgagtcactgcgggttgaaggccaccaaaagctgcggacgtttaaagtctcc
ttccacttcctgcctgccgagcgttactgtaacgataagctgctctcgcctcaacagatc
ctccactacatggagacgaggtttttccgtctcctccttgaagccattaagaagcgcagc
gccaagctggcttccatagccgtggagacgaggaaagccacccctagagacaatgaccac
aacggtgatggaccggctggcacagcagggttagacgacggggaaggagaagaggagaaa
gacattgttgatgaccaggagaacgaaggagatgctgatgcttcagatgccaagagaata
ggcaaacaggaagaagaggtggactatgagagtgacgaggaggatggagttgaagatgct
gaagataaagaagatcaggaagaggaggtgggtgagagtgaggagaagaacactcaggag
gagtcccagcctgagtgtgaaggagtaagactggacaagaagaagaagaagaagaagcga
gcaaagaaaggggaaggcgaagaaagagaagaagaggacatgagtcagatgagagtcaac
tctgttctgcagtccaacgcagcaatagagagatactgctacgaccaccagcatgagctc
tggtgtgagttggacgtggtcttaccagtcagcaaggtgcactttgacctgacctcagtc
ctgtcaacgctggcccagaacgccgtcatcatggaaaccaggggcctgactcgctgcctg
ctgaacgaagccaaaacaaagaccggagagaaagagacgattcttaacacagaaggaatc
aacatgcacgaaatgttcaagtacagtgacatcttgaacatcaacaggctgtactctaat
gaggttcatgccatggctaacacctatgggattgaagttgctttgaaggtcatagagaag
gagatcaaagatgtctttgctgtttacggtatcgaggttgaccccagacatctttccctg
gtagcggactacatgtgctttgaaggtgtatataagcccttaaaccgacacgccatcaga
tccaactcctcccctttgcagcagatgactttcgagaccagttacaagttcctcaaacag
gcgaccatgctggggtcccacgaccagctagtgtctccctcggcctgtctggtagtgggg
aagatcgtccgaggaggaacgggactttttgaactgaaacaacctctgcagtcggagacg
agagagaaacctcatgaggcctga
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integrated database retrieval system
