Hippoglossus stenolepis (Pacific halibut): 118111912
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Entry
118111912 CDS
T08308
Symbol
pcdh20
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
118111912 (pcdh20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
hsp01009
]
118111912 (pcdh20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
hsp04515
]
118111912 (pcdh20)
Protein phosphatases and associated proteins [BR:
hsp01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
118111912 (pcdh20)
Cell adhesion molecules [BR:
hsp04515
]
Cadherins
Protocadherins
118111912 (pcdh20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
RET_CLD1
Motif
Other DBs
NCBI-GeneID:
118111912
NCBI-ProteinID:
XP_035016592
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All DBs
Position
7:11980874..11984446
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AA seq
863 aa
AA seq
DB search
MGHGTPDNMNWAGLLQNLLLLVHLRQIVCDSVRFSVLEEQEPGTLVGSLAEHFPPPYQLL
TQDYLWMDRKTGNFYTTENKMDREALCPEDTKAEECIILLYAIVRTSGDLIQFPVIIEDI
NDNTPRFENSDIHLRISEDVTVGTSFLLDDQAQDRDAGLNGDLQYHLEYSDVDDNGVFGL
KVEEDGLFLMLVVQTALDRETKDQYQMVLVATDRGVGPLSVTATLTVTVTDVNDNCPRFS
SDSPSSVTIPGDSPKNMLVAQVRAADPDLGPNAAIAYSLSPKVSERAKKLFSLDSLTGYI
TLTQDLWSDNSEELVLKVLASGHHCPPADTQVTVCVLPKATQELTIKIGFIVEHENQTMV
LPENQPPTVLAVLELEGDSSFKGSSLAIEGEVPFTLSPQNGKYLLSTSKPLDYELKSEHQ
ISVIVHRRSGEVSAVTPSRHVLRLKVADVNDNPPHFPQSHYQLEVVENNQPGIPLLQVTA
SDADSGHNGRVTYTLDKHTSTIFNIDPVTGQLSVSASLDREQQGAHNLTVFARDSGSPPL
ESVTTVSIRVLDQNDNAPVFQTPHFIFFVPENVPPFTQVGRVGVTDPDEGENGNTELHVV
NSSGTFVVDHAQGTLRTNTNLDRETEGHYELYLLASDHGHPVALTSSARVTIFVQDINDN
QPKVILPSSNSSCLTVSPSAVAGSMVTKIHAIDEDSGLNSEITYTAVAPETVQNSSPFQV
DSRSGNITLAQQLLQKDLGMHHLFIVVRDGGRPTPLYSTVWVNLLVNESVEPCHLDRAPT
WTGTQQLVQTPPRAPMCEMESPTSAQLTLLAGVGLMLTSTCLLLVTVALYLKQRRGRARQ
KTSGQFDENNIPLRHKDKYYSDE
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atgggtcatgggactcctgataatatgaactgggctggactgctgcagaatctgctgctt
ctggtccatctcaggcagatcgtgtgcgattctgtccggttttccgtcctggaggaacag
gagcctggcactctcgtcgggtcacttgctgaacacttcccccctccgtaccagctcctg
acccaggactacctgtggatggacagaaaaactgggaatttctacaccaccgagaacaag
atggatcgtgaggccctgtgtcccgaggacacaaaagcagaggaatgcattattctactc
tatgccattgtaagaacctcaggggaccttatacagtttcctgtgatcatagaagacatc
aatgacaacacgcctcgctttgaaaacagtgacatacacctgaggatttctgaagacgtg
actgtagggaccagtttcttattggacgaccaggctcaggacagggacgccggtctaaat
ggagacctacagtaccaccttgaatattctgatgttgatgataatggagttttcggttta
aaagtcgaagaagacgggcttttcctcatgctggttgtgcaaacagctctggatagagag
actaaggaccagtatcagatggtgctggttgccactgaccgcggcgtgggccctttaagt
gttacagcaactttaacagtcacggtgacagatgttaacgacaactgtccgcgctttagc
agtgacagcccgagcagtgtcaccatccccggagactccccgaagaacatgctggtggct
caggtcagagccgcagacccagatttaggcccgaacgctgccatcgcttattccctcagt
cccaaagtctccgagcgggccaagaagctctttagcctcgacagcctcactgggtacatc
acactaacacaggacctctggagtgacaactccgaggagctggtgttaaaagtgttagct
agcggccatcactgccccccagcagacactcaggtaaccgtgtgtgtgctccccaaggcg
acccaggagctgacgatcaagatcgggttcatagtggagcatgaaaaccagactatggtg
ttaccggagaaccagccccccaccgtcttagctgttctagagctcgagggtgacagcagc
tttaaaggctcgtctcttgccattgagggcgaagtgcctttcactttgagcccgcagaat
ggcaaatatctgctttccacatcaaagcccctagactatgagttgaaaagtgaacatcag
atttctgtgatcgtccacaggagatcaggtgaagtgtctgccgtcactccctcgaggcac
gtgctgaggctaaaggtggcagacgtcaatgacaatcctccacatttcccccagtctcat
taccagctggaggtggtggaaaacaaccagccaggaataccactgctgcaggtcacagct
tcagatgcagacagcggacacaacggcagggtgacctacacgctggacaaacacacatct
accatctttaacattgaccctgtgacaggtcaactgtctgtgtcggcctctcttgacagg
gagcagcagggtgcacacaacctcactgtgtttgcacgagatagcggctctcctcccttg
gagtccgtgaccacggtgtccatccgcgttctcgaccagaatgacaatgcacctgttttc
caaaccccgcacttcatctttttcgtccccgagaatgtgccgccgttcacccaggtggga
cgggtcggggtgacggacccagatgaaggggagaacgggaacacagagttgcatgttgta
aacagcagtggaacctttgttgtggatcacgcccaggggacgcttcgcaccaacacaaac
ttggaccgcgagacagagggccactacgaactctacttgctggccagcgatcacgggcac
ccggtcgctttgacgtccagtgccagggtgactatctttgtgcaggacatcaatgacaac
cagccaaaagtaatccttcccagcagtaactcctcatgcctgactgtctcgccctctgct
gtggcaggcagcatggtaacaaagatccatgccatcgatgaggactctgggctgaattca
gagattacgtacaccgctgtggcgccagagaccgtgcagaacagcagcccgttccaggtg
gactcaaggtcagggaacattaccttagctcagcagcttctacagaaggacctgggaatg
catcacctgttcattgtggtgagagacggggggagaccaactcctctctacagcactgtc
tgggttaatctgctggtgaacgagagcgtggagccctgccacttggacagggcccccacc
tggacggggacacagcaactggttcaaacccccccaagggcccccatgtgtgaaatggag
tctcccacatctgctcagctcactttgttggcaggcgtgggtttaatgctgacatccaca
tgtttgcttttggtgacagtcgctttatacctgaaacagaggaggggaagagcgcggcag
aagacgagcgggcagtttgacgagaataacattccgctcaggcacaaagataaatattac
tccgatgaataa
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