Hippoglossus stenolepis (Pacific halibut): 118112054
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Entry
118112054 CDS
T08308
Name
(RefSeq) eukaryotic peptide chain release factor subunit 1
KO
K03265
peptide chain release factor subunit 1
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118112054
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsp03019
]
118112054
03012 Translation factors [BR:
hsp03012
]
118112054
Messenger RNA biogenesis [BR:
hsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
118112054
Translation factors [BR:
hsp03012
]
Eukaryotic type
Release factors
118112054
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
eRF1_2
eRF1_3
eRF1_1
acVLRF1
baeRF_family10
Motif
Other DBs
NCBI-GeneID:
118112054
NCBI-ProteinID:
XP_035016920
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Position
7:complement(16306941..16314385)
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AA seq
443 aa
AA seq
DB search
MADDPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTAS
NIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPI
NTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKH
GRGGQSALRFARLRMEKRHNYVRKVAETAVQLFVSNDKVNVAGMVLAGSADFKTELSQSD
MFDPRLQAKVLKLVDISYGGENGFNQAIELSAEVLSNVKFIQEKKLIGRYFDEISQDTGK
YCFGVEDTLKGLEMGAVEILIVYENLDTMRYILRVHGAESNGLENDEKTLYLTPEQEKDK
SHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILR
YRVDFQGMEYQGADDEIFDLDDY
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgaccccagcgcggcggacaggaacgtggagatatggaaaatcaagaagctg
atcaaaagtttggaggctgcccgcggcaatggcaccagtatgatctcgcttatcatccca
cctaaggaccagatttccagagtggccaagatgttggctgatgagtttggcaccgcttcc
aacatcaagagccgagtcaacaggctctctgtactcggggccatcacctctgtacagcaa
agactaaagctctacaacaaggtgccccccaatggcttggtcgtgtactgtgggaccatt
gtgacagaggaaggcaaggagaagaaagtcaatatcgactttgagccttttaagccaatc
aacacctccctgtacctctgtgacaacaagttccacaccgaggcactgacggccttgctc
tctgatgacagcaagtttggctttattgtgatcgacggtagtggggcactgtttggcaca
ctacagggcaacaccagagaggtgctgcacaaattcactgtggacctacccaagaagcac
ggcagaggaggacagtctgctctgcgttttgctcgtctgagaatggagaagaggcacaac
tatgtgagaaaagtggctgagacggctgtccagctcttcgtgtccaacgacaaagtcaat
gtggcaggaatggtcttggctggctctgccgacttcaagactgaactcagtcagtcggac
atgtttgacccaaggttacaagccaaggttctgaagcttgtggacatctcctacggagga
gagaatggttttaaccaggctattgagctctcagcagaggttctctctaatgtcaagttc
atccaggagaagaagctcataggacggtacttcgatgagatcagtcaggacacggggaag
tactgtttcggtgtggaggacacactcaaaggcctggaaatgggagcggtggaaatcctt
atagtctacgagaacttagacaccatgcgatatattctacgtgtgcacggggctgagagc
aacggattagagaacgatgaaaagaccttgtacttaacgccggagcaggagaaagacaag
tctcacttcacagacaaggagacggggcaggaacatgagctgattgagagtatgccacta
ctggagtggtttgctaacaactacaagaaattcggagccacgctggagatagtcacagac
aaaagccaggaagggtcccagttcgtcaagggctttggaggcatcgggggtatcttgcgg
tacagggtggatttccagggcatggagtatcaaggagcggacgatgagatctttgatttg
gatgactactag
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