Hippoglossus stenolepis (Pacific halibut): 118112098
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Entry
118112098 CDS
T08308
Symbol
atrx
Name
(RefSeq) transcriptional regulator ATRX isoform X1
KO
K10779
transcriptional regulator ATRX
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
118112098 (atrx)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hsp03000
]
118112098 (atrx)
03036 Chromosome and associated proteins [BR:
hsp03036
]
118112098 (atrx)
Transcription factors [BR:
hsp03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
118112098 (atrx)
Chromosome and associated proteins [BR:
hsp03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
118112098 (atrx)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
ADD_ATRX
Helicase_C
Motif
Other DBs
NCBI-GeneID:
118112098
NCBI-ProteinID:
XP_035017007
LinkDB
All DBs
Position
7:complement(12537831..12571495)
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AA seq
2150 aa
AA seq
DB search
MSLDSDSTLDPMAEKAEEPGSSREKMKPSSSRSKRKPTTAAKHTGLNESDTSAESDNDGA
PSDNPSDSNTGSASKGTLVMRPAGNENKGAMKLRVDFKPKSTVLVTDDALQKKVNCTACG
KQVNQFQRNSVYEHPALKVLICKSCYKYYTSDDISRDSDGMDEQCRWCAEGGRLICCDYC
NNAFCKKCILRNLGRRELSTITDENSKWHCYTCRSEPLQDLVSKCHRIMEKQELEQLKQR
KPDKTEERESKRQKNKSVKEHKAVVNGKEHTEGSGTMTFSYKKLQVPKELIKKVKKLVET
TTGLNNTFIQFIQQEVEEQEDKSIRCRHLKAFKAVLADLKKAHNALEVALEPEFKSMEFQ
NGNDGQHIARKTKAVPPPVEIDSMDIVANAIDKVDAAEKLDKEPVDELDEEPIDEPIDES
IKELDEEPIDEPIKELDEEPIDEPIKEMDEEPIDEPIKEMDEEPSDEPIKEMDEEPIDEP
IKELDEESIDEPVEELDKELDEEPDEVPIEEPDEVPVENPDEELDEAQPNEQEMDSDKVS
SEIEMKDGQTEVDVTKKKRKSEVCEDDMVSAGEMSLDHDIMSVPPSVPEELFQMVESLAD
STMLSQSNTDLITHTDARSNEKSTDSQRPHPKVKNLIVKLTPVPVVTTCGSRSSRSKNRV
NGGEMQQKCKEEEEGKEKRDAVDGTVSPLPSRRSSRVKTTPLRKQAENKDKVKSSESESE
EESKGKDKSKKFSNAKKEDGKHTKANEKKTTDSDSDEVPPILLEKAAESHSTDEEEGSKS
AKKRLFKLNNTSTQDTDKASKRKRKSESSESDTEKKGKKTPKKKKQNSSNSSNSDSEIKS
KGTAKRRSSRVKKQEEAKQDDKNSPERKAADRKRSYEKKRKGRSSRSTSKLQSSSSEDDE
EQQAEDCSGEDSDEQKIKPIVEENVVGGSGPFHQSSGDEAEDKAEVSEVGEDEDDDDPEN
RIAKKMLLAQIKSNYSSGAESSSDNEGEDEDEKSKKVKKEDDEDYDEEDDEEEQQEDSGS
DVEVKKHGRRHKLLRHKLSLSEGESGEEKTPSKEKSKEGKKKSGQKVDSDDSEDSDFEKS
ESSEESAFSEEVSESENDGKRRKTRASKKKDEEKQRSYKQKKKRRRIKVQDSSSSNEKSG
EEDGEEGEDGEDGEEGEDGDDDDEERKGRKKIRKILKDDKLRTETRDALKEEEDRRKRIS
EREALRVKLREVIVVKESSQITCPITTKLVLDEDEETKEPLVQVHRNLVTKLKPHQVDGV
QFMWDCCCESVKKIEKSSGSGCILAHCMGLGKTLQVVTLLHTLLLCEKLDFTTALVVCPL
NTVLNWLTEFEKWQKGMKDEESLEVVELATVKRPQDRAYALQRWQEMGGVIIIGYEMYRN
LTQGRNMKSKKLKEIFQKTLVDPGPDMVICDEGHILKNEASAVSKAMNSIRTRRRVVLTG
TPLQNNLIEYHCMVNFIKENLLGSVKEFRNRFINPIQNGQCADSTLHDVRIMKKRAHILY
EMLAGCVQRKDYTALTKFLPPKHEYVLSVRVTPLQCKLYRYYLENFTGVGNAVEGGRGRA
GTKLFQDFQMLSRIWTHPWCLQLDYISKENRGFFDEDSMEEFIASETEESSMSMTSEDEK
AKKKKKQGKGKKKGSDDSDSDDVEVIKEWNSSSRGKNGEGRNRPEPVEEPRASGSSPGNP
SADWHRDFVTEADAEILEHSGKITLLFEILRMAEEAEDKVLVFSQSLISLDLIEDFLELS
CRAKDEEKVSPYKGEGKWFRNIDYYRLDGSTNAITRKKWAEEFNDTSNVRGRLFLISTRA
GSLGINLVASNRVIIFDASWNPSYDVQSIFRVYRFGQLKTVYVYRFLAQGTMEEKIYERQ
VTKQSLSFRVVDQQQIERHFTMNELAELYTFEPDMLDDPSEKKSKKATPMLPKDPILAEM
LQNNKDQISCYHEHDSLLDHKEEEALSEEDRKAAWTEYEAEKKGLSMKTNYQQYSQMDMG
SSNYFSYNVAALASMTNQQLEDLINQGRQKVIEATNALKTFSRESVEDTIARLWKENPAL
TESQVQSMALGRQATVELEIKRREAIYRDVLTRQQTLMMFVQKLITNRKVQEQQLAMANQ
ASYLNQLALQNGMMGGSGLSQMDLLGLYQQLHGLGSHQGMGKNPGPSKGL
NT seq
6453 nt
NT seq
+upstream
nt +downstream
nt
atgagtctggattctgattcaacccttgacccaatggcagagaaagcagaggagcctggt
agctccagagaaaagatgaagccctcctcctctcgcagcaagaggaagcccactactgca
gctaagcacactggactgaatgaatccgacacctcagctgagagtgacaatgacggtgcc
ccctctgacaatccttccgacagtaacacaggcagcgcatctaaaggcactttagtgatg
agaccagctggtaatgaaaacaaaggtgccatgaagctgagagtcgatttcaaaccgaaa
tctacagtccttgtaacagatgatgcactgcagaagaaggtaaactgcactgcctgtgga
aaacaagtaaaccagtttcaacgcaactctgtgtatgagcatcccgcacttaaagtactt
atttgcaagtcatgctacaagtattacacaagtgatgacatcagcagagactctgatggg
atggacgagcagtgcaggtggtgtgctgaaggaggcaggctcatctgctgtgactactgc
aacaatgccttctgcaaaaaatgcattttgcgcaacctaggcaggagggagctgtcaacc
attactgatgagaactcaaagtggcactgttatacctgcaggtcggagccgcttcaggat
ctagtctccaaatgccaccgtatcatggaaaaacaagaacttgagcaactcaagcaacga
aaaccagataaaacagaggaacgtgagagcaagagacagaaaaacaaatcagttaaagag
cacaaagcagttgtcaatggaaaagaacacaccgaaggctcagggaccatgacgttttcc
tacaaaaagctgcaggtacccaaagaacttataaagaaagtaaaaaagcttgttgaaact
acaactggtctaaacaatacattcatccagttcatacagcaggaagttgaggagcaagaa
gataaatctatcaggtgtcggcatttgaaagccttcaaggctgtgcttgctgatttgaag
aaagcccacaatgctttggaggtggctttggaacctgagttcaaaagcatggagtttcag
aatggtaacgatgggcaacatattgcaagaaagaccaaggctgttccgccccctgtagaa
attgatagtatggatattgtggcgaatgcaattgataaggttgacgcagcggagaagttg
gacaaggagcctgttgatgagctggatgaggagcccatcgatgagcccatcgatgagtcc
atcaaggagctggatgaggagcccatcgatgagcccatcaaggagctggatgaggagccc
atcgatgagcccatcaaggagatggatgaggagcccatcgatgagcccatcaaggagatg
gatgaggagcccagcgatgagcccatcaaggagatggatgaggagcccatcgatgagcct
atcaaggaactggatgaggagtccatcgatgagcctgtagaggagctggataaggaactg
gatgaggaaccggatgaggtgcccattgaggagccagacgaggtgcccgtcgaaaatccg
gatgaggagctggacgaggcgcagcctaatgagcaggagatggacagtgataaagtttca
agtgagattgaaatgaaagacggccaaactgaagttgatgtaaccaaaaagaaaagaaaa
tctgaagtatgtgaagatgacatggtgtcagctggtgaaatgtccttggatcacgacatc
atgtctgtaccaccttcggttcctgaagagctttttcagatggtggagagtcttgcggat
tccaccatgctctcacagagcaacacagatttgatcacacacactgatgcaaggtcaaat
gaaaaatcaacagactctcaacgcccccaccccaaggtcaagaaccttatagtcaagctc
actccagtcccagtcgtgacaacatgtgggtcaaggtcctccaggtccaaaaatagagta
aacggtggggagatgcagcaaaagtgcaaagaagaagaagaaggcaaggagaagcgtgat
gcagtagatgggacagtaagcccacttcctagccgtcgatctagtagagttaagaccacc
cctttgaggaagcaggccgagaacaaggacaaggtaaaatcctctgaatctgagtcagag
gaagaaagtaaggggaaggacaaatccaagaaattcagtaatgccaaaaaagaggatgga
aagcataccaaggccaatgagaaaaaaaccacagactctgactcggacgaagttccaccc
atactgctagaaaaggcagcagaaagccacagcacagatgaagaagaaggaagcaagagt
gctaaaaagcgcttattcaaactaaacaacacctccacacaggatacagacaaagcctca
aaacgtaagagaaagtctgaaagctctgagtcagatacggagaagaaaggtaaaaagact
cccaagaagaagaagcaaaacagctcaaactcctccaactcggactcggagatcaagagt
aaaggcacagcaaagagaagatctagccgcgtgaagaaacaagaagaagcaaaacaggat
gacaaaaattcacctgagaggaaggcagcagaccgcaaaaggtcttatgaaaagaagcgc
aaaggaaggagctctaggtcaacctcaaagctgcagtcttcctccagtgaggacgatgag
gagcaacaggctgaagattgctcaggagaagacagcgacgagcaaaagatcaagcccatc
gtggaggagaacgttgtgggaggcagtggtcccttccatcagtcctcaggagatgaggcg
gaagataaagcggaagtctctgaggttggtgaagatgaagacgatgatgaccctgaaaac
aggattgcaaagaaaatgcttcttgcccaaataaaatccaactactcttcgggagcagag
agctcctctgataatgaaggagaagatgaggatgaaaagtccaaaaaagttaagaaagag
gatgatgaggattatgatgaagaggatgatgaagaggagcagcaagaagattcaggttct
gatgtcgaagtgaagaaacatggccgacgacacaaattgcttcgtcataagctctcgcta
agtgaaggtgaatcgggagaggagaaaacccccagtaaagagaagagcaaggagggcaag
aagaagtcagggcaaaaagtggacagcgatgactctgaagactcagattttgagaagtca
gagtccagtgaagagtctgcatttagcgaggaggttagcgaatcagaaaacgacgggaag
cgtcgaaaaacaagagcttcaaagaagaaggatgaggagaaacagagaagttacaagcag
aagaagaaacgacgcagaatcaaagttcaggattcctcatccagcaacgagaagagcggg
gaggaagacggggaagagggtgaagatggtgaggatggtgaagagggtgaagacggagac
gacgacgatgaagagcgcaaaggacgcaaaaagattcgcaaaattctgaaggacgacaag
ctgcggacagaaacgagagatgccctgaaggaagaagaggacaggaggaaacgtatatct
gagagggaggcactcagggtgaaacttcgagaggtgattgtagtgaaggagtcttcccag
atcacgtgtcccatcaccaccaagctggtgctggatgaggacgaagagaccaaggagcca
ttggttcaggtgcacaggaaccttgtcacaaagctcaaacctcaccaggttgacggggtt
cagttcatgtgggactgctgctgtgaatctgtgaagaagatcgagaagtcttctggctcc
ggctgtatcctcgcccactgtatgggcctgggaaaaactctacaggtggtgacattgctt
catactttgctgctttgtgagaaactggatttcaccacagcactggtggtttgtcccctg
aacactgtcctgaattggcttaccgagtttgagaagtggcaaaaaggaatgaaggatgag
gagagtttagaggtggttgagctggccacagtgaagaggccacaggaccgagcgtacgct
ctccagagatggcaagaaatgggcggggttataatcattggctacgagatgtaccgaaac
ctgacccagggcaggaacatgaagagcaagaagctgaaagagatctttcagaagacactg
gtagatccaggtccagacatggtgatctgcgatgaaggtcacatcctgaagaacgaggca
tcagcagtgtccaaagcgatgaactctatcaggacgaggaggagggtcgtgctgactgga
acacctctgcaaaacaaccttattgaataccactgcatggtcaacttcatcaaggaaaac
ctgcttgggtcagttaaagagttcaggaaccgcttcattaaccccatccagaacggtcag
tgtgccgactccacgctacacgatgtccggatcatgaaaaagagggctcacatcctctat
gagatgctggctggttgtgtccagaggaaggattacacggcgctcaccaagttcctgccg
ccaaaacatgaatatgtgctgtctgttagagtgactccgctccagtgtaaactctacaga
tactatctggaaaacttcacaggtgtggggaatgctgtggaggggggccgtggccgtgcg
gggaccaaactcttccaggatttccagatgctcagcagaatctggacccatccctggtgc
cttcagctggactacatcagtaaagaaaataggggattctttgatgaggacagtatggaa
gaattcattgcttcagaaaccgaagaatcctcgatgagcatgacctccgaggacgagaag
gcgaaaaagaaaaagaagcaagggaagggaaaaaagaagggctctgatgactccgacagt
gacgatgtggaggtcatcaaggagtggaacagcagctctcggggcaaaaatggagagggc
agaaacagaccagagcctgttgaggagcctcgggcctctggctcatcaccaggaaatccc
tctgctgactggcacagggattttgtcactgaggcagatgctgagattctggagcactct
ggaaagataacactcctctttgagatcctgcgaatggcagaggaagcggaagataaagtg
ttggtgttcagtcagtctcttatctctctggacctaattgaggatttccttgaactgtcg
tgcagagctaaagatgaggaaaaagtttctccatacaaaggtgaaggcaagtggttcagg
aacatagactactatcgcctggatggttccactaacgccattaccagaaagaagtgggcc
gaagagtttaatgacaccagtaacgtaagaggtcgtttgttcctcatctcaacgcgagcc
ggctcactcggcatcaacctggtggcttccaacagggtcatcatcttcgatgcctcctgg
aacccgtcctacgacgtccagagtatcttcagagtctaccgctttggccaactgaagacc
gtctacgtctacaggttccttgcccagggtacaatggaggagaagatttatgagcggcag
gtaaccaagcagtccttgtcattccgagtcgtggaccagcagcagatcgagaggcacttt
acaatgaacgagcttgccgagctctacacctttgagccagacatgctggatgatccctca
gagaagaaaagcaagaaggcaacacccatgctccctaaggatcccattctggctgagatg
ctgcagaacaataaggaccagattagttgttaccatgagcacgactccctgctggaccac
aaggaggaggaagccctgagcgaggaggaccgcaaggctgcctggactgagtatgaggcc
gagaagaagggtctctccatgaagaccaactaccaacaatactcgcaaatggacatgggc
tcttccaactacttctcctacaacgtggcggctttggcctccatgaccaaccagcagctg
gaggacctgataaaccagggacgacagaaagtcattgaagcaacaaatgcattgaagact
ttttcacgggagtcagtggaggacaccattgccagactgtggaaggagaacccggcgctt
acagagagtcaggtccagtctatggccctgggacgtcaggccactgtggagctggagatc
aagcgcagggaagccatttacagggatgttctcaccaggcagcagacgctgatgatgttc
gtgcagaagctcatcaccaacaggaaggtgcaggagcagcagctggccatggctaaccag
gccagctacctgaaccagctggccctgcagaacggcatgatgggaggcagcgggctcagc
cagatggacctgctgggactctaccagcagctccacggcctgggctcccatcaaggcatg
ggcaagaatcctgggccctccaagggcctgtag
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integrated database retrieval system
