Hippoglossus stenolepis (Pacific halibut): 118112145
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Entry
118112145 CDS
T08308
Name
(RefSeq) CCR4-NOT transcription complex subunit 6
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118112145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsp03019
]
118112145
Enzymes [BR:
hsp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
118112145
Messenger RNA biogenesis [BR:
hsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118112145
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
118112145
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Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_4
LRR_8
LRR_14
LRR_1
LRR_LRWD1
Motif
Other DBs
NCBI-GeneID:
118112145
NCBI-ProteinID:
XP_035017096
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Position
7:17159430..17174516
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AA seq
559 aa
AA seq
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MPKEKYDPPDPRRMYTIMSTEDATNGKKSYWAELEISGRVRSLSTALWSLTHLTALHLGD
NSLSRIPPDIAKLHNLVYLDLSSNKIRSLPSELGNMVSLRELLLNNNQLRVLPFELGKLF
QLQTLGLKGNPLAQEIMSLYQEPDGTRRLLNYLLDNLAGAVKRITTEQPPARSWISLLEP
DRARPSALFSVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKSIMQEIMGCNADVISLQE
VETEQYYNFFLPELKEQGYEGFFSPKSRARTMSESDRKHVDGCAIFYKGDKFSAVQKHTV
EFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLEVRKEMMELSSGKSLHGMEKQLLLIANA
HMHWDPEYSDVKLVQTMMFLSEVKNIVDKANRSLKLSSVSGETNAIPLVLCADLNSLPDS
GVVEYLSTGGVDCTHKDFKELRYSDSLTKFNCNGKSSTANGRITHGFKLKSTYENGLMPY
TNYTFDFKGVIDYIFYSKPNLNVLGILGPLDPHWLVENNVSGCPHPHIPSDHFSLFAQLE
LLLPNLPPQVNGLHLPARR
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaggaaaaatatgacccgccagatcccaggcggatgtatacaattatgtctacc
gaagatgcaacaaacgggaagaagtcatactgggctgagcttgaaatcagtggccgagta
aggagtcttagcacagccctatggtctctcacccacctcactgccctgcacctaggtgac
aactctttgtcacgcatcccaccagacattgccaaattacacaacctggtgtacctggat
ctctcatccaataagatcagaagcctgccgtcagagctcggcaacatggtgtctctcagg
gaactgcttttaaataacaaccagttgcgggttctgccatttgaattggggaaactcttt
cagttacaaacactggggttgaaaggaaacccacttgcacaagaaattatgagcctctac
caggaacctgacggcacgcggagactgctcaactacttgttagacaatctggcaggggct
gtcaagcgcataacaacagagcagcccccagcccggtcatggatctcactcctggaacca
gaccgagcacggccctcagcactgttctctgtgatgtgctacaatgtgctgtgtgataag
tacgccacacgacagctatatggttactgtccctcatgggctctgaactgggaatacagg
aagaaatcaatcatgcaggagatcatgggctgcaacgcagacgtcatcagtttacaggaa
gttgagacagagcagtactacaatttcttcttgcctgagctgaaggagcagggatatgaa
gggttcttcagtccaaagtcacgagctaggactatgtcagagtcagaccgtaaacacgta
gatggatgtgcaattttctacaagggagataagttcagtgcagtgcagaagcacacagtg
gagttcaaccagctggccatggctaactccgagggctcagaggctatgctgaacagggtg
atgaccaaggacaacatcggagtcgctgtactgcttgaagtccgtaaagagatgatggag
ctctcctctggaaagtcactgcacggtatggagaaacagctgctcctgatcgccaatgcc
cacatgcactgggacccagagtactctgacgtgaagctggtccagaccatgatgttctta
tcggaggtgaagaacatagtggacaaggccaaccgcagcctcaagttgtcctctgtctct
ggtgaaactaatgccattccactggtgctgtgcgctgacctcaactccttgcctgactct
ggcgtggtggagtacctgagtactggcggagtagactgcacccacaaggacttcaaggag
ctgcgttacagcgacagcctgaccaaatttaactgcaacggcaagagcagcacggccaac
ggcaggatcacccatggcttcaagctgaagagcacttacgagaacggcctgatgccttat
accaactacacctttgacttcaagggtgtcattgactatattttctactccaagcctaac
ctgaacgtgctgggtatcttgggccccctggacccccactggctcgtagagaacaatgtc
agcggctgcccacacccccacatcccctccgaccacttctccctcttcgcccagctggag
ctgctcctgcccaacttgcccccccaggtcaatgggctccatctgcctgcacgcaggtag
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