Hippoglossus stenolepis (Pacific halibut): 118112258
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Entry
118112258 CDS
T08308
Name
(RefSeq) zinc finger CCHC domain-containing protein 7
KO
K12597
protein AIR1/2
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118112258
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsp03019
]
118112258
03016 Transfer RNA biogenesis [BR:
hsp03016
]
118112258
Messenger RNA biogenesis [BR:
hsp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
118112258
Transfer RNA biogenesis [BR:
hsp03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
118112258
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCHC
zf-CCHC_4
zf-CCHC_3
CFAP96-like
Motif
Other DBs
NCBI-GeneID:
118112258
NCBI-ProteinID:
XP_035017312
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Position
7:complement(14789974..14795440)
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AA seq
479 aa
AA seq
DB search
MDRKETEEEEEDGEEALFVENFSSSGEGVMELSDRKQAARLSRDPSPPLLLALSFSSGRA
PEDSSASPASGAGVSQVEEEEEEEDREQPVEEWMILGGEEQVGDSSIHLNLSYWNNPEEE
SGAEDPSVRSDEDAWALSVKDKFGADQSETGRYFYPDRNPICNICNRAGHVARNCYYHKK
CPTCVLCGIQGHSQRDCPSRPCPSCGLPKHGLRHCENTPVWKQLCQRCGMRGHLSDSCPD
TWRQYHLTIRSQVPLRPKTIQRLKYKRCFAHCYNCSKRGHHGYECTKNRMVSGTFPSLPY
VCHYDTMEDILQHRNRSHGRTKELGGAGSMQHPSEPTGQPWEENQPVLWRSGAKQETCGR
AGRRKTWPERRRERQEVKKLRREAQARRQGGLLGRSHPNFDDEADPFKSNCHRHRQSTPP
PKRKKKDEAAVKRSRKSRETERWKKRGGMKRGELYPHGDVDKGSENLLSPKQRVRHRRR
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atggaccgtaaggaaacagaggaggaggaggaggatggcgaggaggctctgtttgttgag
aacttcagtagttcaggtgaaggagtgatggagttaagtgaccggaaacaagctgcacgg
ctcagcagggatccctctcctccacttctcctggccctctcgttctcatctggacgggct
ccggaggacagcagcgccagtccggcttcaggtgctggagtgtcccaggtggaggaggag
gaggaggaggaggacagggagcagcccgtcgaggagtggatgatcctgggaggagaggag
caagtaggagactcaagcattcatctcaacctgagctactggaacaaccctgaggaggag
tctggagctgaagatccaagtgtgaggtcagatgaagatgcatgggcattatcagtgaaa
gacaagtttggtgctgatcagtctgagaccggccgttatttttaccctgatcgtaatccc
atctgtaacatctgcaacagagcgggacacgttgccagaaactgctactaccacaagaaa
tgtcccacatgtgtcctttgtgggatccagggccacagccagagggactgtcccagccga
ccctgccccagctgtgggctgcccaaacatggcctcaggcattgtgaaaacacccccgta
tggaagcagctctgccagcgttgtgggatgagagggcacctctctgattcttgccctgat
acatggcgacaataccacttgacgattcggtcgcaggttcctctcagaccaaaaacaatc
cagagactcaaatataagagatgctttgctcattgttacaactgctctaagaggggacat
catggctatgagtgcactaagaacaggatggtcagtgggacatttccttcactgccttat
gtttgccactatgacaccatggaagacatcctccagcatcgtaacagaagtcatggaaga
accaaagagcttgggggcgctggatccatgcagcacccgtctgaaccaacagggcagcct
tgggaggagaatcagccagtcctttggaggagcggggcaaagcaggagacatgtggccga
gcaggcaggaggaagacgtggcctgagcggcgcagagagagacaggaggtgaagaaacta
aggagagaggctcaagccagaagacaaggaggtctactggggaggtctcatcctaatttt
gatgatgaagcagaccccttcaagtccaactgtcatcgtcaccggcagtccacaccgcct
ccgaagaggaaaaagaaggatgaggcagctgtcaaaaggagcaggaagagcagagagacc
gagaggtggaagaagagaggagggatgaaacgtggggaattatatcctcatggtgatgtc
gacaagggaagtgaaaacctgctctccccaaagcaaagagtacgtcacagaagaagataa
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