Hippoglossus stenolepis (Pacific halibut): 118112277
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Entry
118112277 CDS
T08308
Name
(RefSeq) nuclear cap-binding protein subunit 1 isoform X1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03013
Nucleocytoplasmic transport
hsp03015
mRNA surveillance pathway
hsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118112277
09122 Translation
03013 Nucleocytoplasmic transport
118112277
03015 mRNA surveillance pathway
118112277
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsp03019
]
118112277
03041 Spliceosome [BR:
hsp03041
]
118112277
Messenger RNA biogenesis [BR:
hsp03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
118112277
Spliceosome [BR:
hsp03041
]
Common components
Common spliceosomal components
Cap binding complex
118112277
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G
MIF4G_like
Ald_deCOase
MG280
Vfa1
AAA_13
AAA_11
2CompARG
Motif
Other DBs
NCBI-GeneID:
118112277
NCBI-ProteinID:
XP_035017352
LinkDB
All DBs
Position
7:25261491..25269181
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AA seq
802 aa
AA seq
DB search
MSRRRHSDENDGGQAHKRRRTSEPIEIEDRLESLICRVGEKSTSSLESNLEGLAGVLEAD
LPNYKNKILRILCAVARLLPEKLTVYTTLVGLLNARNYNFGGEFVEAMIRQLKETLKNNL
YNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRSDWFVYVVLSCLPWV
GKELYEKKDVEMDRLLSQVEGYLKRRVKTHVPMLQVWTAEKPHPQEEYLDCLWAQMQKLK
KDRWQERHILRPYIAFDSVLCEALQHNLPPFTPPGHMPDAQYPMPQVVFRMFDYTDAPEG
PVMPGSHSVERFVIEENLHCIIKTHWKERKTCAAQLLSYPGKNKIPLNYHIVEVIFGELF
QLPAPPHLDVMYTTLLIELCKLQPGSLPQVLAQATEMMYMRLDTMNTSCIDRLINWFSHH
LSNFQFRWSWDDWSDCLAVDLDKPKPKFVKEVLEKSMRLSYHQRMVDIVPPTFSALIPAE
PIFIYKYLDESSSSLPGYPVSITVGNAIKNRASNEEILSILKEVPNPNQEDDDDEGETFN
PLKIDVFLQTLLHLAAKSFSHSFSALAKFHEILKALTDSDEGKLHMLKVVYEAWVNHPQM
IAVLVDKMIRTQIVDCAAVANWLFSQDMAHEFTRLFTWEILHSTIRKMNKHVQKIQKELE
EAKDKLEKQQHKRLGLVLQQKDSGDEEDMEKNSEDEDGQLEEQIERLQEKVESAQSEQKN
LFLVIFQRFIMLLTEHLVRCETGSVDISTPWYKSCIERLQQIFLMHHVTIHQYMGTLENL
LFTAELDPHILAVYQQFCALQL
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggagacgacacagcgacgagaacgacggaggtcaggctcataaaaggaggaga
acatctgagcccatcgagatcgaggatcgtctggagtcactgatatgtcgtgtgggggag
aagagtacgtcgtccctggagagcaacctggaggggctcgctggcgtcttagaggccgac
ctcccaaactacaaaaacaaaatcctgcgcattttatgtgctgtcgcccgcctcctaccc
gagaagctgactgtctacacaactttagtcggcctcctcaacgccaggaactacaacttc
gggggcgagtttgtcgaggcgatgatcagacaactcaaagaaaccttgaaaaacaacttg
tacaatgaagccgtttacttggttcgttttctgtctgacttggtcaactgccatgtgatc
gccgctccttcgatggtggccatgtttgaaaattttgtcagtgttactcaagaggaggat
gtaccacaggttcggtcggactggtttgtgtacgtggttctctcctgtctgccctgggtc
ggtaaggagctctacgagaagaaggacgttgagatggaccgactcctcagtcaggtcgag
ggctacctcaagaggagagtaaagactcatgtcccgatgctgcaggtgtggacagcggag
aagcctcatcctcaagaggagtacctggactgcctctgggctcagatgcagaagctaaaa
aaagaccgatggcaggagcgccacatccttcgcccgtatatcgccttcgacagcgtcctg
tgtgaggcgctgcaacacaacctgccgcccttcaccccaccgggccacatgcccgacgct
cagtatccgatgccccaggtcgtcttccgcatgttcgactacaccgacgcgcccgagggt
cccgtgatgcccggcagtcactctgtggagagatttgtcatcgaagaaaacctgcactgc
atcatcaagactcactggaaagagaggaaaacatgtgctgctcagttactcagttatcca
gggaaaaataagattccgctcaactatcacattgtggaggtgatcttcggggagcttttc
cagctgcccgctccgcctcaccttgacgtcatgtacaccacactgcttattgaactctgc
aaactgcagccgggatctctgccacaagtcttggcccaagccacagagatgatgtacatg
aggctggacaccatgaacaccagctgcatagacagactaataaactggttttctcatcat
ttgagcaacttccagtttcgttggagctgggacgactggtccgactgcctggctgtggat
ctagataaacccaagcccaagtttgtcaaagaagttctggagaagtctatgagactttcg
tatcatcagcgaatggtggacatcgtccctccgaccttctcagcgctcatccccgctgaa
cccatcttcatatacaagtacctggacgagagctcttcgtcgttgcctggttacccagta
tccatcactgtggggaacgccatcaagaaccgtgcgtccaatgaagagatcctgtccatc
ctcaaagaagtgcccaaccccaaccaggaagacgacgatgatgaaggcgagactttcaac
cctctgaagattgacgtgttcctgcagactcttctccacctggcggccaaatccttcagc
cactccttcagcgccctcgccaagtttcatgaaatcctgaaggcgctgaccgacagcgac
gaggggaagctgcacatgctgaaagtggtttatgaagcgtgggtgaaccacccacagatg
atcgccgtgttggtggacaaaatgatccggacacagattgttgactgtgctgctgtcgcc
aactggctcttctcccaggacatggctcacgagttcaccagacttttcacctgggagatt
ttgcattccaccattcgaaagatgaacaaacacgtccagaagatccagaaggagctggag
gaggccaaggacaagctggagaaacagcagcataagaggttggggcttgtactccagcag
aaggacagcggtgacgaggaggacatggagaagaacagcgaggacgaggatggtcagctg
gaggagcagatcgagaggctacaggagaaggtggagtcggctcagagcgaacagaagaac
ctcttcctcgtcatcttccagcgcttcatcatgttgttgaccgagcacttggttcgctgt
gagactggaagtgtcgacatcagcacgccctggtacaagagctgcatcgagcgcctgcag
cagatcttcctcatgcaccatgtgaccatccaccagtacatgggaaccctggagaacctg
ctgttcaccgcggagctcgacccccacatcctggccgtctaccagcagttctgtgctctg
cagctctaa
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