Hippoglossus stenolepis (Pacific halibut): 118112310
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Entry
118112310 CDS
T08308
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
118112310
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
hsp01009
]
118112310
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
hsp04515
]
118112310
Protein phosphatases and associated proteins [BR:
hsp01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
118112310
Cell adhesion molecules [BR:
hsp04515
]
Cadherins
Protocadherins
118112310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
Fibulin_C
PDGLE
Motif
Other DBs
NCBI-GeneID:
118112310
NCBI-ProteinID:
XP_035017403
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All DBs
Position
7:26730685..26890128
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AA seq
1216 aa
AA seq
DB search
MAALRWEVPMFLAVVLLVSCNAAPTDILYRVPEEQPPNTLIGSLAADRGLPDTGHLYKLE
VGTPYLRVDGKTGDIYTTEIPIDRETLSDCRNLFDGDKCFLEFEVSITDMVKGLGMGPRL
IEGRIEVLDINDNTPQFSSPILSLSIPENTHIGALFSIPMATDRDSGTNGVAEYALTTGP
DADQLFTLQVAVDSDEKLPQLVVMGNLDRERKDSYDLNIRVVDGGKPARASSALLRVTVT
DQNDNAPKFERSHYEAELPENSLLGHSVLQVRANDGDTGINGEIDYSLHQASETVQRLLR
IDRSTGIIYVKGQVDREEESFLKFFVVAKDRGPNSKNSKVLVTINVRDHNDNAPAIEIRG
IGLVTHQDGVANISEDMPIGTAVALVQVSDRDEGENAVVTSVVAGDVPFQLQPASESAND
RKRKYFLQTTTPLDYERVKEYRIEIVAVDSGNPALSSTNSLKVQVTDVNDNAPNFSPAML
EVDFAEGNQPGDKVLDVVATDADSGTNAELAYSIIEHSATRLFEIDSNTGELRVKNLLDR
EDTERYEFRVAAADKGVPSKTGTATVVVNVLDRNDNDPKFMLSGYSFSVIENMAPLNPVG
VVTVTDADKGENARVRLFVEPDNGKFVIQNGTGTILSSISFDREKESTYTFRLRAVDSGD
PPRSSYVGVTINVLDENDNAPYVTKPANSSYTYLTPVTQPETRVEVVEAEDIDSGPNAEL
VYTITGGNPFDLFDISPSSGEITLAQEFTGKHNGLHRLVVRVSDKGKPPRHTTALVHVFV
NDTKSNVSVIEALVGHSLYTPLDRDIAGDPNYALAQRSNILYGSLAGIAGVIMVIVAVVV
IRHRLQKDTKSGYQAGKKESKDLYAPKQGPKNGKGKKSKKGKAPKPAKPLEEDEEASLQK
ALKFNLINESVNDSPRIHLPLNYPPGSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQAVQ
DLPATNTFVGTGDNNSTGSDQYSDYSYKANPPKYSSKQPPHRRVTFSTANQAQDLQDASQ
HSYYDSGLEESETPSSKSSSGPRVGPLALPEDHYERTTPDGSIGEMEHPENDLRPLPDVA
MTGNCTHECTEFGHSDSCWMPGQPSPTRKVSKNAPPLSTFVPYQEMDGQEQLMANGSPKP
LMTEERGTGSGGGSGGGSGSKVANMRFMTPYSSAYPGGGDSSGKDCGLEEIPLSQAVEYH
SATTPTGQTAKREIYL
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgctgaggtgggaggttcctatgttcctggcggttgtcctgctggtctcctgt
aacgctgcacccaccgacatcctttatcgagttcctgaggagcagccgcccaacacgctg
atcggcagcttggcggcagaccggggcctccccgacaccggccacctctacaagctggaa
gtcggcacgccgtatctgcgggtggacggcaagaccggcgacatctacaccacggagatc
cccatcgaccgcgagacgctgagcgactgccgcaacctgtttgatggcgacaaatgtttc
ctggagttcgaggtgtcgatcactgacatggtgaagggcctcggcatggggccacggcta
atcgaaggccgcatcgaggtgctggacatcaacgacaacacgccgcagttctcctcgccc
atcctttccctctccatccccgagaacacgcacatcggcgccctcttctccatccccatg
gccaccgacagggactctggcaccaacggcgtggccgagtacgcgctgaccaccgggcct
gacgccgaccagctcttcaccctgcaggtcgccgtggactcggacgagaagctgccgcag
ctggtcgtcatgggcaacctggaccgcgagaggaaggactcgtacgacctgaacatcagg
gtggtggacggcgggaagccggcgagggcgagcagcgctctgctgcgggtcaccgtcacc
gaccagaacgacaacgctcccaagttcgagaggagtcactacgaggccgaactcccggag
aacagcctgctgggtcactctgtgctgcaggtcagagccaatgatggagacaccggcatc
aacggagagatcgactacagccttcatcaggcgtcggagaccgttcagaggcttctgcgc
atcgaccgctccactggaatcatatacgtcaaaggccaagtggaccgcgaggaagagagt
ttcctcaagttctttgtggtcgcgaaagatcgtgggcccaactccaagaactccaaggtc
ctggtgaccatcaacgtcagggatcacaatgacaacgcaccagcgatcgagatccgtggc
attggcttggtgacgcatcaagatggcgtggcgaacatctctgaggacatgcccatcggg
accgcggtggcgttggtccaggtgtccgaccgtgacgagggggaaaatgctgtggttact
tctgtagttgccggtgacgtcccattccagctccaacctgcaagtgagtcagccaacgat
cggaagaggaagtatttcctgcagacaactaccccgctggattatgagcgtgtaaaggaa
tacagaattgaaattgtcgctgtggattctgggaacccagccctgtccagcaccaactcc
ctcaaagtccaggtcactgacgtgaacgacaacgcgccaaacttttcccctgcgatgctc
gaggtggactttgcggagggaaatcagccgggtgataaagttctggatgtcgtggcaacg
gatgcagacagtggcaccaacgcagaactggcctatagcatcatcgagcactcggccacc
aggctctttgagattgactccaacacaggggagctgcgtgtgaagaacctgttggatcgg
gaggatacagagcgctacgagttccgcgtggcagccgcagacaagggggttccaagcaaa
actggcactgctacagtggtggtgaatgtcctggaccgcaacgacaatgaccccaaattt
atgctgagcggctacagcttctctgtcattgagaacatggctccgctcaaccccgttggc
gtggtgaccgtcactgatgctgataaaggtgaaaatgccagagtaaggctgtttgtggaa
ccggacaatgggaagtttgtcatccagaatggcaccggaaccatcctgtccagcatctcc
tttgaccgtgagaaggagagcacctacaccttccgtctgagagccgtggattcaggtgac
cctcctcgatcttcttacgtaggtgtgaccatcaatgtcctggatgagaacgataacgcc
ccctatgtcaccaaaccggccaactcctcctacacttacttgacacctgtcactcaacca
gagacccgtgtggaggtggtagaggctgaggatattgactctggacccaatgctgagctg
gtctacaccatcacaggcggcaacccgtttgacctgttcgacatctcgcccagcagcggg
gagatcacactggcgcaggaattcactggaaagcacaatggactgcaccgacttgtcgta
cgggtcagtgacaaaggcaaacctccacgccacaccactgccctggtccacgtgtttgtc
aacgacaccaagtccaatgtttctgtcatcgaggcgctggtcggacacagcctctacacc
cctctggacagggacatcgctggggatcccaactacgcccttgctcagcgcagcaacatc
ttgtatggcagcctggcaggtatcgctggtgtgatcatggtcattgtagccgtggtggtt
attagacaccggctgcagaaggacaccaagagcggctatcaggccggcaagaaggagagc
aaggacctgtacgctccaaagcagggacccaaaaatggcaaagggaaaaagagcaaaaag
ggtaaagctccaaaacctgccaagcccctggaggaggacgaggaggccagcctgcagaaa
gccctcaagttcaatctcattaacgaaagtgtcaacgacagtcccagaatccacctgccc
ctgaactacccaccaggaagccccgatctggggcgacactatcgctccaattcccccctc
ccctccatccaactgcagccacagtcgccttccgcctccaagaagcaccaggcggttcag
gacctccctgccaccaacacctttgtgggaacaggggacaacaactccacaggctccgac
caatattcggattacagctacaaggccaacccgcccaaatacagcagcaaacagcccccc
caccgccgagtgaccttctccacggccaaccaggctcaggacctgcaggacgcgtcccag
cacagctactacgacagcggcctggaggagtcggagacccccagctccaagtcgtcgtcg
gggccgcgggtcgggcccctggcgctgccggaggaccactacgaacggaccacgcccgac
ggcagcatcggcgagatggagcacccggagaacgacctcaggccccttcccgacgtggcg
atgaccggtaactgcacccacgagtgcaccgagttcggccactccgactcctgctggatg
cccggtcagccttcccccacccgcaaggtgtccaagaacgcccccccgctctccaccttc
gtgccttaccaggagatggacgggcaggagcagctgatggccaacggcagccccaagccc
ctgatgacggaggagcgcgggacgggcagcggcggcggcagcggaggtggcagcggttcc
aaagtggccaacatgcggttcatgaccccctacagcagtgcctaccccgggggcggagac
tcgtctgggaaagactgtgggctggaggagatcccgctgagccaggcggtggagtaccac
tcggcgaccactcccaccggccagaccgccaagagggagatctacctgtga
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