Hippoglossus stenolepis (Pacific halibut): 118112320
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Entry
118112320 CDS
T08308
Symbol
si:ch211-114c17.1
Name
(RefSeq) pre-mRNA-processing factor 39
KO
K13217
pre-mRNA-processing factor 39
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hsp03041
]
118112320 (si:ch211-114c17.1)
Spliceosome [BR:
hsp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
118112320 (si:ch211-114c17.1)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_12
TPR_19
TPR_2
TPR_11
TPR_MalT
TPR_21
HrpB1_HrpK
UTP6_C
ARM_TT21_4th
GAT
Mad3_BUB1_I
Spectrin
Motif
Other DBs
NCBI-GeneID:
118112320
NCBI-ProteinID:
XP_035017424
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All DBs
Position
7:13623087..13630738
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AA seq
737 aa
AA seq
DB search
MDDVSKTFFIMAAEGGEELSGNGELEESPAMEASEDPASPLFEMAEMSEENGSATVAPEA
PVDLDPSSFSMPLAGEDEEGELPADFERLWKATQDNPHDFTSWTDLLQYCEQESHMTASR
RALVAFLASYPLCYGYWKKYTDLERRAGYNSKAEEVCIQGLQAIPLSVDLWIHYINLLLG
TLDMNLTESPMRIRSVFEDAVVAAGLDFHSDRLWDLYVEWEKEQGNMKNATAILDRVLKV
PTQLYNTHYDKFKEHLNSLEPKEVLSPEEYDELRTLCRQSQKAERAEQAQEDEAERPPGE
EEPATPEGTDTEELIQKIREQVLVRRDKVYQDNEGEVRQRWHFEDAIKRPYFHVKSLDRH
QLRAWHSYLDWEIAQLNKDTKDPDQDPSQAATEGSEVTVQPHEVSEEAAVAHDDHRVRIL
SERCLIACALYEEFWMRYIQYLEPQSVDEARAVFKRASEVHLTHKPNIHMQWATFEERHG
DLTEARRVLEALEKNLPGLAVVCLRRAALERRAGNLEKSEALLQEAVAGSKEKPTLHAFY
SIKLARLLLKLGRNPSKARRVLQEALEISPDNDKLHLNLLELEVSGDPWASAEAVQECVT
RALAAPLASHTKILFSQRGLQFAEDYSNSIESVLSVFEEHQKLVKELGGTKRGAENGDED
SEKLEKSEDDSAVSVSTQVPPTVPHVPITTPPPPVMGTDMSAQAGYGGYGNWYQQSQYGN
YGYQNTWNYNQGFYPPS
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atggatgacgtcagcaagacgtttttcatcatggcggcggaaggcggcgaagagctgagc
ggcaacggggagctcgaggagtctccagccatggaggcctctgaggatcccgcgtcgccc
ctatttgagatggctgagatgtcagaagagaacggcagtgccactgtggcccctgaggct
cccgtggacctcgacccttcttccttctccatgcctctggctggggaggatgaggaggga
gaactgcctgctgacttcgagcgtctgtggaaggccacccaagacaatcctcatgacttc
accagctggactgacctgctgcaatactgtgagcaagagagtcacatgacagcgtcacgc
agagcgctggtggccttcctcgctagctacccgctctgttacggctactggaagaaatac
actgatctggagcgccgtgcaggctacaacagcaaagcagaggaggtgtgtattcagggt
cttcaggcaatccctctgagtgtagatctgtggatccactacatcaatctgttgctggga
acactggacatgaacctgaccgagtcaccaatgcggattcgcagtgtttttgaggatgcg
gttgtggcagcaggtctggacttccactcagaccggctttgggatctgtatgttgagtgg
gagaaggagcaggggaacatgaagaacgcaacagccatcctggacagagtcctcaaagtc
cccacccagctctacaacacgcactacgacaagttcaaggagcacctgaacagccttgag
cccaaagaggtgctttccccggaggagtacgatgagctgaggacgttgtgccgtcagagt
cagaaggctgagcgcgctgagcaagcccaggaggatgaggcggagaggccgccgggggag
gaagagccggccacacctgagggcacagacacagaggaactgatacagaagatcagggaa
caagtgctggttcgcagggacaaagtgtaccaggacaacgaaggagaagttcgtcaaaga
tggcactttgaagatgctatcaagcggccgtacttccacgtcaagtcacttgaccgtcat
cagctgcgagcctggcactcatacctggactgggagatcgctcagctgaacaaggacacc
aaagaccctgatcaagatccaagtcaggcagccacagaggggtcagaggtcactgttcag
ccccatgaagtgtcagaggaagctgcagtcgcccacgatgaccacagggttcgcatcctg
tctgagcgatgtctgatcgcttgtgctctgtatgaggagttctggatgaggtacattcag
tacctggagcctcagagtgttgacgaagctcgagctgttttcaaacgagcctctgaggtt
cacctgacgcacaaacccaacatccacatgcagtgggccacctttgaggagaggcacggt
gatttaaccgaggctcggcgagtgctggaggccctggagaaaaatctgccggggttggcg
gtggtctgtctccgccgggctgctctggagagacgagcaggcaacctggaaaaatccgag
gccttgctgcaggaggcggtggctggatccaaagagaagcccacgttgcacgctttctac
tccatcaagctggctcgcctgctactgaaactgggcaggaaccccagcaaagcccgcaga
gttttacaggaggcgctggagattagtccggataatgataaactgcacttgaacctgttg
gagctggaggtgtccggggacccctgggcctcagcggaggcggtgcaggagtgtgtgaca
cgtgctcttgccgctcccctcgcctcacacaccaagatcctcttctctcagagaggtctg
cagtttgcagaggactacagcaactctattgagagtgtgctgtctgtctttgaggagcat
cagaaactggtgaaggagctcggtggaacaaagagaggagcagaaaacggggatgaggat
tcagagaaacttgaaaaaagcgaggacgactctgctgtttccgtgtccacacaagtcccc
cccaccgtgccgcacgtcccgataaccacaccccctcctcctgtgatgggcaccgacatg
agcgcacaggccggctacggaggatacggcaactggtaccagcaatcgcagtacggcaac
tacggttatcagaacacctggaactacaaccagggcttctatcctcccagctaa
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